BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39870.1
Length=1715
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490773 jgi|Araly1|490773|fgenesh2_kg.7__206__AT4G39870.1 2148 0.0
> Ahg490773 jgi|Araly1|490773|fgenesh2_kg.7__206__AT4G39870.1
Length=1634
Score = 2148 bits (1163), Expect = 0.0
Identities = 1491/1636 (91%), Gaps = 76/1636 (5%)
Strand=Plus/Plus
Query 103 aaggtaaaggaaagg-aataGTgagagagagagagggagagaTGGTCTTCTTGTTTAGAA 161
|||| ||| ||||| || || || || || | || ||||||||||||||||||||||||
Sbjct 50 AAGG-AAAAAAAAGGTAA-AG-GAAAGGGATAAAGAGAGAGATGGTCTTCTTGTTTAGAA 106
Query 162 CATGTTGTTTCCAATTATTCTAAGAATGGCGTTTTAGGTAAATGATCACAGCTT-ATTAC 220
| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 107 CTTGTTGTTTCCAATTTTTCTAAGAATGGCGTTTTAGGTAAATGATCACAGCTTAATTAC 166
Query 221 AGATGGAAGAGAAGCTGACTCAATTTGTGGTTTAGATTTGTCAAAGAGGATCGTGTGGAA 280
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 167 AGATGGAAGAGAAGCTGACTCAATTTGTGGTTTAGATTTTTCAAAGAGGATCGTGTGGAA 226
Query 281 TCTGAAAGTTTTCAATTTTCACTAAAAATAGGATTAGAGTTAAAAAGGAGGAAGAAGAAA 340
|||||||||||| || ||||||||||||||||| |||||||||||||||||||| || ||
Sbjct 227 TCTGAAAGTTTTTAA-TTTCACTAAAAATAGGA-TAGAGTTAAAAAGGAGGAAG-AGGAA 283
Query 341 TGGGGAAACACAAATCTTTCAGAAGCAAAGCAGTGCACTTTGTCACCGATCTCACCGCTG 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 284 TGGGGAAACACAAATCTTTCAGAAGCAAAGCAGTGCACTTTGTCACCGATCTCACCGCTG 343
Query 401 GTCTTCTTAATCCCATCTCTGATAAACcctcctccgctcatcctcctcctcctcTTCCGG 460
|||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 344 GTCTTCTTAATCCCATCTCTGATAAACCCTCCTCCG---------CTCGTCCTCTTCCGG 394
Query 461 ATGAGGAAGATGAGTCTAAGAGAAATCAGCTAGAGTCT-ACAACTGCAGAGCAGCCTAAG 519
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 395 ATGAGGAAGATGAGTCTAAGAGAAATCAGCTAGAGTCTGTC-ACTGCAGAGCAGCCTAAG 453
Query 520 GATTTGGTTGACGAACCAGACACTTCTTCTTTCTCTGCATTCCTTGGTTCACTGTTATCT 579
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 GATTTGGTAGACGAACCAGACACTTCTTCTTTCTCTGCATTCCTTGGTTCACTGTTATCT 513
Query 580 TCAGATCCCAaagacaaaaggaaggatcaggatcca-gaggacgaagaagacgaggaaga 638
||||||||||| ||||||| ||| ||||||||| || |||||||||||||| | |||||
Sbjct 514 TCAGATCCCAAGGACAAAAAGAACGATCAGGAT-CAGGAGGACGAAGAAGA--A-GAAGA 569
Query 639 agacgaagaagaagaTTCTGAGGCAGAAACAAGCGATACATCATCATCAT-CT--GCCAA 695
|||| |||||||||||||||||||||||||||||||||||||| | || |||||
Sbjct 570 AGAC------GAAGATTCTGAGGCAGAAACAAGCGATACATCATCATCCTCCTCGGCCAA 623
Query 696 TCCTACTAGAACTATGAAGGAGACTACTAGTGGTGGTGCTGCAAAGAAGAGTTTTTTGTC 755
|||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 624 TCCTACTAGAACAATGAAGGAGGCTACTA---GTGGTGCTGCAAAGAAGAGTTTTTTGTC 680
Query 756 CAAGTACAAACAGCATTTTAGGAATTTTTACCAGGCTGTTAAGTTTCCCGGGGTCAAGGA 815
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 681 TAAGTACAAACAGCATTTGAGGAACTTTTACCAGGCTGTTAAGTTTCCCGGGGTCAAGGA 740
Query 816 GCGAAAGGGAAATTCTGATGTGATACCAGATGATGAGGAGACTGAATATTATGATGGCTT 875
||| ||||||||||||||||||| |||||||| ||| ||||||| | |||||||||||
Sbjct 741 GCGGAAGGGAAATTCTGATGTGACACCAGATGCTGAAGAGACTG---AGTATGATGGCTT 797
Query 876 AGAGATGAAGCCGATGCAGAATAATAATGTCAAAGAGGAAGTGACAGTAGTAGTGCAAGC 935
||||||||||||||||||||||||||||||||||| |||| ||| | |||||||||
Sbjct 798 GGAGATGAAGCCGATGCAGAATAATAATGTCAAAGAAGAAGCAACA--A-TAGTGCAAGG 854
Query 936 AATTATACCTGAAATTTCAGAACCCTCTTTGCTTTTATCGGAGCAGTCTAGACGCTCCCT 995
||||||||||||||||||||| |||||||||||||| ||||| ||||| ||| | | |||
Sbjct 855 AATTATACCTGAAATTTCAGAGCCCTCTTTGCTTTTGTCGGACCAGTCAAGATG-TTCCT 913
Query 996 T-TATACTTCACTTCCTGCGCTTGTTCAAGGGAGGAAATGGATATTGCTTTATAGTACAT 1054
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 914 TATATACTTCACTTCCTGCTCTTGTTCAAGGGAGGAAATGGATATTGCTTTATAGTACAT 973
Query 1055 GGAGGCATGGTATATCACTATCCACGCTATACAGGAAAAGCCTTCTCTGGCCAGGTCTTA 1114
|||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| |
Sbjct 974 GGAGGCATGGTATATCACTATCTACGCTGTACAGGAAAAGCCTTCTCTGGCCTGGTCTCA 1033
Query 1115 GCCTACTGGTTGTTGGAGACAGAAAAGGTTCGGTTTTTGGTGGTCTTGTTGAGGCACCTT 1174
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1034 GCTTACTGGTTGTTGGAGACAGAAAAGGTTCAGTTTTTGGTGGTCTTGTTGAGGCACCTT 1093
Query 1175 TGATACCAACTGATAAAAAGTATCAGGGAACCAACAGTACCTTTGTTTTCACAAATAAAT 1234
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
Sbjct 1094 TGATACCAACTGATAAAAAGTATCAGGGAACCAATAGTACATTTGTTTTCACAAATAAGT 1153
Query 1235 CAGGACAACCCACAATATACCGTCCCACAGGCGCAAATCGGTTCTACACTTTATGCTCCA 1294
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1154 CAGGACAACCCACAATATACCGTCCCACAGGCGCAAATCGATTCTACACTTTATGCTCCA 1213
Query 1295 AGGAATTCCTAGCTCTGGGCGGTGGTGGACGGTTTGCTCTCTATCTAGACAGTGAGCTGC 1354
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1214 AGGAATTCCTAGCTCTAGGCGGTGGTGGACGGTTTGCTCTCTATCTAGACAGTGAGCTGC 1273
Query 1355 TAAGCGGATCGAGCGCTTACTCAGAGACGTATGGGAACTCTTGTCTCGCAGACTCTCAGG 1414
|||| ||||| || |||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 1274 TAAGTGGATCAAGTGCTTACTCAGAGACATATGGGAACTCTTGTCTCGCAAACTCTCAGG 1333
Query 1415 ACTTTGATGTTAAGGAAGTGGAGCTATGGGGATTTGTGTATGGCTCAAAGTATGATGAGA 1474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1334 ACTTTGATGTTAAGGAAGTGGAGCTATGGGGATTTGTGTATGGCTCAAAGTATGATGAGA 1393
Query 1475 TTCTAGCTCACAGCAAAACAATGGAGCCTGGTCTTTGCAGATGGTCATGATCATTATAAA 1534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1394 TTCTAGCTCACAGCAAAACAATGGAGCCTGGTCTTTGCAGATGGTCATGATCATTATAAA 1453
Query 1535 GAAAACCCAAATGAATTCAACTGAGA--TTCGTCTTTttgttgttgttgttgttgttgtt 1592
||||| | |||||||||||| ||||| |||| ||| || ||||||||||| ||||
Sbjct 1454 GAAAAACGAAATGAATTCAAGTGAGAGATTCG-CTTCTT-TTGTTGTTGTTATTGT---- 1507
Query 1593 gtATAAATCTGTAGTAAAAGAAATCTTGTTGTCTT-------GTAACTTGGCTAAAATCA 1645
| || ||||||||||||||||| |||||||||| |||||| |||||||||||
Sbjct 1508 --A-AA-TCTGTAGTAAAAGAAATGTTGTTGTCTTTACCTTTGTAACT-GGCTAAAATCA 1562
Query 1646 CATATATGTTACTCTCTCTCACTTGTAATGATGATTTT-G--A---AA-TAACAAAA-TA 1697
| | | |||||||||| || |||||||||||||| | | || |||||||| ||
Sbjct 1563 CTTCTCTGTTACTCTCGCTG----GTAATGATGATTTTTGGGACTGAAATAACAAAAATA 1618
Query 1698 AAACCACCTATTAGGC 1713
|||| |||||||||||
Sbjct 1619 AAACGACCTATTAGGC 1634
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64334423805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5