BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G39860.1 Length=1226 Score E Sequences producing significant alignments: (Bits) Value Ahg943987 jgi|Araly1|943987|scaffold_700216.1 1491 0.0 > Ahg943987 jgi|Araly1|943987|scaffold_700216.1 Length=934 Score = 1491 bits (807), Expect = 0.0 Identities = 885/922 (96%), Gaps = 8/922 (1%) Strand=Plus/Plus Query 135 AGAAGAAAGAGaaaaaaaaGAGATGGAGAGAAACACGCCGGTGAGAAACCCTCACACTTC 194 ||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||| Sbjct 1 AGAAGAAAGAGAAAATAAA-A-ATGGAGAGAAACACGCCGGTGAGAAACCCTCACACTTC 58 Query 195 CACCGCCGATCTGCTTTCTTGGTCGGAAACTCCTCCTCCTCCTCACCACTCAACCCCTTC 254 ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 59 CACCGCCGATCTGCTTTCTTGGTCGGAAA---CTCCTCCTCCTCACCACTCAACCTCTTC 115 Query 255 CGCCGCTCGTTCTCACCAGCCGTCCGATGGAATCAGCAAGATTCTAGGCGGTGGTCAGAT 314 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 116 CGCCGCTCGTTCTCACCAGCCGTCCGATGGAATCAGCAAGATTCTCGGCGGTGGTCAGAT 175 Query 315 CACAGATGAAGAAGCCCAGTCGCTTAATAAGCTAAAGAATTGTTCAGGGTACAAGTTAAA 374 ||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 176 CACCGATGAGGAAGCTCAGTCGCTTAATAAGCTGAAGAATTGTTCAGGGTACAAGTTAAA 235 Query 375 AGAGATGACTGGTAGTGGCATATTTACTGATAAGGGAAAAGTTGGATCTGAATCCGATGC 434 |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| Sbjct 236 AGAGATGACTGGTAGTGGCATATTTAATGATAAGGGAAAAGTTGGGTCTGAATCCGATG- 294 Query 435 TACTACTGATCCAAAGACTGGACTCCGTTACTATCAGCAGACTCTGAATGGAATGAGTCA 494 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 295 --CTACTGATCCAAAGACTGGACTCCGTTACTATCAGCAGACGCTGAATGGAATGAGTCA 352 Query 495 GATATCTTTCAGTGCTGACGGTAATGTTTCCCCGAAGAAACCAACCACTTTAACCGAGGT 554 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 353 GATATCTTTCAGTGCTGACGGTAATGTTTCCCCGAAGAAACCAACCACTTTAACCGAGGT 412 Query 555 TGCAAAGCAAAGAGAGCTGAGCGGGAACTTGCTAACCGAGGCGGATTTAAAGAGCAACAA 614 |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 413 TGCAAAGCAAAGAGAGCTGAGCGGGAACTTGCTAACCGAGGCAGACTTAAAGAGCAACAA 472 Query 615 GCAGATATCAAGTGCTAAGATTGAAGAGATCAGCGGTCATGACATCTTTGCACCTCCATC 674 ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| Sbjct 473 GCAGATATCAAGTGCTAAGATCGAAGAGATCAGCGGTCATGACATCTTTGGACCTCCATC 532 Query 675 TGAGATTCAGCCTCGATCTTTGGTTGCTGCACAGCAAGAAGCTAGAGGTAACAGAGACAT 734 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 533 TGAGATCCAGCCTCGATCTTTGGTTGCTGCACAGCAAGAAGCTAGAGGTAACAGAGACAT 592 Query 735 GGGAGAGCCTGCACCAAGGAACTTACGCACTTCTGTTAAAGTTTCCAACCCTGCAGGAGG 794 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 593 GGGAGAGCCTGCACCAAGGAACTTACGCACTTCTGTTAAAGTTTCCAATCCTGCAGGAGG 652 Query 795 ACAAAGCAACATACTATTCAGTGAAGAACCTGTTGTGAAGACATCAAAGAAGATACATAA 854 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 653 ACAAAGCAACATACTATTCAGTGAAGAACCTGTGGTGAAGACATCAAAGAAGATACATAA 712 Query 855 CCAGAAGTTTCAGGAACTCACAGGCAACGGCATTTTCAAAGGCGATGAATCACCTGGTAG 914 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 713 CCAGAAGTTTCAGGAACTCACAGGCAACGGCATTTTCAAAGGTGATGAATCACCTGGTAC 772 Query 915 TGCGGATAAGCAGTTAAGCTCAGCTAAACTCCGTGAAATGAGCGGAAACAACATTTTCGC 974 ||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||| Sbjct 773 TGCGGATAAGCAGTTAAGCTCAGCTAAACTCCGGGAAATGAGTGGGAACAACATTTTCGC 832 Query 975 AGACGGAAAGTCAGAGTCCCGAGACTACTTTGGCGGCGTGAGGAAACCTCCCGGAGGTGA 1034 |||||| |||||||| ||||||||||||||||| || |||||||| || ||||| ||||| Sbjct 833 AGACGGGAAGTCAGAATCCCGAGACTACTTTGGTGGTGTGAGGAAGCCCCCCGGTGGTGA 892 Query 1035 AAGCAGCATTTCATTGGTCTAA 1056 |||||||||||||||||||||| Sbjct 893 AAGCAGCATTTCATTGGTCTAA 914 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45785623317 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5