BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39920.1
Length=1526
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943995 jgi|Araly1|943995|scaffold_700224.1 1661 0.0
> Ahg943995 jgi|Araly1|943995|scaffold_700224.1
Length=1094
Score = 1661 bits (899), Expect = 0.0
Identities = 1003/1053 (95%), Gaps = 7/1053 (1%)
Strand=Plus/Plus
Query 111 TCACACAACTGGGTAAAAACGATATGGAAGACGATGGTCAGAGCTCCGTC-GCCGAAACC 169
|||||||| ||||| |||||||||||||||| | | |||||||| || | |||||||||
Sbjct 1 TCACACAATTGGGT--AAACGATATGGAAGACAACGATCAGAGCTTCG-CTGCCGAAACC 57
Query 170 CTAGATCCGGCATTGCAGAAGAAGCACCATGATATGCTCGAGCGTCTCTCCGCTCGTCAC 229
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 58 CTAGATCCGGCATTGCAGAAGAAGCACCATGACATGCTCGAGCGTCTCTCTGCTCGTCAC 117
Query 230 CAAGCTCGAAAATCAGATTCACCTGACTCTTCCTCTTCGTCG---TCCTCCACTCTTGAA 286
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 118 CAAGCTCGAAAATCAGATTCACCTGACGCTTCCTCTTCGTCGTCCTCCTCCACTCTTGAA 177
Query 287 TCGACTTCCTCGTTTCTCGCTAAATTCTCCGATTCAAAGCGATCCATCGAGTCTCGGATC 346
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 TCGACATCCTCGTTTCTCGCTAAATTCTCCGATTCAAAGCGATCCATCGAGTCTCGGATC 237
Query 347 GCCGAGTCACGACTCGCTTCCTCCTCTACGGATTCGTCAAAGCTTAAGTCGGATCTTGCT 406
|| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 238 GCTGAGTCACGACTCGTTTCCTCCTCTACGGATTCGTCAAAGCTTAAATCGGATCTTGCT 297
Query 407 GAGATCTCCGTAGCCATTGACAATCTCGAGAAGCTTCTCGCTGAGAACTCGTATTTTCTT 466
|||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 298 GAGATCTCCGTAGCTATTAACAATCTGGAGAAGCTTCTCGCTGAGAACTCGTATTTTCTT 357
Query 467 CCTTCCTACGAGGTTCGATCCTCTCTGAAAATCGTATCCGATCTCAAACAGAGTCTCGAC 526
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 358 CCTTCCTACGAGGTTCGATCCTCTCTGAAAATTGTATCCGATCTCAAACAGAGTCTCGAT 417
Query 527 ATTCTCTCCGGCGAGTTAGTCCCGAAGAAGAAATTCTCGTTCAAGAGCAAATCAACGACC 586
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 418 ATTCTCTCCGGCGAGTTAGTCCCGAAGAAGAAGTTCTCGTTCAAGAGCAAATCAACGACC 477
Query 587 AAAAAGCCGGAATCAAAACTCCCGGAGATACAGAAACCCGACGTCGTTTTACCTCCGAAA 646
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 478 AAAAAGCCGGAATCAAAACTCCCGGAGATACAGAAATCCGACGCCGTTTTACCTCCGAAA 537
Query 647 CTCGTCCCCGTACGCGATTCTCCGGGATTGAGAAACAAACACGGAGAGACTCTTGTGAAA 706
||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 538 CTCCTCCCCGTACGCGATTCTCCGGGATTGAGAAACAAACACGGAGTGACTCTGGTGAAA 597
Query 707 AGCTTCGAAGGCTCGTCGATCGGAGAATTCACATTGTCGGATCTTGATTCATGTCAAGTA 766
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 AGTTTCAAAGGCTCGTCGATCGGAGAATTCACATTGTCGGATCTTGATTCATGTCAAGTA 657
Query 767 AAATTAACAGGAACGGTCAACGCTCTGTTCCTTCACCGACTGAAGAAGTGTAGTGTCTAC 826
|||||||||||||| || ||||||||||||||||||||| | |||||||| | ||| |||
Sbjct 658 AAATTAACAGGAACTGTTAACGCTCTGTTCCTTCACCGATTAAAGAAGTGCAATGTGTAC 717
Query 827 ACAGGTCCAGTGATTGGTTCGATTCTGATTGATGACGTAGAAGATTGTGTTCTGGTATTG 886
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 718 ACAGGTCCAGTGATTGGTTCGATTCTGATTGATGACGTAGAAGATTGTGTTCTTGTATTG 777
Query 887 GCGTCGCATCAGATCAGAATCCATTGCGCTAGGAAGAGTGATTTCTACCTGAGAGTGAGG 946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GCGTCGCATCAGATCAGAATCCATTGCGCTAGGAAGAGTGATTTCTACCTGAGAGTGAGG 837
Query 947 AGTCGTCCCATAATTGAAGACAGTAACGGTGTCAGATTTGCTCCTTATTGTTTGGATTAC 1006
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 838 AGTCGTCCCATAATTGAAGACAGCAATGGTGTCAGATTTGCTCCTTATTGTTTGGATTAC 897
Query 1007 AAAGGGATTGATGAAGATTTGAAGACGGCTGGTTTGGAGGAGGAGACTAACAACTGGGCC 1066
||||||||||||| |||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 898 CAAGGGATTGATGACGATTTGAAGACGGCGGGTTTGGAGGAGGAGACTAAGAATTGGGCC 957
Query 1067 AATGTGGATGATTTCCGGTGGCTGAGAGCTGTACAGTCGCCGAATTGGTCACTTTTGCCG 1126
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 958 AATGTGGATGATTTCCGGTGGCTGAGAGCTGTACAGTCGCCTAATTGGTCAGTTTTGCCG 1017
Query 1127 GAAGAAGAAAGGGTCTCTTTGCTTACCATTTCC 1159
||||||||||||||||||||| |||||||||||
Sbjct 1018 GAAGAAGAAAGGGTCTCTTTGGTTACCATTTCC 1050
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57135367500
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5