BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39952.1
Length=2328
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490781 jgi|Araly1|490781|fgenesh2_kg.7__214__AT4G39952.1 1923 0.0
Ahg944025 jgi|Araly1|944025|scaffold_700254.1 152 1e-35
> Ahg490781 jgi|Araly1|490781|fgenesh2_kg.7__214__AT4G39952.1
Length=2229
Score = 1923 bits (1041), Expect = 0.0
Identities = 1166/1226 (95%), Gaps = 9/1226 (1%)
Strand=Plus/Plus
Query 7 CGTCGTCTCTTGAAACCC-AATCTTGTTGTTACTCTACG--CAAACTC-TCTTCTTCTTC 62
|||||||||||||||||| |||| ||||||||||||||| ||| | | |||||||||||
Sbjct 19 CGTCGTCTCTTGAAACCCAAATC-TGTTGTTACTCTACGAACAATCGCATCTTCTTCTTC 77
Query 63 CGCAAGCTACGTCGATCGTCATATTAGTGTGATTCTCTGCGATCAGAGCTTGAGCTTAGA 122
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 78 CTCAAGCTACGTCGATCGTCATATTAGTGTGATTCTCTGCGATCAGAGCTTGAGCTTAGA 137
Query 123 GTCTCTGCGCAAACACAACGCTCTTATCATCACCGGAGGACTCTCGGAAAACATCTTCGT 182
||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 138 GTCTCTGCGTAAACACAACGCTCTTATCATCACCGGAGGAAACTCGGAAAATATCTTCGT 197
Query 183 CGCATCGAAGCTAATTTCATCTTACGCTTCTTACGGGAAACCCAATTTGTCTTCCAGAGT 242
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 198 CGCATCGAAGCTAATTTCATCTTACGCTTCTTACGGGAAACCAAATTTGTCTTCCAGAGT 257
Query 243 CTTCCATTTGGTTACTCGAAGAGATATCTTTCTTTGGAATTCTATTATCAAAGCACATTT 302
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 258 CTTCGATTTGGTTACTCGAAGAGATGTCTTTCTTTGGAATTCTATTATCAAAGCACATTT 317
Query 303 CTCCAATGGGGATTATGCTCGATCCTTGTGTTTCTTCTTCTCAATGCTCTTGTCTGGCCA 362
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 CTCCAATGGCGATTATGCTCGATCCTTGTGTTTCTTCTTCTCAATGCTCTTGTCTGGCCA 377
Query 363 ATCCCCTGATCATTTCACTGCTCCCATGGTTGTTTCTGCTTGTGCGGAGCTTTTGTGGTT 422
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 378 ATCCCCTGATCATTTCACTGCTCCAATGGTTGTTTCTGCTTGTGCGGAGCTTTTGTGGTT 437
Query 423 TCATGTTGGGACTTTCGTTCACGGGCTTGTTTTGAAACATGGAGGTTTTGATA-GAAACA 481
| ||||||||| ||||||||| ||| |||| |||||||||||||||||||| | ||||||
Sbjct 438 TGATGTTGGGAGTTTCGTTCATGGGTTTGTGTTGAAACATGGAGGTTTTGA-ACGAAACA 496
Query 482 CTGCTGTGGGAGCTTCCTTTGTGTATTTCTACTCAAAGTGTGGGTTTTTACAAGATGCGT 541
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 497 CTGCAGTGGGAGCTTCCTTTGTTTATTTCTACTCAAAGTGTGGGTTTTTACAAGATGCGT 556
Query 542 GTCTTGTGTTCGACGAAATGCCTGACAGAGATGTTGTTGCTTGGACTGCCATTATATCTG 601
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 557 GTCTTGTGTTCGACGAAATGCCTGAGAGAGATGTTGTTGCTTGGACTGCCATTATATCTG 616
Query 602 GGCATGTGCAGAACGGCGAGAGCGAGGGAGGTTTGGGTTATCTTTGCAAGATGCATAGTG 661
|||||||||||||| | |||||| || ||||||||||||||||||||||||||||| ||
Sbjct 617 GGCATGTGCAGAACCGAGAGAGCAAGACAGGTTTGGGTTATCTTTGCAAGATGCATACTG 676
Query 662 CTGGTTCTGATGTTGATAAGCCGAATCCCAGAACATTGGAATGCGGATTCCAAGCTTGTT 721
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 677 TTGGTTCTGATGTTGATAAGCCGAATCCCAGAACATTGGAATGCGGATTCCAAGCTTGTT 736
Query 722 CTAATCTGGGAGCTTTGAAAGAAGGAAGATGTCTTCATGGATTTGCGGTGAAAAATGGTT 781
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 737 CAAATTTGGGAGCTTTGAAAGAAGGAAGATGTCTTCATGGATTTGCGGTGAAAAATGGTT 796
Query 782 TAGCTTCTTCCAA-GTTTGTCCAGTCTTCCATGTTTTCATTCTATTCGAAATCTGGGAAT 840
||||||||||||| ||| ||||||||||| || |||||||| ||||||||||||||||||
Sbjct 797 TAGCTTCTTCCAACGTT-GTCCAGTCTTCGATCTTTTCATTGTATTCGAAATCTGGGAAT 855
Query 841 CCATCCGAGGCTTATCTTTCTTTCCGTGAACTTGGGGATGAAGATATGTTTTCATGGACT 900
||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 856 CCAGCTGAGGCTTATCTTTCTTTCCGTGAACTTGGGGATCAAGATATGTTTTCATGGACT 915
Query 901 TCGATTATAGCGTCACTGGCGAGATCAGGTGACATGGAGGAAAGTTTTGATATGTTCTGG 960
||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||
Sbjct 916 TCGATTATAGCGTCACTGGTGAGATCAGGTAACGTGGAGGAAAGTTTTGATATGTTCTGG 975
Query 961 GAAATGCAGAACAAGGGAATGCACCCAGATGGGGTTGTCATTAGCTGTTTGATTAATGAA 1020
||||||||||||||||||||||| |||||||| |||||||||| |||||||||| ||||
Sbjct 976 GAAATGCAGAACAAGGGAATGCAGCCAGATGGAATTGTCATTAGTTGTTTGATTAGTGAA 1035
Query 1021 CTAGGTAAGATGATGCTTGTCCCTCAGGGTAAAGCCTTTCACGGGTTCGTCATAAGACAT 1080
|||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1036 CTAGGTAAGAAGATGCTTGTCCCTGAAGGTAAAGCCTTTCACGGGTTCGTCATAAGACAT 1095
Query 1081 TGTTTCTCTTTAGACAGTACAGTTTGCAATTCCTTGTTATCGATGTACTGCAAATTCGAG 1140
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1096 TGTTTCTCCTTAGACAGTACAGTTTGCAATTCGTTGTTATCGATGTACTGCAAATTCGAG 1155
Query 1141 CTTCTGTCTGTGGCTGAGAAGCTTTTCTGTAGGATAAGCGAAGAAGGAAACAAAGAAGCT 1200
|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1156 TTTCTGTCTGTGGCTGAGATGCTTTTCTGTAGGATAAGCGAAGAAGGAAACACAGAAGCT 1215
Query 1201 TGGAATACAATGCTTAAAGGCTATGG 1226
||||||||||||||||||||||||||
Sbjct 1216 TGGAATACAATGCTTAAAGGCTATGG 1241
Score = 1591 bits (861), Expect = 0.0
Identities = 947/990 (96%), Gaps = 0/990 (0%)
Strand=Plus/Plus
Query 1339 GGAGCGGTGCTACTAGGGAAGTCGTTGCATTGCTATGTTGTCAAAACTAGCCTGGATCTT 1398
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1240 GGAGCGGTGCTACTGGGGAAGTCGTTGCATTGCTATGTTGTCAAAACTAGCTTGGATCTT 1299
Query 1399 ACCATCTCAGTGGTCAATTCCCTCATTGATTTGTATGGAAAAATGGGAGACTTGACTGTA 1458
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1300 ACCATCTCAGTGGTCAATTCCCTCATTGATTTGTATGGAAAGATGGGAGACTTGACTGTT 1359
Query 1459 GCTTGGAGGATGTTTTGTGAAGCAGATACTAACGTTATCACTTGGAACGCAATGATTGCG 1518
|||||||||||||| |||||||||||||| ||| || |||| ||||||||||||||||||
Sbjct 1360 GCTTGGAGGATGTTCTGTGAAGCAGATACGAACATTGTCACGTGGAACGCAATGATTGCG 1419
Query 1519 TCTTATGTTCACTGTGAGCAATCCGAAAAAGCCATTGCATTGTTCGATAGAATGGTTTCT 1578
||||||||| | ||||||||| |||| ||||||||||| |||||||||||||||||||||
Sbjct 1420 TCTTATGTTTATTGTGAGCAACCCGACAAAGCCATTGCGTTGTTCGATAGAATGGTTTCT 1479
Query 1579 GAGAATTTCAAACCCAGCTCAATAACTTTGGTGACTCTGCTTATGGCTTGTGTCAATACT 1638
||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||
Sbjct 1480 CAGAATTTCAAACCCAGCTCAATAACGTTGGTGACTCTGCTTATGGCTTGCGCCAATACT 1539
Query 1639 GGCTCTCTGGAGAGAGGACAGATGATTCATCGGTACATCACTGAAACAGAGCACGAGATG 1698
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1540 GGCTCTCTGGAGAGAGGACAGATGATTCATCGGTACATCATTGAAACAGAGCACGAGATG 1599
Query 1699 AATCTTTCTCTTTCAGCTGCTCTCATTGACATGTACGCGAAATGTGGCCACCTTGAAAAG 1758
||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1600 AATCTTTCTCTTTCAACTGCTCTGATTGACATGTACGCAAAATGTGGCCACCTTGAAAAG 1659
Query 1759 TCACGAGAACTGTTTGATGCTGGAAATCAGAAGGATGCCGTTTGTTGGAATGTGATGATA 1818
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1660 TCACGAGAACTGTTTGATGCTGCAAGTCAGAAGGATGCCGTTTGTTGGAATGTGATGATC 1719
Query 1819 TCAGGTTATGGAATGCACGGAGATGTTGAATCGGCCATAGCACTTTTTGATCAAATGGAA 1878
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 1720 TCAGGTTATGGAATGCACGGACATGTTGAATCGGCCATTGCACTTTTTGATCAAATGGAA 1779
Query 1879 GAGTCTGATGTTAAACCAACCGGACCTACATTTCTTGCGCTTCTATCGGCTTGCACGCAC 1938
|||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 1780 GAGTCTGATGTTAAACCAACCGGACCTACATTTCTTGCCCTTCTATCAGCCTGCACGCAC 1839
Query 1939 GCTGGTTTAGTAGAACAAGGGAAAAAACTATTTCTCAAGATGCATCAGTACGATGTGAAA 1998
||||||||||| ||||| |||||||| || ||||||||||||||||||||||||||||||
Sbjct 1840 GCTGGTTTAGTTGAACACGGGAAAAACCTTTTTCTCAAGATGCATCAGTACGATGTGAAA 1899
Query 1999 CCCAACTTAAAGCATTACTCTTGTCTTGTGGATCTTCTTTCCAGGTCTGGTAATTTGGAG 2058
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1900 CCCAACTTAAAGCATTACTCTTGTCTTGTGGATCTTCTTTCCCGGTCTGGTAATTTGCAG 1959
Query 2059 GAAGCTGAAAGCACAGTCATGTCTATGCCATTCTCACCAGACGGGGTCATATGGGGAACA 2118
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1960 GAAGCTGAAACCACAGTCATGTCGATGCCATTCTCACCAGACGGGGTCATATGGGGAACA 2019
Query 2119 TTGTTGAGCTCATGCATGACCCATGGGGAGTTTGAGATGGGAATTCGAATGGCAGAACGT 2178
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2020 TTGTTGAGCTCATGCATGACCCATGGGGAGTTTGAGATGGGAATTCGAATGGCAGACCGT 2079
Query 2179 GCGGTTGCTAGTGATCCGCAGAACGATGGGTATTATATAATGCTTGCGAACATGTACAGT 2238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2080 GCGGTTGCTAGTGATCCGCAGAACGATGGGTATTATATAATGCTTGCGAACATGTACAGT 2139
Query 2239 GCTGCAGGTAAGTGGGAAGAAGCGGAAAGGGCACGAGAGATGATGAGGGAAAGCGGAGTT 2298
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2140 GCTGCAGGCAAGTGGGAACAAGCGGAAAGGGCACGAGAGATGATGAGGGAAAGCGGAGTT 2199
Query 2299 GGTAAGAGAGCTGGTCATAGTGTAGTCTAA 2328
|| ||||||||||| |||||||||||||||
Sbjct 2200 GGGAAGAGAGCTGGACATAGTGTAGTCTAA 2229
> Ahg944025 jgi|Araly1|944025|scaffold_700254.1
Length=406
Score = 152 bits (82), Expect = 1e-35
Identities = 99/106 (93%), Gaps = 5/106 (5%)
Strand=Plus/Plus
Query 7 CGTCGTCTCTTGAAACCC-AATCTTGTTGTTACTCTACG--CAAACTC-TCTTCTTCTTC 62
|||||||||||||||||| ||| |||||||||||||||| ||| ||| |||||||||||
Sbjct 39 CGTCGTCTCTTGAAACCCAAAT-TTGTTGTTACTCTACGAACAATCTCATCTTCTTCTTC 97
Query 63 CGCAAGCTACGTCGATCGTCATATTAGTGTGATTCTCTGCGATCAG 108
| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 98 CTCAAGCTACGTCGATCGTCATATTAGTGTGATTCTCTGCGATCAG 143
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87683743990
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5