BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39960.1
Length=1716
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490783 jgi|Araly1|490783|fgenesh2_kg.7__216__AT4G39960.1 2771 0.0
Ahg481099 jgi|Araly1|481099|fgenesh2_kg.4__159__AT2G22360.1 1240 0.0
> Ahg490783 jgi|Araly1|490783|fgenesh2_kg.7__216__AT4G39960.1
Length=1668
Score = 2771 bits (1500), Expect = 0.0
Identities = 1615/1671 (97%), Gaps = 5/1671 (0%)
Strand=Plus/Plus
Query 1 TCATTTGAGTCTACTCGTTTTTTCTTATCTATCGCAAAACTCTCCCGTCGTCACCATTCG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCATTTGAGTCTACTCGTTTTTTCTTATCTATCGCAAAACTCTCCCGTCGTCACCATTCG 60
Query 61 ATTACGGGAGTGTAATGGCTCTTATACAATTTGGAAGTTCATGTGTTGCTCAATGGGGGA 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 61 ATTACGGGAGTGTAATGGCTCTTATACAATTCGGAAGTTCATGTGTTGCTCAATGGGGGA 120
Query 121 TTCTTCGTCCTCGGTTTGCTGTTAAAGCTTTTTATCCAAGCAGATTGGAGTCTCACCAAG 180
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTCTTCGTCCTCACTTTGCTGTTAAAGCTTTTTATCCAAGCAGATTGGAGTCTCACCAAG 180
Query 181 ACAATTGCATCAGCCAAATAAATTGTCTGGGAGCTTCAAGGTCGAGTATGTTTGCACAGG 240
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 ACAATTGCATCAGCCAGATAAATTGTTTGGGAGCTTCAAGGTCGAGTATGTTTGCACAGG 240
Query 241 GCTCTTTACCCTTCTTGTCATTGACGGGAGTATCTCCTAATACACATTCTCGTAGAGGAG 300
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 241 GCTCTTTACCCTTCTTGTCATTGACGGGAGTATCTCGTAATACACATTCTCGTAGAGGAG 300
Query 301 CTCGCTTCACTGTTAGAGCTGATACTGATTTCTATTCTGTCCTTGGAGTCTCGAAAAATG 360
||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||
Sbjct 301 CTCGCTTCACTGTTAGAGCCGATGCTGATTTCTATTCTGTCCTTGGAGTCTCTAAAAATG 360
Query 361 CAACCAAAGCTGAGATTAAAAGCGCTTATCGGAAGCTCGCTAGGAGTTATCATCCAGATG 420
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||| || |
Sbjct 361 CAACCAAAGCTGAGATTAAAAGTGCTTATCGGAAGCTCGCTAGGAGTTACCATCCGGACG 420
Query 421 TGAACAAGGATGCTGGGGCAGAAGATAAATTTAAAGAAATAAGTAATGCATATGAGATCT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TGAACAAGGATGCTGGGGCAGAAGATAAATTTAAAGAAATAAGTAATGCATATGAGATCT 480
Query 481 TATCAGATGATGAGAAAAGATCTCTATACGACAGATATGGCGAGGCAGGAGTTAAAGGCG 540
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 481 TATCAGATGATGAGAAAAGATCTCTGTACGACAGATATGGCGAGGCAGGAGTTAAAGGCG 540
Query 541 CTGGAATGGGAGGCATGGGGGATTATAGTAATCCGTTTGATCTATTTGAGTCATTATTCG 600
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 541 CTGGAATGGGAGGCATGGGGGATTATAGTAATCCATTTGATCTATTTGAGTCATTATTCG 600
Query 601 AAGGAATGGGTGGGATGGGAGGAATGGGCGGTGGAATGGGTAGTAGAGGTTCAAGGAGCA 660
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 601 AAGGAATGGGTGGGATGGGAGGAATGGGAGGTGGAATGGGTAGTAGAGGTTCAAGGAGCA 660
Query 661 GAGCTATCGATGGTGAAGATGAGTATTACTCACTAATCTTGAATTTCAAAGAAGCGGTTT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GAGCTATCGATGGTGAAGATGAGTATTACTCACTAATCTTGAATTTCAAAGAAGCGGTTT 720
Query 721 TCGGTATTGAGAAAGAAATTGAGATATCTCGGTTAGAGAGCTGTGGGACTTGCAATGGTT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TCGGTATTGAGAAAGAAATTGAGATATCTCGGTTAGAGAGCTGTGGGACTTGCAATGGTT 780
Query 781 CTGGAGCTAAAG-CGGGAACCAAACCAACCAAATGCAAAACATGTGGCGGGCAAGGACAG 839
||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 781 CTGGAGC-AAAGGCGGGAACCAAACCAACCAAATGCAAAACGTGTGGCGGGCAAGGACAG 839
Query 840 GTGGTAGCATCAACGAGGACACCACTCGGTGTATTCCAACAAGTGATGACTTGCTCTCCG 899
||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 840 GTGGTGGCATCGACGAGGACACCACTCGGTGTATTCCAACAAGTCATGACTTGCTCTCCA 899
Query 900 TGTAACGGAACTGGGGAGATATCAAAACCGTGTGGTGCATGCTCAGGAGATGGACGTGTG 959
|| ||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 900 TGCAACGGAACTGGAGAGATATCAAAACCATGTGGTGCATGTTCAGGAGATGGACGTGTG 959
Query 960 AGAAGGACAAAGCGGATTAGTCTTAAAGTTCCTGCGGGTGTGGATTCTGGAAGTAGGTTA 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 AGAAGGACAAAGCGGATTAGTCTTAAAGTTCCTGCGGGTGTGGATTCTGGAAGTAGGTTA 1019
Query 1020 AGAGTGAGGGGAGAAGGGAATGCAGGAAAGAGAGGTGGATCACCGGGAGATCTCTTTGCG 1079
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 AGAGTAAGGGGAGAAGGAAATGCAGGAAAGAGAGGTGGATCACCGGGAGATCTCTTTGCG 1079
Query 1080 GTTATTGAGGTTATTCCAGATCCGGTTTTGAAGCGTGATGATACAAATATACTTTATACG 1139
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 1080 GTTATTGAGGTTATTCCGGATCCGATTTTGAAGCGTGATGATACAAATATACTTTATACG 1139
Query 1140 TGTAAGATATCGTATGTAGATGCCATATTGGGGACGACTTTGAAGGTACCAACAGTGGAT 1199
||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||
Sbjct 1140 TGTAAGATATCGTATGTAGATGCCATATTAGGGACGACTCTGAAGGTTCCAACAGTGGAT 1199
Query 1200 GGAGAGGTGGATTTGAAAGTACCGGCAGGGACACAACCAAGCACGACATTGGTGATGGCT 1259
||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||
Sbjct 1200 GGAGAGGTGGATTTGAAAGTACCAGCAGGGACACAACCGAGCACGACATTGGTAATGGCG 1259
Query 1260 AAAAAAGGAGTTCCGGTTTTGAATAAGAGCAAGATGAGAGGTGATCAGTTAGTGAGAGTG 1319
| ||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||
Sbjct 1260 AGAAAAGGAGTTCCGGTTTTGAATAAGAGTAAGATGAGAGGTGACCAATTAGTGAGAGTG 1319
Query 1320 CAAGTTGAGATTCCTAAGAGATTGAGTAAAGAAGAGAAGATGCTTGTTGAGGAGCTGGCT 1379
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 1320 CAAGTTGAGATTCCTAAGAGATTGAGTAAAGAAGAGAAGAAGCTTGTTGAGGAGCTTGCT 1379
Query 1380 GATATGAGCAAGAACAAGGTAGCTAATAGCAGGAGATAAACCAACACACAATATTAGTGA 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 GATATGAGCAAGAACAAGGTAGCTAATAGCAGGAGATAAACCAACACACAATATTAGTGA 1439
Query 1440 AATGTGATGTTATATAGATTCATCATTCTCTGCTTGTCGTCTTTCTAATGGTTCGTCTAA 1499
||| || ||||||||||||||||||||||||||||||| |||||||||||| || |||||
Sbjct 1440 AATTTGGTGTTATATAGATTCATCATTCTCTGCTTGTCTTCTTTCTAATGGGTCTTCTAA 1499
Query 1500 CGATGGAGAAGATAAGCAAGAGGCAA-AAGAAAGACTTATTAGGTGAGAGGAAAATTTGA 1558
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1500 TGATGGAGAAGATAAGCAAGAGG-AAGAAGAAAGACTTATTAGGTGAGAGGAAAATTTGA 1558
Query 1559 AGAACTCTGGTTTTGGGTTTTCCTCTTCAATTTTTGTGTTTTACTTTTAAAACAAATTTT 1618
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1559 AGAACTCTATTTTTGGGTTTTCCTCTTCAATTTTTGTGTTTTACTTTTAAAACAATTTTT 1618
Query 1619 ATGGATTTATCAGGATTCAGGGTAGGTCTTGATTGTATTGTACTGCTATTT 1669
||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1619 ATGGATTTATC-GGATTCAGGGTAGGTCTTGATTGTATTGTACTGCTATTT 1668
> Ahg481099 jgi|Araly1|481099|fgenesh2_kg.4__159__AT2G22360.1
Length=1591
Score = 1240 bits (671), Expect = 0.0
Identities = 1133/1354 (84%), Gaps = 40/1354 (3%)
Strand=Plus/Plus
Query 74 AATGGCTCTTATACAATTTGGAAGTTCATGTGTTGCTCAATGGGGGATTCTTCGTCCTCG 133
||||||||| ||||||||||||||| ||||||||||||||| ||| | |||||||||
Sbjct 117 AATGGCTCTAATACAATTTGGAAGTACATGTGTTGCTCAAT---GGAGTATTCGTCCTCA 173
Query 134 GTTTGCTGTTAAAGCTTTTTATCCAAGCAGATTGGAGTC---TCACCAAGACAATTGCAT 190
|||||||| | ||||| |||||| |||||| | || || || |||| | ||| |||
Sbjct 174 ATTTGCTGTGAGAGCTTATTATCCCAGCAGACTCGAATCAAGTCGCCAACAAAATCCCAT 233
Query 191 CAGCCAAATAAATTGTCTGGGAGCTTCAAGGTCGAGTATGTT-TGCACA-GGGCTCTTTA 248
||||||||||||||| ||||||||||||||||||||||||| | |||| ||| || ||
Sbjct 234 GAGCCAAATAAATTGTTTGGGAGCTTCAAGGTCGAGTATGTTCT-CACATGGG-TCCTTG 291
Query 249 CCCTTCTTGT-CATTGACGGGAGTATCTCCTAATACACATTCTCGTAGAGGAGCTCGCTT 307
|||||||||| || |||||||| | ||| |||| ||| |||| |||||| |||||||
Sbjct 292 CCCTTCTTGTCCA-TGACGGGAATGTCTAGAAATATGCATCCTCGCAGAGGATCTCGCTT 350
Query 308 CACTGTTAGAGCTGATACTGATTTCTATTCTGTCCTTGGAGTCTCGAAAAATGCAACCAA 367
|||||||||||||||| | |||| |||||| || || ||||| |||||||||||||||||
Sbjct 351 CACTGTTAGAGCTGATGCAGATTACTATTCGGTACTCGGAGTTTCGAAAAATGCAACCAA 410
Query 368 AGCTGAGATTAAAAGCGCTTATCGGAAGCTCGCTAGGAGTTATCATCCAGATGTGAACAA 427
| |||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||
Sbjct 411 ATCTGAGATTAAAAGCGCTTATCGGAAGCTGGCTAGGAATTACCATCCAGATGTGAACAA 470
Query 428 GGATGCTGGGGCAGAAGATAAATTTAAAGAAATAAGTAATGCATATGAGATCTTATCAGA 487
|||| |||| |||||||| ||||| |||||||||||||||||||| ||| | ||||||||
Sbjct 471 GGATCCTGGTGCAGAAGAGAAATTCAAAGAAATAAGTAATGCATACGAGGTTTTATCAGA 530
Query 488 TGATGAGAA-AAGATCTCTATACGACAGATATGGCGAGGCAGGAGTTAAAGGCGCTG--G 544
|||||| || || |||||| ||||| || ||||| ||||| ||| | |||||||||| |
Sbjct 531 TGATGAAAAGAA-ATCTCTTTACGATAGGTATGGTGAGGCCGGACTAAAAGGCGCTGCTG 589
Query 545 -AATGGGAGGCATGGGGGATTATAGTAATCCGTTTGATCTATTTGAGTCATTATTCGAAG 603
|||||| ||||||||||||| |||||||||||| |||||||| ||||||||||||||||
Sbjct 590 GAATGGGTGGCATGGGGGATTTTAGTAATCCGTTCGATCTATTCGAGTCATTATTCGAAG 649
Query 604 GAATGGGTGGGATGGGAGGAATGGGCGGTGGAATGGGTAGTAGAGGTTCAAGGAGCAGAG 663
| |||||||||||||||||| || ||||| |||||| || | |||||| |||||||
Sbjct 650 GCATGGGTGGGATGGGAGGA--GG----TGGAACGGGTAG-AG-G-TTCAAGAAGCAGAG 700
Query 664 CTATCGATGGTGAAGATGAGTATTACTCACTAATCTTGAATTTCAAAGAAGCGGTTTTCG 723
| | |||||| |||| ||||||||| |||||||||| || |||||||||||||||||||
Sbjct 701 CCGTGGATGGTCAAGACGAGTATTACACACTAATCTTAAACTTCAAAGAAGCGGTTTTCG 760
Query 724 GTATTGAGAAAGAAATTGAGATATCTCGGTTAGAGAGCTGTGGGACTTGC-AATGGTTCT 782
| || || |||||||| |||||||| ||| | |||||||| |||||||| || |||||
Sbjct 761 GGATGGAAAAAGAAATAGAGATATCACGGCTCGAGAGCTGCGGGACTTGTGAA-GGTTCA 819
Query 783 GGAGCTAAAGCGGGAACCAAACCAACCAAATGCAAAACATGTGGCGGGCAAGGACAGGTG 842
|| || ||| ||||||||||||| |||||||||| || |||||||| ||||| || |||
Sbjct 820 GGTGCAAAACCGGGAACCAAACCGACCAAATGCACCACGTGTGGCGGACAAGGTCAAGTG 879
Query 843 GTAGCATCAACGAGGACACCACTCGGTGTATTCCAACAAGTGATGACTTGCTC-TCCGTG 901
|| ||||| | || || || ||||| || ||||||||||| ||||||||||| ||| ||
Sbjct 880 GTTTCATCAGCAAGAACTCCTCTCGGCGTGTTCCAACAAGTCATGACTTGCTCATCC-TG 938
Query 902 TAACGGAACTGGGGAGATATCAAAACCGTGTGGTGCATGCTCAGGAGATGGACGTGTGAG 961
|||||| ||||| ||||| || | ||||||||| | || |||||||| ||||| |||||
Sbjct 939 TAACGGCACTGGAGAGATCTCGACGCCGTGTGGTACTTGTTCAGGAGACGGACGCGTGAG 998
Query 962 -AAGGACAAAGCGGATTAGTCTTAAAGTTCCTGC-GGGTGTGGATTCTGGAAGTAGGTTA 1019
||| ||||| ||||| ||||| ||||| || || ||| || ||||| || || |||||
Sbjct 999 GAAG-ACAAAACGGATAAGTCTCAAAGTACCAGCTGGG-GTTGATTCAGGTAGCCGGTTA 1056
Query 1020 AGAGTGAGGGGAGAAGGGAATGCAGGAAAGAGAGGTGGATCACCGGGAGATCTCTTTGCG 1079
||||| || |||||||| |||||||| |||||||| |||||||| || ||||| ||||
Sbjct 1057 AGAGTAAGAGGAGAAGGCAATGCAGGGAAGAGAGGCGGATCACCAGGCGATCTGTTTGTT 1116
Query 1080 GTTATTGAGGTTATTCCAGATCCGGTTTTGAAGCGTGATGATACAAATATACTTTATACG 1139
||||| || ||||| ||||| ||||||||||| || || ||||||||||| || || ||
Sbjct 1117 GTTATAGAAGTTATACCAGACCCGGTTTTGAAACGGGACGATACAAATATTCTCTACACT 1176
Query 1140 TGTAAGATATCGTATGTAGATGCCATATTGGGGACGACTTTGAAGGTACCAACAGTGGAT 1199
|| |||||||||||| | ||||| || || ||||| || ||||| || ||||||||||||
Sbjct 1177 TGCAAGATATCGTATATTGATGCGATTTTAGGGACAACATTGAAAGTGCCAACAGTGGAT 1236
Query 1200 GG-AGAGGTGGATTTGAAAGTACCGGCAGGGACACAACCAAGCACGACA-TTGGTGATGG 1257
|| | || | ||||||||||| || |||||||||||||| ||||||| ||| ||||||
Sbjct 1237 GGGACAG-TAGATTTGAAAGTGCCAGCAGGGACACAACCTGGCACGACGCTTG-TGATGG 1294
Query 1258 CTAAAAAAGGAGTTCCGGTTTTGAATAAGAGCAAGATGAGAGGTGATCAGTTAGTGAGAG 1317
| ||||| ||||||||||| ||||| ||||| || |||||||| |||||||| |||||||
Sbjct 1295 CGAAAAAGGGAGTTCCGGTATTGAACAAGAGTAATATGAGAGGGGATCAGTTGGTGAGAG 1354
Query 1318 TGCAAGTTGAGATTCCTAAGAGATTGAGTAAAGAAGAGAAGATGCTTGTTGAGGAGCTGG 1377
| ||||| ||||| |||||||||||||| ||||| ||||||| ||| |||| ||||| |
Sbjct 1355 TACAAGTGGAGATACCTAAGAGATTGAGCAAAGAGGAGAAGAAACTTATTGAAGAGCTTG 1414
Query 1378 CTGATATGAGCAAGAACAAGG-TAGCTAATAGCA 1410
|||||||||||||||||||| | ||||||||||
Sbjct 1415 CTGATATGAGCAAGAACAAGACT-GCTAATAGCA 1447
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64372514050
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5