BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39955.1
Length=1188
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944000 jgi|Araly1|944000|scaffold_700229.1 1633 0.0
> Ahg944000 jgi|Araly1|944000|scaffold_700229.1
Length=1023
Score = 1633 bits (884), Expect = 0.0
Identities = 979/1024 (96%), Gaps = 9/1024 (1%)
Strand=Plus/Plus
Query 10 ATCAGAAGAGGAAGAGAATCAATGGCGAGTTGCTTCAGCTACGTGTCTTCTCGTAACAAA 69
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATCAGAAGAGGAAGAG-ATCAATGGCGAGTTGCTTCAGCTACGTGTCTTCTCGTAACAAA 59
Query 70 TGTTACCAATACAGCTTCTCTCGTGCTGGTCTCCGATCATCTACCTCCGATCTTGGCGAC 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TGTTACCAATACAGCTTCTCTCGTGCTGGTCTCCGATCATCTACCTCCGATCTTGGCGAC 119
Query 130 GGCACCGTCTTCCACTGTTGGATCCCACTTACTCACATCCACACCAAGCCCACGCTCCTC 189
||||||||| |||||||||||||||||| | ||||||| ||||||||||||||||||||
Sbjct 120 GGCACCGTCGTCCACTGTTGGATCCCACAGAGTCACATCGACACCAAGCCCACGCTCCTC 179
Query 190 CTCCTTCACGGGATCGGAGCTAACGCTATGTGGCAGTGGGACCGCTTCATCGACCGTTTT 249
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 180 CTCCTTCACGGGATCGGAGCTAACGCTATGTGGCAGTGGGACCGGTTCATCGACCGGTTT 239
Query 250 ATCCCCCGCTTCAACGTCTACGTACCGGACCTCATCTTCTTTGGCGACTCCTACACCACT 309
|| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 240 ATTCCCCGGTTCAACGTCTACGTACCGGACCTCATCTTCTTTGGCGACTCGTACACCACT 299
Query 310 CGTCCCGACCGCTCAGAGTCTTTCCAGGCGACTTGTGTCATGAAGGCGATGGATGCTTAC 369
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 300 CGTCCCGACCGGTCAGAGTCTTTCCAGGCGAGTTGTGTCATGAAGGCGATGGATGGTTAC 359
Query 370 GGTGTTAGGACCATGACCGTCGCTGGCCTCAGCTACGGTGGTTTTGTGGCCTACTCCTTG 429
|||||||||||||||||||| ||||| ||||||||||| || || ||||||||||| |||
Sbjct 360 GGTGTTAGGACCATGACCGTGGCTGGTCTCAGCTACGGCGGGTTCGTGGCCTACTCGTTG 419
Query 430 GCGGCGCAGTTTAAGGAGAGGGTAGATCGAGTTGTGCTAATATGCGCCGGTGTTGCTCTG 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GCGGCGCAGTTTAAGGAGAGGGTAGATCGAGTTGTGCTAATATGCGCCGGTGTTGCTCTG 479
Query 490 GAGGAGAAAGACTCGGAGGATGGTATGTTCAAAGTGAAGAGCCCGGAGGAAGCGGCGGCT 549
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 480 GAGGAGAAAGACTCGGAGGATGGGATGTTTAAAGTGAAGAGCCCGGAGGAAGCGGCGGCT 539
Query 550 GTTTTGTTTCCTCAGTCTCCTTCGATGCTCCGGCGGCTTCTCCAGTTATCTTTCTATAAA 609
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 540 GTTTTGTTTCCTCAGTCTCCTTCGATGCTCCGGCGGCTTCTCCAGTTATCTTTCTACAAA 599
Query 610 CCGCCGATTTGGATCCCTTCTTGCTTTGCCATGGACTACATTCATGTAATGTGTAAAGAC 669
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 600 CCGCCGATTTGGATCCCTTCTTGCTTTGCCATGGACTACATTCATGTGATGTGTAAAGAT 659
Query 670 TATCTTCAAGAAAGGAAAGAACTTGTGGAAGCTCTGCATAAGGGTAGAAGATTCGCCAAT 729
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 660 TATCTTCAAGAAAGGAAAGAACTTGTGGAAGCTCTGCATAAGGGTAGAAGATTCTCAAAT 719
Query 730 CTTCCAAAGATAACACAGCCGACATTGATGATATGGGGAGAGGAAGATCAAGTATTTCCA 789
||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 720 CTTCCAAAGATAACACAGCCGGCATTGATGATATGGGGAGAGGAAGATCAAGTTTTTCCG 779
Query 790 GTTGAATTAGCTCATAGATTGAAAAGATATTTAGGGGAAGACAGAGCACAATTGGTGTTA 849
|| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 780 GTGGAACTAGCTCATAGATTGAAAAGATATTTAGGGGAAAACAGAGCACAATTGGTGTTA 839
Query 850 CTGAAGAAGACAGGACATGCGATTAATGAAGAGAAACCAAAAGAGATGTACAAACACATG 909
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 840 CTAAAGAAGACAGGACATGCGGTTAATGAAGAGAAACCAAAAGAGATGTACAAACACATG 899
Query 910 AAATCTTTTCTTTGCACTGACGCAATGATTCCTC-AGAATCACCAGATCAATGCTAAGAG 968
|||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||
Sbjct 900 AAATCTTTTCTTTGCACTGACGCAATGATTCCTCCA-AATCA---GATCAATGCTAAGAG 955
Query 969 ACTCATGTTAGCAAACTTGATATCCCCAGATCAGCAGATCAACAAGTGATGTTACTGCAG 1028
|||||||||||||||||||||||||| | |||||||||||| ||||||||||||||| |
Sbjct 956 ACTCATGTTAGCAAACTTGATATCCC-A--TCAGCAGATCAATAAGTGATGTTACTGCGG 1012
Query 1029 aaaa 1032
||||
Sbjct 1013 AAAA 1016
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44336952471
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5