BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39880.1
Length=802
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490774 jgi|Araly1|490774|fgenesh2_kg.7__207__AT4G39880.1 889 0.0
Ahg952534 jgi|Araly1|952534|scaffold_85500002.1 228 6e-59
Ahg950419 jgi|Araly1|950419|scaffold_802306.1 228 6e-59
Ahg920073 jgi|Araly1|920073|scaffold_101354.1 228 6e-59
Ahg917589 jgi|Araly1|917589|Al_scaffold_0008_2340 224 7e-58
Ahg921082 jgi|Araly1|921082|scaffold_102363.1 222 3e-57
Ahg906443 jgi|Araly1|906443|Al_scaffold_0003_3571 169 4e-41
Ahg356872 jgi|Araly1|356872|fgenesh1_pg.C_scaffold_8000659 169 4e-41
> Ahg490774 jgi|Araly1|490774|fgenesh2_kg.7__207__AT4G39880.1
Length=608
Score = 889 bits (481), Expect = 0.0
Identities = 580/624 (93%), Gaps = 21/624 (3%)
Strand=Plus/Plus
Query 28 TTCATTTCTGACCTAAAAGCTCAGCTCCGATTTGAAAATGGGGAGTAGATTGGGAGGACG 87
|||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||
Sbjct 1 TTCATTTCTGACCTAAAA----A-CTCCGATTTCAAAATGGGGAGTAGATTGGGAGGACG 55
Query 88 AGTGGTTCATTTCGCGAATCTTCCGATTAAGCTTCTGATGCCTGCGAAGCTGACCAACAT 147
||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 56 AGTGGTTCATTTCGCGAATCTTCCGATTAAGCTTCTGATGCCTGCAAAGCTCACGAACAT 115
Query 148 TCACGAATTCGCGTTGAAAACGATTCCTTCCGCGTCCAAGATCGAGATCAAGCGAGTCCT 207
|||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 116 TCACGAATTCGCGTTGAAAACGATCCCTTCCGCGTCGAAGATCGAGATCAAACGAGTCCT 175
Query 208 GGAGTCGCTCTACGGATTCGATGTGGAGAAGGTGAATACTTTAAACATGGATGGGAAGAA 267
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 176 CGAGTCACTCTACGGATTCGATGTGGAGAAGGTGAATACACTAAACATGGATGGGAAGAA 235
Query 268 GAAGAAGCGTGGTGGTTTGTTGATAGCGAAAGCTGATTACAAGAAGGCTTACGTCACGCT 327
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 GAAGAAGCGTGGAGGTTTGTTGATAGCGAAAGCTGATTACAAGAAGGCTTACGTCACGCT 295
Query 328 ACGTAGTCCATTGTCGATTTCTAGGGATTTGTTTCCGGTGAAGTATATCGAGGAAGATAG 387
|||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 296 ACGTAGCCCTTTGTCGATTTCTAGGGATTTGTTTCCGGTGAAGTTTATCGAGGAAGATAG 355
Query 388 GAAGAGTAAAGTGAAAGGATCTAGCTTTGTTGAGGAAGAAGATGATAAGAAGAGTCATTG 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 GAAGAGTAAAGTGAAAGGATCTAGCTTTGTTGAGGAAGAAGATGATAAGAAGAGTCATTG 415
Query 448 GCTTGATCGTAAGGAGAAGAGGGAGATTGGTGGTTATGGTAAAGGTAAAGGTCGTCGAGG 507
||||||||| ||||||||||||||||| || |||||||| ||||||||||||||||| ||
Sbjct 416 GCTTGATCGCAAGGAGAAGAGGGAGATCGGCGGTTATGGAAAAGGTAAAGGTCGTCGTGG 475
Query 508 TGGTGAAAGGGCTAACT-CTCCGACGAGAGG-TGGTGCTGCGGCGGCGG-GG--ACGGCC 562
|||||||||| || || |||||||||| || |||||| |||||||||| || ||||||
Sbjct 476 AGGTGAAAGGGATA-CTTCTCCGACGAG-GGCTGGTGCGGCGGCGGCGGCGGGGACGGCC 533
Query 563 AAGTTTCCATGGAGCAACATGAGATTTGTTGGTAAGTAGGGTTTATGAGCAGATTATGAT 622
||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 534 AAGTTTCCATGGAGCAACATGAGATTTGTTGGTAAGTAGGGTTTATGAG--GAT------ 585
Query 623 CTGGGGTTTGTGTTTCTTTAGCTA 646
||||| ||||||||||||||||||
Sbjct 586 CTGGG-TTTGTGTTTCTTTAGCTA 608
> Ahg952534 jgi|Araly1|952534|scaffold_85500002.1
Length=285
Score = 228 bits (123), Expect = 6e-59
Identities = 193/225 (86%), Gaps = 11/225 (5%)
Strand=Plus/Plus
Query 380 GAAGATAGGAAGAGTAAAGTGAAAGGATCTAGCTTTGTTGAGGAAGAAGATGATAAGAAG 439
||||| | |||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 36 GAAGA-A-GAAGAGTAAAGTGAAAAGATCTAGCTTTGTTGAGGAAGAAGATGATAACAAG 93
Query 440 -A--GTCATTGGCTTGATCGTAAGGAGAAGAGGGAGATTGGTGGTTATGGTAAAGGTAAA 496
| ||||||||||||||| |||||||||||||| || || ||||||||||||||||||
Sbjct 94 TATCATCATTGGCTTGATCGCAAGGAGAAGAGGGAAATCGGCGGTTATGGTAAAGGTAAA 153
Query 497 GGTCGTCGAGGTGGTGAAAGGGCTAACTCTCCGACGA-GA---G-G-TGGTGCTGCGGCG 550
||| || | ||||||| ||| ||| | ||| |||||| || | | ||| || |||||
Sbjct 154 GGTTGTGGTGGTGGTGTAAGAGCTGATTCTTCGACGAGGATTGGTGTTGGGGCAACGGCG 213
Query 551 GCGGGGACGGCCAAGTTTCCATGGAGCAACATGAGATTTGTTGGT 595
||||| ||| | |||||||||||||||||||||||||||||||||
Sbjct 214 GCGGGAACGACGAAGTTTCCATGGAGCAACATGAGATTTGTTGGT 258
> Ahg950419 jgi|Araly1|950419|scaffold_802306.1
Length=301
Score = 228 bits (123), Expect = 6e-59
Identities = 193/225 (86%), Gaps = 11/225 (5%)
Strand=Plus/Plus
Query 380 GAAGATAGGAAGAGTAAAGTGAAAGGATCTAGCTTTGTTGAGGAAGAAGATGATAAGAAG 439
||||| | |||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 52 GAAGA-A-GAAGAGTAAAGTGAAAAGATCTAGCTTTGTTGAGGAAGAAGATGATAACAAG 109
Query 440 -A--GTCATTGGCTTGATCGTAAGGAGAAGAGGGAGATTGGTGGTTATGGTAAAGGTAAA 496
| ||||||||||||||| |||||||||||||| || || ||||||||| ||||||||
Sbjct 110 TATCATCATTGGCTTGATCGCAAGGAGAAGAGGGAAATCGGCGGTTATGGTGAAGGTAAA 169
Query 497 GGTCGTCGAGGTGGTGAAAGGGCTAACTCTCCGACGA-GA---G-G-TGGTGCTGCGGCG 550
|||||| | ||||||| ||| ||| | ||| |||||| || | | ||| || |||||
Sbjct 170 GGTCGTGGTGGTGGTGTAAGAGCTGATTCTTCGACGAGGATTGGTGTTGGGGCAACGGCG 229
Query 551 GCGGGGACGGCCAAGTTTCCATGGAGCAACATGAGATTTGTTGGT 595
||||| ||| | |||||||||||||||||||||||||||||||||
Sbjct 230 GCGGGAACGACGAAGTTTCCATGGAGCAACATGAGATTTGTTGGT 274
> Ahg920073 jgi|Araly1|920073|scaffold_101354.1
Length=296
Score = 228 bits (123), Expect = 6e-59
Identities = 193/225 (86%), Gaps = 11/225 (5%)
Strand=Plus/Plus
Query 380 GAAGATAGGAAGAGTAAAGTGAAAGGATCTAGCTTTGTTGAGGAAGAAGATGATAAGAAG 439
||||| | |||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 47 GAAGA-A-GAAGAGTAAAGTGAAAAGATCTAGCTTTGTTGAGGAAGAAGATGATAACAAG 104
Query 440 -A--GTCATTGGCTTGATCGTAAGGAGAAGAGGGAGATTGGTGGTTATGGTAAAGGTAAA 496
| ||||||||||||||| |||||||||||||| || || ||||||||||||||||||
Sbjct 105 TATCATCATTGGCTTGATCGCAAGGAGAAGAGGGAAATCGGCGGTTATGGTAAAGGTAAA 164
Query 497 GGTCGTCGAGGTGGTGAAAGGGCTAACTCTCCGACGA-GA---G-G-TGGTGCTGCGGCG 550
||| || | ||||||| ||| ||| | ||| |||||| || | | ||| || |||||
Sbjct 165 GGTTGTGGTGGTGGTGTAAGAGCTGATTCTTCGACGAGGATTGGTGTTGGGGCAACGGCG 224
Query 551 GCGGGGACGGCCAAGTTTCCATGGAGCAACATGAGATTTGTTGGT 595
||||| ||| | |||||||||||||||||||||||||||||||||
Sbjct 225 GCGGGAACGACGAAGTTTCCATGGAGCAACATGAGATTTGTTGGT 269
> Ahg917589 jgi|Araly1|917589|Al_scaffold_0008_2340
Length=339
Score = 224 bits (121), Expect = 7e-58
Identities = 191/223 (86%), Gaps = 11/223 (5%)
Strand=Plus/Plus
Query 380 GAAGATAGGAAGAGTAAAGTGAAAGGATCTAGCTTTGTTGAGGAAGAAGATGATAAGAAG 439
||||| | |||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 12 GAAGA-A-GAAGAGTAAAGTGAAAAGATCTAGCTTTGTTGAGGAAGAAGATGATAACAAG 69
Query 440 -A--GTCATTGGCTTGATCGTAAGGAGAAGAGGGAGATTGGTGGTTATGGTAAAGGTAAA 496
| ||||||||||||||| |||||||||||||| || || ||||||||||||||||||
Sbjct 70 TATCATCATTGGCTTGATCGCAAGGAGAAGAGGGAAATCGGCGGTTATGGTAAAGGTAAA 129
Query 497 GGTCGTCGAGGTGGTGAAAGGGCTAACTCTCCGACGA-GA---G-G-TGGTGCTGCGGCG 550
||| || | ||||||| ||| ||| | ||| |||||| || | | ||| || |||||
Sbjct 130 GGTTGTGGTGGTGGTGTAAGAGCTGATTCTTCGACGAGGATTGGTGTTGGGGCAACGGCG 189
Query 551 GCGGGGACGGCCAAGTTTCCATGGAGCAACATGAGATTTGTTG 593
||||| ||| | |||||||||||||||||||||||||||||||
Sbjct 190 GCGGGAACGACGAAGTTTCCATGGAGCAACATGAGATTTGTTG 232
> Ahg921082 jgi|Araly1|921082|scaffold_102363.1
Length=296
Score = 222 bits (120), Expect = 3e-57
Identities = 193/226 (85%), Gaps = 13/226 (6%)
Strand=Plus/Plus
Query 380 GAAGATAGGAAGAGTAAAGTGAAAGGATCTAGCTTTGTTGAGGAAGAAGATGATAAGAAG 439
||||| | |||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 47 GAAGA-A-GAAGAGTAAAGTGAAAAGATCTAGCTTTGTTGAGGAAGAAGATGATAACAAG 104
Query 440 -A--GTCATTGGCTTGATCGTAAGGAGAAGAGGGAGATTGGTGGTTATGGTAAAGGTAAA 496
| ||||||||||||||| |||||||||||||| || || ||||||||||||||||||
Sbjct 105 TATCATCATTGGCTTGATCGCAAGGAGAAGAGGGAAATCGGCGGTTATGGTAAAGGTAAA 164
Query 497 GGTCGTCGAGGTGGTG-AAAGGGCTAACTCTCCGACGA-GA---G-G-TGGTGCTGCGGC 549
||| || | ||||||| ||| ||| | ||| |||||| || | | ||| || ||||
Sbjct 165 GGTTGTGGTGGTGGTGTAAA-AGCTGATTCTTCGACGAGGATTGGTGTTGGGGCAACGGC 223
Query 550 GGCGGGGACGGCCAAGTTTCCATGGAGCAACATGAGATTTGTTGGT 595
|||||| ||| | |||||||||||||||||||||||||||||||||
Sbjct 224 GGCGGGAACGACGAAGTTTCCATGGAGCAACATGAGATTTGTTGGT 269
> Ahg906443 jgi|Araly1|906443|Al_scaffold_0003_3571
Length=324
Score = 169 bits (91), Expect = 4e-41
Identities = 151/178 (85%), Gaps = 12/178 (7%)
Strand=Plus/Plus
Query 379 GGAAGATAGGAAGAGTAAAGTGA-AAGGA-TCTAGCTTTGTTGAGGAAGAAGATGATAAG 436
|||||| | |||||||||||||| || || | ||||||||||||||||||||||||||||
Sbjct 137 GGAAGA-A-GAAGAGTAAAGTGATAA-GAGT-TAGCTTTGTTGAGGAAGAAGATGATAAG 192
Query 437 AAG-AG--TCATTGGCTTGATCGTAAGGAGAAGAGGGAGATTGGTGGTTATGGTAAAGGT 493
||| | ||||||||||||||| ||||||||| |||| || | |||||||||||||||
Sbjct 193 AAGTATCATCATTGGCTTGATCGCAAGGAGAAGTGGGAAATCGC-GGTTATGGTAAAGGT 251
Query 494 AAAGGTCGTCGAGGTGGTGAAAGGGCTAACTCTCCGACGAG-AGGTGGTGCTGCGGCG 550
|||| |||| | ||||||||||| ||||| ||| ||||||| | |||| |||||||
Sbjct 252 AAAGATCGTGGTGGTGGTGAAAGAGCTAATTCTTCGACGAGGAC-TGGTTTTGCGGCG 308
> Ahg356872 jgi|Araly1|356872|fgenesh1_pg.C_scaffold_8000659
Length=324
Score = 169 bits (91), Expect = 4e-41
Identities = 151/178 (85%), Gaps = 12/178 (7%)
Strand=Plus/Plus
Query 379 GGAAGATAGGAAGAGTAAAGTGA-AAGGA-TCTAGCTTTGTTGAGGAAGAAGATGATAAG 436
|||||| | |||||||||||||| || || | ||||||||||||||||||||||||||||
Sbjct 137 GGAAGA-A-GAAGAGTAAAGTGATAA-GAGT-TAGCTTTGTTGAGGAAGAAGATGATAAG 192
Query 437 AAG-AG--TCATTGGCTTGATCGTAAGGAGAAGAGGGAGATTGGTGGTTATGGTAAAGGT 493
||| | ||||||||||||||| ||||||||| |||| || | |||||||||||||||
Sbjct 193 AAGTATCATCATTGGCTTGATCGCAAGGAGAAGTGGGAAATCGC-GGTTATGGTAAAGGT 251
Query 494 AAAGGTCGTCGAGGTGGTGAAAGGGCTAACTCTCCGACGAG-AGGTGGTGCTGCGGCG 550
|||| |||| | ||||||||||| ||||| ||| ||||||| | |||| |||||||
Sbjct 252 AAAGATCGTGGTGGTGGTGAAAGAGCTAATTCTTCGACGAGGAC-TGGTTTTGCGGCG 308
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29621506509
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5