BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39950.1
Length=1986
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490780 jgi|Araly1|490780|fgenesh2_kg.7__213__AT4G39950.1 3020 0.0
Ahg481097 jgi|Araly1|481097|fgenesh2_kg.4__157__AT2G22330.1 1354 0.0
> Ahg490780 jgi|Araly1|490780|fgenesh2_kg.7__213__AT4G39950.1
Length=1865
Score = 3020 bits (1635), Expect = 0.0
Identities = 1808/1888 (96%), Gaps = 25/1888 (1%)
Strand=Plus/Plus
Query 3 CCATGCAGAGACAAC-AGAAACCACAACAAAAACTTTGAGTCCTCTTCTTCTCTATACAC 61
||||||||||| ||| ||||| ||||||||||||||||| |||||||||||| |||||||
Sbjct 1 CCATGCAGAGAAAACAAGAAA-CACAACAAAAACTTTGAATCCTCTTCTTCTTTATACAC 59
Query 62 AAACATGAACACTTTTACCTCAAACTCTTCGGATCTCACTACCACTGCAACCGAAACATC 121
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 60 AAACATGGACACTTTTACCTCAAACTCTTCGGTTCTCACTACCACTGCAACCGAAACATC 119
Query 122 GTCCTTTAGCACCTTGTATCTCCTCTCAACACTTCAAGCTTTTGTGGCTATAACCTTAGT 181
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 120 GTCGTTTAGCACCTTGTATCTCCTCTCAACACTTCAAGCCTTTGTGGCTATAACCTTAGT 179
Query 182 GATGCTACTCAAGAAATTGATGACGGATCCCAACAAAAAGAAACCGTA-TCTGCCACCGG 240
|||||||||||||||| ||||||| ||||||||||||||||||| | | ||| || ||||
Sbjct 180 GATGCTACTCAAGAAACTGATGACAGATCCCAACAAAAAGAAACTG-ACTCTCCCGCCGG 238
Query 241 GTCCCACAGGATGGCCGATCATTGGAATGATTCCGACGATGCTAAAGAGCCGGCCCGTTT 300
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 239 GTCCCACAGGATGGCCGATCATCGGAATGATTCCGACGATGCTAAAGAGCCGTCCCGTTT 298
Query 301 TCCGGTGGCTCCACAGCATCATGAAGCAGCTCAATACTGAGATAGCATGCGTGAAGTTAG 360
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 299 TCCGGTGGCTCCACAGCATCATGAAGCAGCTCAATACTGAGATAGCCTGCGTGAGGTTAG 358
Query 361 GAAACACTCATGTGATCACCGTCACGTGCCCTAAGATAGCACGTGAGATACTCAAGCAAC 420
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 359 GAAACACTCACGTGATCACCGTCACGTGCCCTAAGATAGCACGTGAGATGCTCAAGCAAC 418
Query 421 AAGACGCTCTCTTCGCGTCGAGGCCTTTAACTTACGCTCAGAAGATCCTCTCTAACGGCT 480
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 AAGACGCTCTCTTCGCCTCGAGGCCTTTAACTTACGCTCAGAAGATCCTCTCTAACGGCT 478
Query 481 ACAAAACCTGCGTGATCACTCCCTTTGGTGACCAATTCAAGAAAATGAGGAAAGTTGTGA 540
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 479 ACAAAACCTGCGTGATCACTCCCTTTGGTGACCAATTCAAGAAAATGAGAAAAGTTGTGA 538
Query 541 TGACGGAACTCGTATGTCCAGCGAGACACAGGTGGCTCCACCAGAAGAGATCAGAAGAAA 600
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 539 TGACGGAACTCGTTTGTCCAGCGAGACACCGGTGGCTCCACCAGAAGAGATCAGAAGAAA 598
Query 601 ACGATCATTTAACCGCTTGGGTATACAACATGGTTAAGAACTCGGGCTCTGTCGATTTCC 660
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 599 ACGATCATTTAACCGCTTGGGTATACAACATGGTTAAGAACTCGGGCTCTGTAGATTTCC 658
Query 661 GGTTCATGACTAGGCATTACTGTGGAAATGCAATCAAGAAGCTTATGTTCGGGACGAGAA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 659 GGTTCATGACTAGGCATTACTGTGGAAATGCAATCAAGAAGCTTATGTTCGGGACAAGAA 718
Query 721 CGTTCTCTAAGAACACTGCACCTGACGGTGGACCCACCGTAGAAGATGTAGAGCACATGG 780
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 719 CGTTCTCTAAGAACACTGCACCTGACGGTGGACCGACCGTAGAAGATGTAGAGCACATGG 778
Query 781 AAGCAATGTTTGAAGCATTAGGGTTTACCTTCGCTTTTTGCATCTCTGATTATCTGCCGA 840
|||| ||||||||||||||||||||||| || |||||||| |||||||||||||| ||||
Sbjct 779 AAGCTATGTTTGAAGCATTAGGGTTTACGTTTGCTTTTTGTATCTCTGATTATCTACCGA 838
Query 841 TGCTCACTGGACTTGATCTTAACGGTCACGAGAAGATTATGAGAGAATCAAGTGCGATTA 900
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 839 TGCTCACTGGACTTGATCTTAACGGTCACGAGAAGATTATGAGAGAATCGAGTGCGATTA 898
Query 901 TGGACAAGTATCATGACCCAATCATCGACGAGAGGATCAAGATGTGGAGAGAAGGAAAGA 960
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TGGATAAGTATCATGACCCAATCATCGACGAGAGGATCAAGATGTGGAGAGAAGGAAAGA 958
Query 961 GAACTCAAATCGAAGATTTTCTTGATATTTTCATCTCTATCAAAGACGAACAAGGCAACC 1020
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 959 GAACTCAAATCGAAGATTTTCTTGATATTTTCATCTCTATCAAGGACGAAGAAGGCAACC 1018
Query 1021 CATTGCTTACCGCCGATGAAATCAAACCCACCATTAAGGAGCTTGTAATGGCGGCGCCAG 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 CATTGCTTACCGCCGATGAAATCAAACCCACCATTAAGGAGCTTGTAATGGCGGCGCCAG 1078
Query 1081 ACAATCCATCAAACGCCGTGGAATGGGCCATGGCGGAGATGGTGAACAAACCGGAGATTC 1140
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 ACAATCCATCAAACGCCGTCGAATGGGCCATGGCGGAGATGGTGAACAAACCGGAGATTC 1138
Query 1141 TCCGTAAAGCAATGGAAGAGATCGACAGAGTCGTCGGGAAAGAGAGACTCGTTCAAGAAT 1200
||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| ||||
Sbjct 1139 TCCGTAAAGCAATGGAAGAAATCGACAGAGTCGTCGGAAAAGAAAGACTCGTTCAGGAAT 1198
Query 1201 CCGACATCCCAAAACTAAACTACGTCAAAGCTATCCTCCGCGAAGCTTTCCGTCTCCATC 1260
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1199 CCGACATCCCAAAACTAAACTACGTCAAAGCTATCCTCCGTGAAGCTTTCCGTCTCCATC 1258
Query 1261 CCGTCGCCGCCTTCAACCTCCCCCACGTGGCACTTTCTGACACAACCGTCGCCGGATATC 1320
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1259 CCGTCGCCGCCTTTAACCTCCCACACGTGGCACTTTCTGACACAACCGTCGCCGGATATC 1318
Query 1321 ACATCCCTAAAGGAAGTCAAGTCCTTCTTAGCCGATATGGGCTGGGCCGTAACCCAAAAG 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1319 ACATCCCTAAAGGAAGTCAAGTCCTTCTTAGCCGATATGGGCTGGGCCGTAACCCGAAAG 1378
Query 1381 TTTGGGCCGACCCACTTTGCTTTAAACCGGAGAGACATCTCAACGAATGCTCCGAAGTTA 1440
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1379 TTTGGGCCGACCCACTTAGCTTTAAACCGGAGAGACATCTCAACGAATGCTCCGAAGTCA 1438
Query 1441 CTTTGACCGAGAACGATCTCCGGTTTATCTCGTTCAGTACCGGGAAAAGAGGTTGTGCGG 1500
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
Sbjct 1439 CTTTGACCGAGAACGATCTTCGGTTTATCTCGTTTAGTACCGGGAAAAGAGGTTGTGCTG 1498
Query 1501 CTCCGGCGCTAGGAACGGCGTTGACCACGATGATGCTCGCGAGACTTCTTCAAGGTTTCA 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 CTCCGGCGCTAGGAACGGCGTTGACCACGATGATGCTCGCGAGACTTCTTCAAGGTTTCA 1558
Query 1561 CTTGGAAGCTACCTGAGAATGAGACACGTGTCGAGCTGATGGAGTCTAGTCACGATATGT 1620
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 1559 CTTGGAAGCTACCTGAGAATGAGACACGTGTCGAGCTGATGGAATCTAGTCACGATTTGT 1618
Query 1621 TTCTGGCTAAACCGTTGGTTATGGTCGGTGACCTTAGATTGCCGGAGCATCTCTACCCGA 1680
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1619 TTCTGGCTAAACCGTTGGTTATGGTCGGTGAGCTGAGATTGCCGGAGCATCTCTACCCGA 1678
Query 1681 CGGTGAAGTGAGATGAGACGACGCCGTATATATTTTATGAAACTACTTTTATATAATCGC 1740
||||||||||||||||||||||||||||||||||||||||||| | | | | |
Sbjct 1679 CGGTGAAGTGAGATGAGACGACGCCGTATATATTTTATGAAAC--C----A-A----C-C 1726
Query 1741 CCAACCAAGTTTGGTCAATTCCGGTTACCAGAAGATAATTGGTCAAATTGTGAACAAACT 1800
|| |||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 1727 --AA----GTTTGGTCAATTCCGGTTACCAAAAGATAATTGGTCAATTTGTGAACAAACT 1780
Query 1801 TGTGTGTTGGTTTCTTGGTTCTTTTTGGGACACTTGAATTGTGTCTCCTTTACCTCTTCT 1860
||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1781 TGTGTGTTGGT--CTTGGTTCTTTTGGGGACACTTGAATTGTGTCTCCTT-ACCTCTTCT 1837
Query 1861 TTTGTTGTTTTCAATAAAAACTTTTATT 1888
||||||||||||||||||||||||||||
Sbjct 1838 TTTGTTGTTTTCAATAAAAACTTTTATT 1865
> Ahg481097 jgi|Araly1|481097|fgenesh2_kg.4__157__AT2G22330.1
Length=1854
Score = 1354 bits (733), Expect = 0.0
Identities = 1351/1647 (82%), Gaps = 51/1647 (3%)
Strand=Plus/Plus
Query 75 TTTA-CCTCAAACTCTTCGGATCTCACTACC-ACTGCAA---CCGAAACATCGTCCTTTA 129
|||| | |||||||||||||||||| ||| | | ||| ||| ||| ||||||||||
Sbjct 34 TTTAGCTTCAAACTCTTCGGATCTCGGGACCAAGT-CAAGTCCCGGAACGTCGTCCTTTA 92
Query 130 GCACCTTGTATCTCCTCTCAACACTTCAAGCTTTTGTGGCTATAACCT-TAGTGATGCTA 188
|| | ||||||| ||| ||||| ||||||| |||| || || || | ||||| |
Sbjct 93 CCAACATGTATCTTCTCACAACATTTCAAGCCCTTGTAGCCAT-TTCTCTCTTGATGATT 151
Query 189 CTCAAGAAATTGATGACGGATC-CCAAC-AAA-AAGAA--ACCGT-ATCTGCCACCGGGT 242
||||||||||| | | | ||| | || ||| ||||| | | ||| || || ||
Sbjct 152 CTCAAGAAATTAAAGTC--ATCTTC-ACGAAACAAGAAGTTGCATCCTCTCCCGCCAGGA 208
Query 243 CCCACAGGATGGCCGATCATTGGAATGATTCCGACGATGC-TAAAGAGCCGGCCCGTTTT 301
||||| || | || || |||||||||||||| |||||| |||| | ||| || |||||
Sbjct 209 CCCACCGGTTTTCCAATTGTTGGAATGATTCCGGCGATGCTTAAA-AACCGTCCAGTTTT 267
Query 302 CCGGTGGCTCCACAGCATCATGAAGCAGCTCAATACTGAGATAGCATGCGTGAAGT-TAG 360
|||||||||||||||| |||||||| |||| || || |||||||| || ||| || |||
Sbjct 268 CCGGTGGCTCCACAGCCTCATGAAGGAGCTTAACACGGAGATAGCTTGTGTG-CGTCTAG 326
Query 361 GAAACACTCATGTGATCACC-GTCACGTGCCCTAAGATAGCACGTGAGATACTCAAGCAA 419
|||||||||| |||||| || || || || |||||||| ||||||||||| ||||||||
Sbjct 327 GAAACACTCACGTGATC-CCTGTGACATGTCCTAAGATTGCACGTGAGATTTTCAAGCAA 385
Query 420 CAAGACGCTCTCTTCGCGTCGAGGCCTTTAACTTACGCTCAGAAGATCCTCTCTAACGGC 479
|||||||| ||||||||||| || || | ||||| ||||| ||||||||||| ||||||
Sbjct 386 CAAGACGCACTCTTCGCGTCAAGACCACTCACTTATGCTCAAAAGATCCTCTCCAACGGC 445
Query 480 TACAAAACCTGCGTGATCACTCCCTTTGGTGACCAATTCAAGAAAATGAGGAAAGTTG-T 538
|||||||||||||||||||| || ||||| || ||||||||||| |||||||||| || |
Sbjct 446 TACAAAACCTGCGTGATCACACCGTTTGGCGAACAATTCAAGAAGATGAGGAAAG-TGAT 504
Query 539 GATGACGGA-ACTCGTATGTCCAGCGAGACACAGGTGGCTCCACCAGAAGAGATCAGAAG 597
|||||||| | | || ||||| ||||||||| | ||||| ||| | || ||| | || |
Sbjct 505 CATGACGGAGA-TTGTTTGTCCGGCGAGACACCGATGGCTACACGACAATAGAGCTGAGG 563
Query 598 AAAACGATCATTTAACCGCTTGGGTATACAACATGGTTAAGAACTC-GGGCTCTGTCGAT 656
||| |||||| || ||||||||| | |||||||||||||| ||||| | || | ||||||
Sbjct 564 AAACCGATCACTTGACCGCTTGGCTTTACAACATGGTTAAAAACTCTGAGC-CAGTCGAT 622
Query 657 TTCCGGTTCATGACTAGGCATTACTGTGGAAATGCAATCAAGAAGCTTATGTTCGGGACG 716
|||| || | || |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 623 CTCCGTTTTGTTACGAGGCATTACTGTGGAAATGCAATCAAGAGGCTTATGTTCGGGACG 682
Query 717 AGAACGTTCTCTAAGAACACTG-CACCTGACGGTGGACCCACCGTAGAAGATGTAGAGCA 775
|| |||||||| |||| || | ||| || |||||||| || | |||||| | |||||
Sbjct 683 AGGACGTTCTCGGAGAAAACCGAAACC-GATGGTGGACCGACTTTGGAAGATATCGAGCA 741
Query 776 CATGGAAGCAATGTTTGAAGCATTAGGGTTTACCTTCGCTTTTTGCATCTCTGATTATCT 835
||||| | ||||| || | ||||||||||| || || ||||| | || ||||||||
Sbjct 742 TATGGATGGTATGTTCGAGGGGTTAGGGTTTACGTTTGCGTTTTGTGTATCGGATTATCT 801
Query 836 GCCGATGCTCACTGGACTT-GATCTTAACGGTCACGAGAAGATTATGAGAGAATCAAGTG 894
||||| || || ||| || ||||| ||||| || || ||||||||||||||| | ||||
Sbjct 802 ACCGATACTTACGGGA-TTGGATCTAAACGGACATGAAAAGATTATGAGAGAAGCTAGTG 860
Query 895 CGATTATGGACAAGTATCATGACCCAATCATCGACGAGAGGATCAAGATGTGGAGAGAAG 954
| || ||||| || ||||| || || || || || |||||||| ||||||||||||||||
Sbjct 861 CAATCATGGATAAATATCACGATCCTATTATTGATGAGAGGATTAAGATGTGGAGAGAAG 920
Query 955 GAAAGAGAACTCAA-ATCGAAGATTTTCTTGATATTTTCATCTCTATCAAAGACGAA-CA 1012
| ||||||||| || |||||||||||||| ||||||||||| |||||||| |||||| |
Sbjct 921 GTAAGAGAACT-AAGATCGAAGATTTTCTAGATATTTTCATTTCTATCAAGGACGAAGC- 978
Query 1013 AGGCAACCCATTGCTTACCGCCGATGAAATCAAACCCACCATTAAGGAGCTTGTAATGGC 1072
||| | || ||||||||||| |||||||||||||| ||||||||||| |||||||||||
Sbjct 979 TGGCCAGCCTTTGCTTACCGCTGATGAAATCAAACCAACCATTAAGGAACTTGTAATGGC 1038
Query 1073 GGCGCCAGACAATCCATCAAACGCCGTGGAATGGGCCATGGCGGAGATGGTGAACAAACC 1132
|||||| ||||| |||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1039 GGCGCCGGACAACCCATCAAACGCCGTGGAATGGGCCATGGCGGAGATGATAAACAAACC 1098
Query 1133 GGAGATTCTCCGTAAAGCAATGGAAGAGATCGACAGAGTCGTCGGGAAAGAGAGACTCGT 1192
|||||| |||| ||||| |||||||||||||| ||||||||||| ||||| ||| ||||
Sbjct 1099 GGAGATCCTCCACAAAGCTATGGAAGAGATCGATAGAGTCGTCGGCAAAGAAAGATTCGT 1158
Query 1193 TCAAGAATCCGACATCCCAAAACTAAACTACGTCAAAGCTATCCTCCGCGAAGCTTTCCG 1252
||||||||||| ||||||||||| |||||| | |||||||| |||| |||||||||||
Sbjct 1159 CCAAGAATCCGATATCCCAAAACTTAACTACCTTAAAGCTATTATCCGAGAAGCTTTCCG 1218
Query 1253 TCTCCATCCCGTCGCCGCCTTCAACCTCCCCCACGTGGCACTTTCTGACACAACCGTCGC 1312
||| |||||||||||||||||||||||||| ||||||||||| || ||||| ||||||||
Sbjct 1219 TCTTCATCCCGTCGCCGCCTTCAACCTCCCACACGTGGCACTCTCCGACACGACCGTCGC 1278
Query 1313 CGGATATCACATCCCTAAAGGAAGTCAAGTCCTT-CTTAGCCGATATGGGCTGGGCCGTA 1371
|| || || |||||||||||||||||||| || |||||||| || || || || ||||
Sbjct 1279 AGGTTACCATATCCCTAAAGGAAGTCAAGTT-TTACTTAGCCGTTACGGTCTTGGTCGTA 1337
Query 1372 ACCCAAAAGTTTGGGCCGACCCACTTTGCTTTAAACCGGAGAGACATCTCAACGAATGCT 1431
|||| || |||||| | || |||||| |||| |||||||| || |||||||| || || |
Sbjct 1338 ACCCTAAGGTTTGGTCTGATCCACTTAGCTTCAAACCGGAAAGGCATCTCAATGAGTGTT 1397
Query 1432 CCGAAGTTACTTTGACCGAGAACGATCTCCGGTTTATCTCGTTCAGTACCGGGAAA-AGA 1490
| ||||| |||||||| ||||| |||||||| ||||||||||| ||||| |||||| |||
Sbjct 1398 CGGAAGTGACTTTGACGGAGAATGATCTCCGTTTTATCTCGTTTAGTAC-GGGAAAGAGA 1456
Query 1491 GGTTGTGCGGCTCCGGCGCTAGGAACGGCGTTGACCACGATGATGCTCGCGAGACTTCTT 1550
|| ||||| ||||||||| |||| |||||| | ||||| ||||||||||| || ||| ||
Sbjct 1457 GGATGTGCTGCTCCGGCGTTAGGTACGGCGATAACCACTATGATGCTCGCCAGGCTT-TT 1515
Query 1551 -CAAGG-TTTCACTTGGAAGCTA-CCTGAGAA-TGAGACACGTGTCGAGCTGATGGAGTC 1606
||||| ||| | | |||| ||| || | ||| |||||||||||||||||| ||||| ||
Sbjct 1516 GCAAGGGTTTAAGT-GGAAACTAGCC-G-GAAGTGAGACACGTGTCGAGCTTATGGAATC 1572
Query 1607 TAGTCACGATATGTTTCTGGCTAAACCGTTGGTTATGGTCGGTGACCTT-AGATTGCCGG 1665
||||| ||||||||||| | || || |||||||||||||| || || ||||| |||
Sbjct 1573 GAGTCATGATATGTTTCTTTCGAAGCCTTTGGTTATGGTCGGCGAA-TTGAGATTATCGG 1631
Query 1666 AGCATCTCTACCCGACGGTGAAGTGAG 1692
|| | || ||||| |||||||||||||
Sbjct 1632 AGGACCTTTACCCAACGGTGAAGTGAG 1658
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74656880200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5