BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G39870.1 Length=1715 Score E Sequences producing significant alignments: (Bits) Value Ahg490773 jgi|Araly1|490773|fgenesh2_kg.7__206__AT4G39870.1 2148 0.0 > Ahg490773 jgi|Araly1|490773|fgenesh2_kg.7__206__AT4G39870.1 Length=1634 Score = 2148 bits (1163), Expect = 0.0 Identities = 1491/1636 (91%), Gaps = 76/1636 (5%) Strand=Plus/Plus Query 103 aaggtaaaggaaagg-aataGTgagagagagagagggagagaTGGTCTTCTTGTTTAGAA 161 |||| ||| ||||| || || || || || | || |||||||||||||||||||||||| Sbjct 50 AAGG-AAAAAAAAGGTAA-AG-GAAAGGGATAAAGAGAGAGATGGTCTTCTTGTTTAGAA 106 Query 162 CATGTTGTTTCCAATTATTCTAAGAATGGCGTTTTAGGTAAATGATCACAGCTT-ATTAC 220 | |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| Sbjct 107 CTTGTTGTTTCCAATTTTTCTAAGAATGGCGTTTTAGGTAAATGATCACAGCTTAATTAC 166 Query 221 AGATGGAAGAGAAGCTGACTCAATTTGTGGTTTAGATTTGTCAAAGAGGATCGTGTGGAA 280 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 167 AGATGGAAGAGAAGCTGACTCAATTTGTGGTTTAGATTTTTCAAAGAGGATCGTGTGGAA 226 Query 281 TCTGAAAGTTTTCAATTTTCACTAAAAATAGGATTAGAGTTAAAAAGGAGGAAGAAGAAA 340 |||||||||||| || ||||||||||||||||| |||||||||||||||||||| || || Sbjct 227 TCTGAAAGTTTTTAA-TTTCACTAAAAATAGGA-TAGAGTTAAAAAGGAGGAAG-AGGAA 283 Query 341 TGGGGAAACACAAATCTTTCAGAAGCAAAGCAGTGCACTTTGTCACCGATCTCACCGCTG 400 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 284 TGGGGAAACACAAATCTTTCAGAAGCAAAGCAGTGCACTTTGTCACCGATCTCACCGCTG 343 Query 401 GTCTTCTTAATCCCATCTCTGATAAACcctcctccgctcatcctcctcctcctcTTCCGG 460 |||||||||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct 344 GTCTTCTTAATCCCATCTCTGATAAACCCTCCTCCG---------CTCGTCCTCTTCCGG 394 Query 461 ATGAGGAAGATGAGTCTAAGAGAAATCAGCTAGAGTCT-ACAACTGCAGAGCAGCCTAAG 519 |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| Sbjct 395 ATGAGGAAGATGAGTCTAAGAGAAATCAGCTAGAGTCTGTC-ACTGCAGAGCAGCCTAAG 453 Query 520 GATTTGGTTGACGAACCAGACACTTCTTCTTTCTCTGCATTCCTTGGTTCACTGTTATCT 579 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 454 GATTTGGTAGACGAACCAGACACTTCTTCTTTCTCTGCATTCCTTGGTTCACTGTTATCT 513 Query 580 TCAGATCCCAaagacaaaaggaaggatcaggatcca-gaggacgaagaagacgaggaaga 638 ||||||||||| ||||||| ||| ||||||||| || |||||||||||||| | ||||| Sbjct 514 TCAGATCCCAAGGACAAAAAGAACGATCAGGAT-CAGGAGGACGAAGAAGA--A-GAAGA 569 Query 639 agacgaagaagaagaTTCTGAGGCAGAAACAAGCGATACATCATCATCAT-CT--GCCAA 695 |||| |||||||||||||||||||||||||||||||||||||| | || ||||| Sbjct 570 AGAC------GAAGATTCTGAGGCAGAAACAAGCGATACATCATCATCCTCCTCGGCCAA 623 Query 696 TCCTACTAGAACTATGAAGGAGACTACTAGTGGTGGTGCTGCAAAGAAGAGTTTTTTGTC 755 |||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||| Sbjct 624 TCCTACTAGAACAATGAAGGAGGCTACTA---GTGGTGCTGCAAAGAAGAGTTTTTTGTC 680 Query 756 CAAGTACAAACAGCATTTTAGGAATTTTTACCAGGCTGTTAAGTTTCCCGGGGTCAAGGA 815 ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 681 TAAGTACAAACAGCATTTGAGGAACTTTTACCAGGCTGTTAAGTTTCCCGGGGTCAAGGA 740 Query 816 GCGAAAGGGAAATTCTGATGTGATACCAGATGATGAGGAGACTGAATATTATGATGGCTT 875 ||| ||||||||||||||||||| |||||||| ||| ||||||| | ||||||||||| Sbjct 741 GCGGAAGGGAAATTCTGATGTGACACCAGATGCTGAAGAGACTG---AGTATGATGGCTT 797 Query 876 AGAGATGAAGCCGATGCAGAATAATAATGTCAAAGAGGAAGTGACAGTAGTAGTGCAAGC 935 ||||||||||||||||||||||||||||||||||| |||| ||| | ||||||||| Sbjct 798 GGAGATGAAGCCGATGCAGAATAATAATGTCAAAGAAGAAGCAACA--A-TAGTGCAAGG 854 Query 936 AATTATACCTGAAATTTCAGAACCCTCTTTGCTTTTATCGGAGCAGTCTAGACGCTCCCT 995 ||||||||||||||||||||| |||||||||||||| ||||| ||||| ||| | | ||| Sbjct 855 AATTATACCTGAAATTTCAGAGCCCTCTTTGCTTTTGTCGGACCAGTCAAGATG-TTCCT 913 Query 996 T-TATACTTCACTTCCTGCGCTTGTTCAAGGGAGGAAATGGATATTGCTTTATAGTACAT 1054 | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 914 TATATACTTCACTTCCTGCTCTTGTTCAAGGGAGGAAATGGATATTGCTTTATAGTACAT 973 Query 1055 GGAGGCATGGTATATCACTATCCACGCTATACAGGAAAAGCCTTCTCTGGCCAGGTCTTA 1114 |||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| | Sbjct 974 GGAGGCATGGTATATCACTATCTACGCTGTACAGGAAAAGCCTTCTCTGGCCTGGTCTCA 1033 Query 1115 GCCTACTGGTTGTTGGAGACAGAAAAGGTTCGGTTTTTGGTGGTCTTGTTGAGGCACCTT 1174 || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1034 GCTTACTGGTTGTTGGAGACAGAAAAGGTTCAGTTTTTGGTGGTCTTGTTGAGGCACCTT 1093 Query 1175 TGATACCAACTGATAAAAAGTATCAGGGAACCAACAGTACCTTTGTTTTCACAAATAAAT 1234 |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| | Sbjct 1094 TGATACCAACTGATAAAAAGTATCAGGGAACCAATAGTACATTTGTTTTCACAAATAAGT 1153 Query 1235 CAGGACAACCCACAATATACCGTCCCACAGGCGCAAATCGGTTCTACACTTTATGCTCCA 1294 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1154 CAGGACAACCCACAATATACCGTCCCACAGGCGCAAATCGATTCTACACTTTATGCTCCA 1213 Query 1295 AGGAATTCCTAGCTCTGGGCGGTGGTGGACGGTTTGCTCTCTATCTAGACAGTGAGCTGC 1354 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1214 AGGAATTCCTAGCTCTAGGCGGTGGTGGACGGTTTGCTCTCTATCTAGACAGTGAGCTGC 1273 Query 1355 TAAGCGGATCGAGCGCTTACTCAGAGACGTATGGGAACTCTTGTCTCGCAGACTCTCAGG 1414 |||| ||||| || |||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct 1274 TAAGTGGATCAAGTGCTTACTCAGAGACATATGGGAACTCTTGTCTCGCAAACTCTCAGG 1333 Query 1415 ACTTTGATGTTAAGGAAGTGGAGCTATGGGGATTTGTGTATGGCTCAAAGTATGATGAGA 1474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1334 ACTTTGATGTTAAGGAAGTGGAGCTATGGGGATTTGTGTATGGCTCAAAGTATGATGAGA 1393 Query 1475 TTCTAGCTCACAGCAAAACAATGGAGCCTGGTCTTTGCAGATGGTCATGATCATTATAAA 1534 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1394 TTCTAGCTCACAGCAAAACAATGGAGCCTGGTCTTTGCAGATGGTCATGATCATTATAAA 1453 Query 1535 GAAAACCCAAATGAATTCAACTGAGA--TTCGTCTTTttgttgttgttgttgttgttgtt 1592 ||||| | |||||||||||| ||||| |||| ||| || ||||||||||| |||| Sbjct 1454 GAAAAACGAAATGAATTCAAGTGAGAGATTCG-CTTCTT-TTGTTGTTGTTATTGT---- 1507 Query 1593 gtATAAATCTGTAGTAAAAGAAATCTTGTTGTCTT-------GTAACTTGGCTAAAATCA 1645 | || ||||||||||||||||| |||||||||| |||||| ||||||||||| Sbjct 1508 --A-AA-TCTGTAGTAAAAGAAATGTTGTTGTCTTTACCTTTGTAACT-GGCTAAAATCA 1562 Query 1646 CATATATGTTACTCTCTCTCACTTGTAATGATGATTTT-G--A---AA-TAACAAAA-TA 1697 | | | |||||||||| || |||||||||||||| | | || |||||||| || Sbjct 1563 CTTCTCTGTTACTCTCGCTG----GTAATGATGATTTTTGGGACTGAAATAACAAAAATA 1618 Query 1698 AAACCACCTATTAGGC 1713 |||| ||||||||||| Sbjct 1619 AAACGACCTATTAGGC 1634 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64334423805 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5