BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39900.1
Length=1201
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943992 jgi|Araly1|943992|scaffold_700221.1 1205 0.0
> Ahg943992 jgi|Araly1|943992|scaffold_700221.1
Length=779
Score = 1205 bits (652), Expect = 0.0
Identities = 730/768 (95%), Gaps = 3/768 (0%)
Strand=Plus/Plus
Query 255 TCTCTCTGCAATGAGTGATTTCTTCGATGAGGGGAAGCAGCAATTCGCAAGTGTTGCTGA 314
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 15 TCTGTCTGCAATGAGTGATTTCTTCGATGAGGGGAAGCAGCAATTCGCAAGTGTTGCAGA 74
Query 315 TGGGAATGCACCACTTAAGTATCCAAGCTTCAAGCTACCTAAGTCGACTTTCGGAGATAC 374
||||||||||||| | ||||||||| ||||||||| |||||||| || ||||||||||
Sbjct 75 TGGGAATGCACCAGTCAAGTATCCAGGCTTCAAGCCACCTAAGTTGAGTTTCGGAGATGG 134
Query 375 TGGCAAACATAGCGCCATTGATGTTTTCCCACTTCTTGTCAAGGAGGCTGCATTTCCTTT 434
|||||||||||| ||| |||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 135 TGGCAAACATAGTGCCGTTGATGTTTTTCCACTTCTTGTCAAGGAGGCTGCATATCCTTT 194
Query 435 AAAAGAAGACCGTGACATCGATACTTCACTGGTCCAAGACGTGTGTACTATCTCAGTCTT 494
| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 195 GATAGAAGACCGTGGCATCGATACTCCACTGGTCCAAGACGTGTGTACTATCTCAGTCTT 254
Query 495 ACCTGATGAAGGAAATACAATCCCACAATGTACCTCGCACTTTACTCTCCTGAGCTTCGT 554
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 255 ACCTGATGAAGGAAATACAATCCCACAATGTACCTCGCAGTTTACTCTCTTGAGCTTCGT 314
Query 555 CAAGGCTCTGCTTCCATCTAAAAATCAGATGTTGATCGATGCGCAACTGAATTGTCAGAA 614
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 315 CAAGGCTCTGCTTCCATCTAAAAATCAGATGTTGATAGATGCCCAACTGAATTGTCAGAA 374
Query 615 AACGCAGAACCGCATCAATGTGCTACTGGGAGGCACTGATTCCTATCAATCATGCGTTGT 674
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 375 AACGCAGAACCGCATCAATGTGCTACTGGGAGGCACAGATTCCTACCAATCATGCGTTGT 434
Query 675 GGACATAAACGTCGAGAAAGGGAATGGTGGTGAGACTGTGACATCTCATGACGAAGTTGT 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 GGACATAAACGTCGAGAAAGGGAATGGTGGTGAGACTGTGACATCTCATGACGAAGTTGT 494
Query 735 TGCAAGTATGAAATCCGAGAGTGTACATATGCAAAAGGTATTACAGAGACAAGCAAGTTT 794
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 495 TGCAAGTGTGAAATCTGAGAGTGTACATATGCAAAAGGTATTACAGAGACAAGCAAGCTT 554
Query 795 GAGCACTGATAAAGCTCTCTCCGAACGATGCCACGATGCACCAACAAACAGGTGGAGAAG 854
||| ||||| |||||| ||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 555 GAGTACTGACAAAGCTATCTCCGAGCGATGCCACGATGCACCAACGAACAGGTGGAGAAG 614
Query 855 ATACAAGCGTGCCGCTTCATTTGATTCAAGGAAAATCGTCATCCTATTCTCCATCTTATC 914
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 615 ATACAAGCGTGCCGCTTCATTTGATTCAAGAAAAATCGTCATCCTATTCTCCATCTTATC 674
Query 915 AAGTGTGGGAACATTGATATTGATCTACCTGACACTGAGAGTGAAGCAAAACGGAGACAA 974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 AAGTGTGGGAACATTGATATTGATCTACCTGACACTGAGAGTGAAGCAAAACGGAGACAA 734
Query 975 CAACAACAACAGCTTCAATCACATGTAAACTGTAGCATCTCTTTTGGC 1022
||| |||| ||||||||||||||||||||||| |||||||||||||
Sbjct 735 CAATAACA---GCTTCAATCACATGTAAACTGTAACATCTCTTTTGGC 779
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44832550392
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5