BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39840.1
Length=1914
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490769 jgi|Araly1|490769|fgenesh2_kg.7__202__AT4G39840.1 2830 0.0
> Ahg490769 jgi|Araly1|490769|fgenesh2_kg.7__202__AT4G39840.1
Length=1870
Score = 2830 bits (1532), Expect = 0.0
Identities = 1792/1907 (94%), Gaps = 60/1907 (3%)
Strand=Plus/Plus
Query 31 CCTACCAAATACAAACAATCACATAAATACaaaaaaaTGCAGAATCATATAAAAAATTAG 90
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 CCTACCAAATACGAACAATCACATAAATACAAAAAAATGCAGAATCATA-AAAAAATTAG 59
Query 91 ACAAGTAGCAGAGAATCTGCAACATGACGGTGCGGTTAAACAGTAGT-A-AGTACATTGA 148
||||||||||||||||||| |||||||||||| | |||||||||||| | ||||||||||
Sbjct 60 ACAAGTAGCAGAGAATCTGAAACATGACGGTGAGATTAAACAGTAGTAATAGTACATTGA 119
Query 149 TATTATCAAAGGGACTGAATTAGTAAATTCTCTGGTCTCCATCTTCTCTCTTATCGTTca 208
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 120 TATTATCAAAGGGACTGAATTAGTAAATTCTCTGGTCTCCATCTTCTCTATTATCGTTCA 179
Query 209 cacacacacaaacactcatatat-aa-ac--acatatgcacacTGTCACTAATGCTtctc 264
||||||||||||||||||||||| || || |||||||||||||||||||||||| | ||
Sbjct 180 CACACACACAAACACTCATATATAAACACATACATATGCACACTGTCACTAATGC-T-TC 237
Query 265 tctctctctctttctctTTTCCTATATATTGACAAGCTTGCGATCTCTGTTCGCTAGATC 324
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 238 TCTCTCTCTCTTTCTCTTTTCCTATATATTGACAAGCTTGCGATCTCTCTTCGCAAGATC 297
Query 325 TGTCTGAAACAGTGAGGGGATTCCTAGGTTTCAGAGCAAAGTAATGTCTCCACTCAAGTA 384
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 298 TGTCTGAAACAGTGAGGGGATTCCTAGGTTTCAGAGCAAAGTAATGTCTCCACTCAAGGA 357
Query 385 CTTGTGTTTTAGAAAGGTACTCTTGTTGTTGCTCTATTCCAGtctcttcctattctcttc 444
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 358 CTTGTGTTTTAGAAAGGTACTCTTGTTGTTGCTCTATTCCAGTCTCTTCCTTTTCTCTTC 417
Query 445 ttcttctttcttTGCCTCATCAGTTGATGATCATGAGCTACAACGAATAGATCCTCATTT 504
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TTCTTCTTTCTTTGCCTCCTCAGTTGATGATCATGAGCTACAACGAATAGATCCTCATTT 477
Query 505 CCGAGTGAGAAGATTGTTGGTGAAAGATCTGGATTCAACTGGTGATGATGATGAAACCAA 564
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 478 TCGAGTGAGAAGATTGTTGGTGAAAGATCTGGATTCAACTGGTGATGATGATGAATCCAA 537
Query 565 TCTTCCTCCTCCTCCTAAGAAGAAGAAGCTTCTTACTGATTCTGTTtcatcatcatcatc 624
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 538 TCTTCCTCCTCCTCCTAAGAAGAAGAAGCTTATTACTGGCTCTGTTTCATCATCATCATC 597
Query 625 atcatcTGGTACTAAGAAGAATCAAACCAAGCTCCTTAAACCCATCTCTTC-T--TCTTC 681
|||||||||||||||||||||||||||||||||| ||||||| |||||||| | |||||
Sbjct 598 ATCATCTGGTACTAAGAAGAATCAAACCAAGCTCATTAAACCAATCTCTTCTTCGTCTTC 657
Query 682 TTCCACCAAGAACCAAACTAAACTCGCCAAGACCACCACCATGGGTACGTCTCACAAACT 741
||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||
Sbjct 658 TTCCACCAAGAACCAAACTAAACTCGCCAAG---ACCTCCATGGGTACATCTCACAAACT 714
Query 742 TAACTCCACAAAATCTTCTTCTAACACAACCAAGACCAGCTCTGAGCTCAAGAAGCTCAA 801
| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 715 TGACTCCACCAAATCTTCTTCTAACACAACCAAGACCAGCTCCGAGCTCAAGAAGCTCAA 774
Query 802 TTCCGGAACAAAATCCACAAATTCTACTTCTTCGATCAAGAAATCAGCAGATCTGTCCAA 861
||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 775 TTCCGGAACAAAACCCACAAATTCTACTTCTTCAATCAAGAAATCAGCAGATCTATCCAA 834
Query 862 ATCAAGCTCATCCAAAAACAAAACCACCATAAAACCCCCAAGTTCCAAACTTTCTTCA-- 919
|||||||||| ||||||||||||||||| | || || |||||||||||||||
Sbjct 835 ATCAAGCTCACCCAAAAACAAAACCACC--ACAA-----AA--TCCAAACTTTCTTCACC 885
Query 920 -CCTCCATCAGAGAAGAAATCACAACCCTCCTCAAAACCAGTGACCAAATCGAAACAATC 978
||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||| |
Sbjct 886 TCCTCCTTCAGAGAAGAAATCACCACCATCCTCAAAACCAGTGACCAAATCGAAACAA-C 944
Query 979 C-GAGAAAGAAATCAAACCATTCTGGCTAGACGACGAAGAAGACGAAGATTTCGTAAGCG 1037
| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 945 CGGAGAAAGAAATCAAACCATTCTGGCTCGACGACGAGGAAGACGAAGATTTCGTAAGCG 1004
Query 1038 AATTCAGAGATCTACCAACAAGATTCCAAAGATCCCTAATCCCAGACCTAGAGCGAATCt 1097
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 1005 AATTCAGAGATCTACCAACAAAATTCCAAAGATCCCTAATCCCAGACCTAGAACGAATCT 1064
Query 1098 caacaacatccaaaaactacatcaacaaagccaacaaacagatcaccaaaaacttcaaac 1157
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1065 CAACCACATCCAAAAACTACATCAACAAAGCCAACAAAGAGATCACCAAAAACTTCAAAC 1124
Query 1158 CCTATTTCGGCAACAAATACGCACCAACCATAGCTTCCGTAGTCTCTTTCGTCTTCATCC 1217
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1125 CCTATTTCGGCAACAAATACGCACCAACCATCGCTTCCGTAGTCTCTTTCGTCTTCATCC 1184
Query 1218 TCGTCCCTCTACTCTTAGTCTCACTCATTTTCAACAGATTCAAAGCTTATTTCTCACTCC 1277
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1185 TCGTCCCTCTACTCTTAGTCTCCCTCATTTTCAACAGATTCAAAGCTTACTTCTCACTCC 1244
Query 1278 AGAAGATCCTAATCTTCATCCAAATCTACCTCTCGATCTACTTCTCAATCCTATGCCTCT 1337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1245 AGAAGATCCTAATCTTCATCCAAATCTACCTCTCGATCTACTTCTCAATCCTATGCCTCT 1304
Query 1338 CATCGCTCGTCACCGGAATCGAACCACTCAAGTTTCTCTACGCAACATCGAGCTCAACAT 1397
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1305 CATCGCTCGTCACTGGAATCGAACCACTCAAGTTCCTCTACGCAACATCGAGCTCAACAT 1364
Query 1398 ACGTTTGCTTGCAGATCCTGCAAACCCTAGGCTACGTCTTCTACCTCTTGCTTCTTCTCA 1457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1365 ACGTTTGCTTGCAGATCCTGCAAACCCTAGGCTACGTCTTCTACCTCTTGCTTCTTCTCA 1424
Query 1458 TGTACCTCGTTCTCGTCTTCTCCACGGATTGTGGTTTGGGCCTTAAGGTATTGGGCTTGG 1517
|||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||
Sbjct 1425 TGTACCTCGTTCTCGTCTTCTCTACGGATTGTGGTTTGGGCCTGAAAGTATTGGGCTTGG 1484
Query 1518 CGCAGACCTTTGTGGGCTTTGCTGTAGGTCTGCATTATTACGTGGCGGTGTTTCATAGGG 1577
|||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1485 CGCAGACCTTCGTGGGCTTTGCTGTTGGTTTGCATTATTACGTGGCGGTGTTTCATAGGG 1544
Query 1578 TGGTGCTTCGTCAGCCTCCGAAGACGAACTGGAAGATACACGGTGTGTATGCCACGTGTT 1637
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1545 TGGTGCTTCGTCAGCCTCCGAAGACGAACTGGAAGATACACGGTGTTTATGCCACGTGTT 1604
Query 1638 TCCTTTTGATTTGTCTGTTATCTAATGCTGAGAGGAGGAAGAAAGAGTACTTGGAAGAAG 1697
| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1605 TTCTTTTGATTTGTCTGTTATCTAATGCTGAGAGGAGGAAGAAGGAGTATTTGGAAGAAG 1664
Query 1698 GCGGTGACGAAGGGAAGAAAAATTGAAattttctttattttattcttctctatctttgta 1757
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1665 GCGGTGACGAAGGGAAGAAAAATTGAAATTTTCTTTATTTTATTTTTCTCTATCTTTGTA 1724
Query 1758 tttttatattttaaattttgaaaaattcggcaaaattttaGCTGAGAAATGCAATAGAAA 1817
||||||||||||||||||| | | | | | |||||||||||||||
Sbjct 1725 TTTTTATATTTTAAATTTT-A-------G-C----T----G---AGAAATGCAATAGAA- 1763
Query 1818 GAACAATT-ACTGGTGGATGGTTGGAAACtttttttAA---A-A-ACTTCAATTGTATTT 1871
|||||||| ||||||||||||||||||||||||||| | | |||||||||||||||
Sbjct 1764 GAACAATTTACTGGTGGATGGTTGGAAACTTTTTTTTTTTTATATACTTCAATTGTATTT 1823
Query 1872 ATAATAAAT----CGATAAATGTGGAATAAAATTTCATAATCTCATT 1914
||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 1824 ATAATAAATAAATCGATAAATGTGGAATAAAAGTTCATAATCTCATT 1870
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71914382560
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5