BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39890.1
Length=922
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943990 jgi|Araly1|943990|scaffold_700219.1 1096 0.0
Ahg899521 jgi|Araly1|899521|Al_scaffold_0004_171 501 4e-141
> Ahg943990 jgi|Araly1|943990|scaffold_700219.1
Length=686
Score = 1096 bits (593), Expect = 0.0
Identities = 650/677 (96%), Gaps = 6/677 (1%)
Strand=Plus/Plus
Query 140 GAACGGAACATATGGCTTCGGTTTCACCTTTGGCAAAGTTTAAACTGGTGTTCTTAGGAG 199
|||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 12 GAACCGAAC--ATGGCGGCGGTTTCACCTTTGGCAAAGTTTAAACTGGTGTTCTTAGGAG 69
Query 200 ACCAATCTGTCGGAAAAACCAGCATCATCACTCGTTTCATGTATGACAAATTCGACACCA 259
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 70 ATCAATCTGTCGGAAAAACCAGCATCATCACTCGTTTCATGTATGACAAATTCGACACCA 129
Query 260 CGTACCAGCCTACCATTGGAATCGATTTTCTATCGAAAACAATGTACCTCGAAGATCGAA 319
| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 130 CTTACCAGCCTACCATCGGAATCGATTTTCTTTCGAAAACAATGTACCTCGAAGATCGAA 189
Query 320 CAGTTCGTTTGCAGCTATGGGATACTGCTGGACAAGAAAGATTCAGGAGTCTAATCCCAA 379
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 190 CAGTTCGTTTGCAGCTATGGGATACGGCTGGACAAGAAAGATTCAGGAGTCTAATCCCAA 249
Query 380 GTTACATCAGAGATTCTTCTGTTGCCATTGTTGTATACGATGTATCCAATAGGCAAACGT 439
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 250 GTTACATCAGAGATTCTTCTGTTGCCATTGTTGTATATGATGTATCCAATAGGCAAACGT 309
Query 440 TTCTGAATACCTCGAAATGGATTGAGGATGTTCACAGAGAAAGAGGTCAAAGCAATGTTA 499
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 310 TTCTGAATACCACGAAATGGATTGAGGATGTACACAGAGAAAGAGGTCAAAGCAATGTTA 369
Query 500 TCATCGTTCTTGTTGGAAACAAAACTGATCTTGTTGAAAAACGGCAAGTATCAATCAGTG 559
| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 370 TTATTGTTCTTGTTGGAAACAAAACTGATCTTGTTGAAAAAAGGCAAGTATCAATCAGTG 429
Query 560 AAGGAGAAGACAAGGGTAAAGAGTATGGAGTGATGTTCATTGAGACCAGTGCCAAAGAAA 619
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 AAGGGGAAGACAAGGGTAAAGAGTATGGAGTGATGTTCATTGAGACCAGTGCCAAAGAAA 489
Query 620 ACTTCAACATTAAGGCTTTGTTCCGGAAGATTGCTGCAGCTTTACCCGGG-GTAGACTCA 678
| |||||||||||||||||||||||||||||||||||||||||| ||||| || ||| ||
Sbjct 490 ATTTCAACATTAAGGCTTTGTTCCGGAAGATTGCTGCAGCTTTA-CCGGGTGTGGACACA 548
Query 679 TATTCATTGGCAACAAAATCAGATGACATGGTTGATGTGAATCTAAAGACCACTTCAAAT 738
|||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 549 TATTCATTGGCAACGAAATCCGAGGACATGGTTGATGTGAATCTAAAGACCACTTCAAAT 608
Query 739 TCATCACAAGGTGAGCAACAAGGAGGAGCAGGTGGTGGTGGAGGCTGTTCTTGTTGATTC 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 TCATCACAAGGTGAGCAACAAGGAGGAGCAGGTGGTGGTGGAGGCTGTTCTTGTTGATTC 668
Query 799 AAAAATACATAATTCCA 815
|||| |||||| |||||
Sbjct 669 AAAA-TACATA-TTCCA 683
> Ahg899521 jgi|Araly1|899521|Al_scaffold_0004_171
Length=624
Score = 501 bits (271), Expect = 4e-141
Identities = 508/622 (82%), Gaps = 18/622 (3%)
Strand=Plus/Plus
Query 151 ATGGCTTCGGTTTCACCTTTGGCAAAGTTTAAACTGGTGTTCTTAGGAGACCAATCTGTC 210
||||| ||||| ||||| |||||||| | |||| |||||||| ||||||| |||||||||
Sbjct 1 ATGGCGTCGGTGTCACCATTGGCAAAATATAAATTGGTGTTCCTAGGAGATCAATCTGTC 60
Query 211 GGAAAAACCAGCATCATCACTCGTTTCATGTATGACAAATTCGACACCACGTACCAGCCT 270
|| |||||||||||||||||||||||||||||||| || |||||||| || |||||| ||
Sbjct 61 GGCAAAACCAGCATCATCACTCGTTTCATGTATGATAAGTTCGACACAACCTACCAGGCT 120
Query 271 ACCATTGGAATCGATTTTC-TATCGAAAACAATGTACCTCGAAGATCGAACAGTTCGTTT 329
|| |||||||| || ||| |||| |||||||||||||| |||||||| || ||||||||
Sbjct 121 ACTATTGGAATAGA-CTTCTTATCTAAAACAATGTACCTTGAAGATCGCACTGTTCGTTT 179
Query 330 GCAGCTATGGGATACTGCTGGACAAGAAAGATTCAGGAGTCTAATCCCAAGTTACATCAG 389
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 180 GCAGCTATGGGATACTGCTGGACAAGAAAGATTCAGGAGTCTAATACCAAGTTACATCAG 239
Query 390 AGATTCTTCTGTTGCCATTGTTGTATACGATGTATCCAATAGGCAAACGTTTCTGAATAC 449
||||||||||||||| ||||||| || |||||| ||||||| | | ||||| || ||
Sbjct 240 AGATTCTTCTGTTGCTGTTGTTGTTTATGATGTAGCCAATAGACTCTCATTTCTCAACAC 299
Query 450 CTCGAAATGGATTGAGGATGTTCACAGAGAAAGAGGTCAAAGCAATGTTATCATCGTTCT 509
|| || ||||| || || || | | ||||||| | || |||||||||| |||||
Sbjct 300 ATCCAAGTGGATCGAAGAAGTCCGTACTGAAAGAGCTG---GCGATGTTATCATTGTTCT 356
Query 510 TGTTGGAAACAAAACTGATCTTGTTGAAAAACGGCAAGTATCAATC-AGTGAAGGAGA-A 567
||| || ||||| ||||||||||| |||||| ||||||| || || | |||||||| |
Sbjct 357 TGTCGGTAACAAGACTGATCTTGTCGAAAAAAGGCAAGTTTCTATTGAA-GAAGGAGATA 415
Query 568 GACAAGGGTAAAGAGTATGGAGTGATGTTCATTGAGACCAGTGCCAAAGAAA-ACTTCAA 626
| ||| ||| || |||||||| |||||||| ||||| || || || | | | |||||
Sbjct 416 G-CAAAGGTCGTGAATATGGAGTTATGTTCATCGAGACAAGCGCGAAGGCAGGA-TTCAA 473
Query 627 CATTAAGGCTTTGTTCCGGAAGATTGCTGCAGCTTTACCCGGGG-TAGACTCATATTCAT 685
|||||| ||||||| || || || ||||| |||||||| ||| | || || ||||||
Sbjct 474 TATTAAGCCTTTGTTTCGCAAAATCGCTGCGGCTTTACC-GGGAATGGAATCGTATTCAA 532
Query 686 TGGCAACAAAATCAGATGACATGGTTGATGTGAATCTAAAGACC-ACTTCAAATTCATCA 744
| | ||||| || || |||||||| || || || || ||| ||||| ||||||||
Sbjct 533 ACACTA-AAAATGAG--GATATGGTTGACGTAAACCTGAA-ACCGACTTCGAATTCATCC 588
Query 745 CAAGGTGAGCAACAAGGAGGAG 766
|||||||| |||||||||||||
Sbjct 589 CAAGGTGATCAACAAGGAGGAG 610
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34196256549
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5