BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39917.1
Length=249
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327944 jgi|Araly1|327944|fgenesh1_pm.C_scaffold_7000171 394 2e-109
> Ahg327944 jgi|Araly1|327944|fgenesh1_pm.C_scaffold_7000171
Length=249
Score = 394 bits (213), Expect = 2e-109
Identities = 237/249 (95%), Gaps = 0/249 (0%)
Strand=Plus/Plus
Query 1 ATGGCCAAGATCAAATCTTTAGATGTTATTACTGTCGCAATAATTTTGTTGTTGGTGATT 60
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1 ATGGCCAAGATCAAATCTTTAGATGTTATTACTATCGCAATAGTTTTGTTGTTGGTGATT 60
Query 61 GCAGATCAAGCAACTGCAATTACTGTTCAAGCCGATTGTATTGGACCGTGCAATGACGAT 120
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 61 GCAGGTCAAGCAACTGCAATTACTGTTCAAGCCGACTGTATTGGACCGTGCAATGACAAT 120
Query 121 TGCCAGCAGCTTTGCAAGTCGAAAGGTTACACAGACTGGACTTGTGCATCATTTAGAACC 180
|| |||||||||||||||||||||||||| | |||||||||||||||||||||||| |||
Sbjct 121 TGTCAGCAGCTTTGCAAGTCGAAAGGTTATAAAGACTGGACTTGTGCATCATTTAGGACC 180
Query 181 AAGTCGAGTTGTTGTTGCAAACCACCGAGACATCAAATCTTTGAACAAAATGCTCAATTG 240
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 181 AAGTCGAGTTGTTGTTGCAAACCACCGAGACATCCAATATTTGAACAAAATGCTCAATTG 240
Query 241 AACAACTAA 249
|||| ||||
Sbjct 241 AACAGCTAA 249
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8630546986
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5