BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39910.1
Length=1598
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490777 jgi|Araly1|490777|fgenesh2_kg.7__210__AT4G39910.1 2475 0.0
> Ahg490777 jgi|Araly1|490777|fgenesh2_kg.7__210__AT4G39910.1
Length=1533
Score = 2475 bits (1340), Expect = 0.0
Identities = 1482/1547 (96%), Gaps = 24/1547 (2%)
Strand=Plus/Plus
Query 62 ctcttctctGAGGCTCGTTGGAAATCTGAATTCTCCGATCGAATCGAACCAATCGCAGAG 121
||||||||| ||||| ||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1 CTCTTCTCTTCGGCTCCTTGGAAATCTGAATTATCCGATCGAATCGAACC-ATCGCAGAG 59
Query 122 GCT-AAGAAGAGGACCTTTGAG--AGAATC-TCCGAGTCAGGATCAGAAAAAACGGTGAT 177
||| ||||||||| |||||| | |||| |||||||||||||||||||||||||||
Sbjct 60 GCTAAAGAAGAGG---TTTGAGTCA-AATCGGACGAGTCAGGATCAGAAAAAACGGTGAT 115
Query 178 ACGGAAGCTAGTTCTAGGGCTAATGGGCGCCGCGGGCTCCAAACTCGAGAAAGCTCTCGG 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 116 ACGGAAGCTAGTTCTAGGGCTAATGGGCGCCGCGGGCTCCAAACTCGAGAAAGCTCTCGG 175
Query 238 CGACCAGTTCCCCGAAGGTGAACGCTACTTTGGATTCGAGAATTTCGGCAACACTTGCTA 297
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 176 CGACCAGTTCCCCGAAGGAGAACGCTACTTTGGATTCGAGAATTTCGGCAACACTTGCTA 235
Query 298 CTGTAACAGCGTTTTGCAGGCTCTTTATTTCTGTGTTCCTTTCCGTGAACAACTGCTCGA 357
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 236 CTGTAACAGCGTTTTGCAGGCTCTTTATTTCTGTGTTCCTTTCCGTGAACAATTGCTTGA 295
Query 358 ATACTATACCAGTAATAAAAGCGTGGCCGATGCTGAAGAGAATCTTATGACCTGCCTGGC 417
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 296 ATACTATACCAGTAATAAAAGCGTCGCCGATGCTGAAGAGAATCTTATGACCTGCCTGGC 355
Query 418 AGACTTGTTTTCGCAGATAAGTTCCCAGAAGAAGAAAACAGGTGTTATTGCGCCTAAGCG 477
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 356 AGACTTGTTTTCGCAGATAAGTTCCCAGAAGAAGAAAACTGGTGTTATTGCGCCTAAGCG 415
Query 478 ATTTGTACAGAGGTTGAAGAAACAAAATGAGCTGTTTCGGAGTTATATGCACCAGGATGC 537
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 416 ATTTGTACAGAGGTTGAAGAAACAAAATGAGCTGTTTCGGAGCTATATGCACCAGGATGC 475
Query 538 ACATGAATTCCTGAATTATTTGCTGAATGAAGTTGTTGACATACTGGAGAAAGAGGCAAA 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 ACATGAATTCCTGAATTATTTGCTGAATGAAGTTGTTGACATACTGGAGAAAGAGGCAAA 535
Query 598 AGCTACAAAAACTGAACATGAAACCTCGTCATCATCATCTCCCGAGAAGATAGCAAATGG 657
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 536 AGCTACAAAAACTGAACATGAAACCTCGTCATCATCATCTCCCGAAAAGATTGCAAATGG 595
Query 658 ACTGAAAGTTCCTCAGGCAAATGGTGTTGTGCACAAGGAGCCTATTGTTACATGGGTGCA 717
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 596 ACTGAAAGTTCCTCAGGCAAATGGTGTTGTGCACAAAGAGCCTATTGTTACTTGGGTGCA 655
Query 718 CAATATTTTTCAGGGCATACTTACCAACGAGACAAGGTGTCTGCGATGTGAAACAGTGAC 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 CAATATTTTTCAGGGCATACTTACCAACGAGACAAGGTGTCTGCGATGTGAAACAGTGAC 715
Query 778 AGCAAGAGACGAAACATTCCTAGACCTAAGCCTTGATATCGAACAGAACAGTTCGATAAC 837
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 716 AGCAAGAGACGAAACATTCCTAGACCTAAGCCTTGATATTGAACAGAACAGTTCGATAAC 775
Query 838 TAGCTGTTTGAAAAACTTCAGCTCCACAGAGACGCTTCACGCTGAAGACAAATTCTTTTG 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 TAGCTGTTTGAAAAACTTCAGCTCCACAGAGACGCTTCACGCTGAAGACAAATTCTTTTG 835
Query 898 TGACAAATGCTGCAGCTTACAAGAAGCACA-AAAGCGGATGAAGATCAAGAAGCCACCAC 956
|||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||
Sbjct 836 TGACAAATGCTGCAGCTTACAAGAAGCACAGAAA-CGAATGAAGATCAAGAAGCCACCAC 894
Query 957 ACATCCTAGTGATTCATCTAAAACGATTCAAATACATCGAACAGCTAGGCCGCTACAAGA 1016
||||| |||| || |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 895 ACATCTTAGTCATCCATCTAAAGCGATTCAAATACATCGAACAGCTAGGCCGCTACAAGA 954
Query 1017 AGCTCTCCTATAGAGTTGTCTTCCCTTTGGAGCTAAAACTGAGCAACACAGTGGAACCAT 1076
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 AGCTCTCATATCGAGTTGTCTTCCCTTTGGAGCTAAAACTGAGCAACACAGTGGAACCAT 1014
Query 1077 ACGCAGACGTGGAGTACTCTCTGTTTGCAGTGGTGGTTCATGTGGGAAGTGGACCCAACC 1136
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1015 ACGCAGACGTGGAGTACTCTCTGTTTGCAGTGGTGGTTCATGTCGGAAGTGGACCTAACC 1074
Query 1137 ATGGTCATTACGTAAGCCTTGTGAAAAGCCATAACCATTGGCTCTTCTTTGATGATGAGA 1196
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 ATGGTCACTACGTCAGCCTTGTGAAAAGCCATAACCATTGGCTCTTCTTTGATGATGAGA 1134
Query 1197 ATGTTGAGATGATTGAAGAATCAGCTGTTCAAACATTCTTTGGATCGTCTCAGGAGTATT 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 ATGTTGAGATGATTGAAGAATCAGCTGTTCAAACATTCTTTGGATCGTCTCAGGAGTATT 1194
Query 1257 CGAGCAATACTGACCATGGTTACATCCTGTTCTATGAGAGCCTTGGACCGACCAAGTGAA 1316
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1195 CAAGCAATACTGATCATGGTTACATCCTGTTCTATGAGAGCCTTGGACCGACCAAGTAAA 1254
Query 1317 AGCTGAGAAAGCAGAAAGAAGGACTTTCTTCGttttttttCTCTT-AACTATTATTAGTA 1375
||||||||||||||||| || ||||||||||||||||||| |||| ||||||||||||||
Sbjct 1255 AGCTGAGAAAGCAGAAAAAATGACTTTCTTCGTTTTTTTT-TCTTTAACTATTATTAGTA 1313
Query 1376 ATGGTATATGTTTGTCTT-AAAAGTCAAACTCAATTGACAGTAACttttttttttttttg 1434
|||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 1314 ATGGTATATGTTTGTCTTTAAAAGT-AAACTCAATTGACAGTAACTTTTTTTTTTTTTT- 1371
Query 1435 gtttttGTTCTTTCTCTGTGTCTCTCTCCCAAAGATATTTGGTGAGTTTTAAAATTGGAA 1494
|| | | || ||||| | ||||||||||| ||||||||||||||||||||| ||||||
Sbjct 1372 -TTCTC-T-CTGTCTCTCTCTCTCTCTCCCAGAGATATTTGGTGAGTTTTAAA-TTGGAA 1427
Query 1495 GTTTTAACTGGAATTTGTATACTTTGAAAAAGGCCATGTACAGTTTATGGCAAATAACT- 1553
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1428 GTTTTAACTGGAATTTGTATACTTTGAAAAAGGCCATGTACAGTTTATGGCAAATAACTT 1487
Query 1554 CC-TTGTCTTTGTATC-TTTAGCAAAGGAAGAAGGTTACAATATGTT 1598
|| ||||||||||||| |||||||| |||||||| | ||||||||||
Sbjct 1488 CCCTTGTCTTTGTATCCTTTAGCAA-GGAAGAAGATAACAATATGTT 1533
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59877865140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5