BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39860.1
Length=1226
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943987 jgi|Araly1|943987|scaffold_700216.1 1491 0.0
> Ahg943987 jgi|Araly1|943987|scaffold_700216.1
Length=934
Score = 1491 bits (807), Expect = 0.0
Identities = 885/922 (96%), Gaps = 8/922 (1%)
Strand=Plus/Plus
Query 135 AGAAGAAAGAGaaaaaaaaGAGATGGAGAGAAACACGCCGGTGAGAAACCCTCACACTTC 194
||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGAAGAAAGAGAAAATAAA-A-ATGGAGAGAAACACGCCGGTGAGAAACCCTCACACTTC 58
Query 195 CACCGCCGATCTGCTTTCTTGGTCGGAAACTCCTCCTCCTCCTCACCACTCAACCCCTTC 254
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 59 CACCGCCGATCTGCTTTCTTGGTCGGAAA---CTCCTCCTCCTCACCACTCAACCTCTTC 115
Query 255 CGCCGCTCGTTCTCACCAGCCGTCCGATGGAATCAGCAAGATTCTAGGCGGTGGTCAGAT 314
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 116 CGCCGCTCGTTCTCACCAGCCGTCCGATGGAATCAGCAAGATTCTCGGCGGTGGTCAGAT 175
Query 315 CACAGATGAAGAAGCCCAGTCGCTTAATAAGCTAAAGAATTGTTCAGGGTACAAGTTAAA 374
||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 176 CACCGATGAGGAAGCTCAGTCGCTTAATAAGCTGAAGAATTGTTCAGGGTACAAGTTAAA 235
Query 375 AGAGATGACTGGTAGTGGCATATTTACTGATAAGGGAAAAGTTGGATCTGAATCCGATGC 434
|||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 236 AGAGATGACTGGTAGTGGCATATTTAATGATAAGGGAAAAGTTGGGTCTGAATCCGATG- 294
Query 435 TACTACTGATCCAAAGACTGGACTCCGTTACTATCAGCAGACTCTGAATGGAATGAGTCA 494
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 295 --CTACTGATCCAAAGACTGGACTCCGTTACTATCAGCAGACGCTGAATGGAATGAGTCA 352
Query 495 GATATCTTTCAGTGCTGACGGTAATGTTTCCCCGAAGAAACCAACCACTTTAACCGAGGT 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 GATATCTTTCAGTGCTGACGGTAATGTTTCCCCGAAGAAACCAACCACTTTAACCGAGGT 412
Query 555 TGCAAAGCAAAGAGAGCTGAGCGGGAACTTGCTAACCGAGGCGGATTTAAAGAGCAACAA 614
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 413 TGCAAAGCAAAGAGAGCTGAGCGGGAACTTGCTAACCGAGGCAGACTTAAAGAGCAACAA 472
Query 615 GCAGATATCAAGTGCTAAGATTGAAGAGATCAGCGGTCATGACATCTTTGCACCTCCATC 674
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 473 GCAGATATCAAGTGCTAAGATCGAAGAGATCAGCGGTCATGACATCTTTGGACCTCCATC 532
Query 675 TGAGATTCAGCCTCGATCTTTGGTTGCTGCACAGCAAGAAGCTAGAGGTAACAGAGACAT 734
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 TGAGATCCAGCCTCGATCTTTGGTTGCTGCACAGCAAGAAGCTAGAGGTAACAGAGACAT 592
Query 735 GGGAGAGCCTGCACCAAGGAACTTACGCACTTCTGTTAAAGTTTCCAACCCTGCAGGAGG 794
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 593 GGGAGAGCCTGCACCAAGGAACTTACGCACTTCTGTTAAAGTTTCCAATCCTGCAGGAGG 652
Query 795 ACAAAGCAACATACTATTCAGTGAAGAACCTGTTGTGAAGACATCAAAGAAGATACATAA 854
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 653 ACAAAGCAACATACTATTCAGTGAAGAACCTGTGGTGAAGACATCAAAGAAGATACATAA 712
Query 855 CCAGAAGTTTCAGGAACTCACAGGCAACGGCATTTTCAAAGGCGATGAATCACCTGGTAG 914
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 713 CCAGAAGTTTCAGGAACTCACAGGCAACGGCATTTTCAAAGGTGATGAATCACCTGGTAC 772
Query 915 TGCGGATAAGCAGTTAAGCTCAGCTAAACTCCGTGAAATGAGCGGAAACAACATTTTCGC 974
||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||
Sbjct 773 TGCGGATAAGCAGTTAAGCTCAGCTAAACTCCGGGAAATGAGTGGGAACAACATTTTCGC 832
Query 975 AGACGGAAAGTCAGAGTCCCGAGACTACTTTGGCGGCGTGAGGAAACCTCCCGGAGGTGA 1034
|||||| |||||||| ||||||||||||||||| || |||||||| || ||||| |||||
Sbjct 833 AGACGGGAAGTCAGAATCCCGAGACTACTTTGGTGGTGTGAGGAAGCCCCCCGGTGGTGA 892
Query 1035 AAGCAGCATTTCATTGGTCTAA 1056
||||||||||||||||||||||
Sbjct 893 AAGCAGCATTTCATTGGTCTAA 914
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45785623317
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5