BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39940.1
Length=1244
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943996 jgi|Araly1|943996|scaffold_700225.1 1530 0.0
> Ahg943996 jgi|Araly1|943996|scaffold_700225.1
Length=921
Score = 1530 bits (828), Expect = 0.0
Identities = 893/924 (97%), Gaps = 5/924 (1%)
Strand=Plus/Plus
Query 51 GTTATTGGCCGTCGGATTCAATGGAAGGATTAGCTATCAGAGCATCTCGACCGTCGGTTT 110
||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 2 GTTCTTGGCCGTCGGATTCAATGGAAGGATTAGCTATCAGAGCATCGCGACCGTCAGTTT 61
Query 111 TCTGTTCTATTCCAGGTCTCGGCGGCGATTCCCACCGAAAACCTCCAAGTGACGGTTTCC 170
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 62 TCTGTTCTACTCCAGGTCTCGGCGGCGATTCTCACCGAAAACCTCCAAGTGACGGTTTCC 121
Query 171 TCAAGCTGCCTGCGTCGTCTATTCCGGCGGACAGCCGAAAATTAGTAGCGAATTCTACTT 230
||||||||||||||||||||||| |||||| | |||||||||||||||||||||| |||
Sbjct 122 TCAAGCTGCCTGCGTCGTCTATTGCGGCGG--A-CCGAAAATTAGTAGCGAATTCTGCTT 178
Query 231 CCTTTCATCCAATCTCAGCCGTTAACGTCTCTGCTCAAGCTTCCCTCACCGCTGATTTTC 290
| ||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 179 CTTTTCATCCAATATCCGCCATTAACGTCTCTGCTCAAGCTTCCCTCACCGCTGATTTTC 238
Query 291 CCGCCCTTTCAGAAACTATACTGAAAGAGGGAAGAAAT-AACGGAAAAGAGAAAGCAGAG 349
|||||||||||||||| || |||||||||||||| ||| |||||||||||||||||||||
Sbjct 239 CCGCCCTTTCAGAAACGATTCTGAAAGAGGGAAG-AATAAACGGAAAAGAGAAAGCAGAG 297
Query 350 AACATCGTGTGGCACGAGAGTTCGATATGCAGATGCGACAGACAACAACTTCTTCAACAA 409
||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 298 AACATCGTGTGGCACGAGAGTTCAATCTGTAGATGCGACAGACAACAACTTCTTCAACAA 357
Query 410 AAGGGTTGTGTCGTTTGGATCACTGGTCTCAGTGGTTCAGGGAAAAGCACTGTTGCTTGT 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 AAGGGTTGTGTCGTTTGGATCACTGGTCTCAGTGGTTCAGGGAAAAGCACTGTTGCTTGT 417
Query 470 GCACTAAGTAAAGCATTGTTTGAAAGAGGCAAACTTACTTACACACTCGACGGCGACAAT 529
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 418 GCACTAAGTAAAGCATTGTTTGAAAAAGGCAAACTTACTTACACACTCGACGGCGACAAT 477
Query 530 GTCCGTCACGGCCTTAACCGTGACCTCACTTTCAAAGCAGAGCACCGCACCGAAAACATT 589
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 478 GTCCGTCACGGCCTTAACCGTGACCTCACTTTCAAAGCAGAGGACCGCACCGAAAACATT 537
Query 590 AGAAGAATTGGTGAGGTGGCTAAGTTGTTTGCTGACGTCGGAGTCATTTGTATAGCAAGT 649
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 538 AGAAGAATTGGTGAGGTGGCTAAGTTGTTTGCTGACGTTGGAGTCATTTGTATAGCAAGT 597
Query 650 TTGATTTCTCCGTACCGGAGAGACAGAGACGCGTGCCGGTCCTTGTTACCTGACGGCGAT 709
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 598 TTGATTTCTCCGTACCGGAGAGACAGAGACGCGTGCCGGTCCTTGTTACCTGATGGCGAT 657
Query 710 TTCGTCGAGGTCTTCATGGACGTTCCTCTTCATGTGTGCGAGTCGAGAGATCCAAAGGGG 769
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 658 TTCGTCGAGGTCTTCATGGACGTTCCTCTTCATGTGTGCGAGTCAAGAGATCCAAAGGGG 717
Query 770 TTGTACAAGCTTGCACGTGCAGGCAAAATCAAAGGCTTCACTGGAATCGACGACCCTTAC 829
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 718 CTGTACAAGCTTGCACGTGCCGGCAAAATCAAAGGCTTCACTGGAATCGACGACCCTTAC 777
Query 830 GAGGCACCAGTGAATTGCGAGGTAGTGCTGAAACACACAGGAGACGACGAGTCGTGTTCG 889
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 778 GAGGCACCAGTGAATTGCGAGGTAGTGCTGAAACACACAGGAGACGACGATTCGTGTTCG 837
Query 890 CCACGTCAGATGGCTGAGAACATCATCTCTTACCTGCAAAACAAAGGTTATCTTGAGGGC 949
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 838 CCACGTCAGATGGCTGAGAACATTATCTCTTACCTGCAAAACAAAGGTTACCTTGAGGGC 897
Query 950 TAAGTCAAAGTCGGAAAAATCAAC 973
||||||||||||||||||||||||
Sbjct 898 TAAGTCAAAGTCGGAAAAATCAAC 921
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46471835823
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5