BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39980.1
Length=1918
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944003 jgi|Araly1|944003|scaffold_700232.1 2529 0.0
Ahg491335 jgi|Araly1|491335|fgenesh2_kg.7__768__AT4G33510.1 795 0.0
> Ahg944003 jgi|Araly1|944003|scaffold_700232.1
Length=1628
Score = 2529 bits (1369), Expect = 0.0
Identities = 1535/1615 (95%), Gaps = 11/1615 (1%)
Strand=Plus/Plus
Query 66 AGAGAAAATCTGTGATGGCTCTTTCCAACGCCTCCTCTCTCTCCACCAGATCTATCTA-- 123
||||||||||| | ||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 8 AGAGAAAATCTCTCATGGCTCTTTCAAACGCCTCCTCTCTCTCCGCCAGATCTATCTACG 67
Query 124 -CGGCGGTGA---TC---TTTCTCACCGTCCA-AGCAACCGTCAATCATCCTTCACATTT 175
|||||| || || ||||||||||| || |||||||||||||||||||||||||||
Sbjct 68 GCGGCGGCGACGCTCGTATTTCTCACCGT-CAGAGCAACCGTCAATCATCCTTCACATTT 126
Query 176 CATCCCGCCGTCAACACCAAGCCTAAATCCGTTAACCTCGTCACGGCTGTACACGCGGCT 235
|||||||||||||||||||||| ||| |||||||||||||| ||||| ||||||||||||
Sbjct 127 CATCCCGCCGTCAACACCAAGCTTAAGTCCGTTAACCTCGTTACGGCGGTACACGCGGCT 186
Query 236 GAGCCAGCTAGAAACGCTGTTTCAGTCAAAGAATCCGTTGCGTCTTCTTCGTCTGGTGCA 295
||||||||||||||||||||||| || || |||||||||||| | || ||||||||||||
Sbjct 187 GAGCCAGCTAGAAACGCTGTTTCTGTTAAGGAATCCGTTGCGCCGTCGTCGTCTGGTGCA 246
Query 296 TTGAAATGGACTCCAGAGAGCTGGAAACTGAAGAAGGCTCTGCAACTTCCTGATTATCCT 355
||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||
Sbjct 247 TTGAAATGGACTCCAGAGAGCTGGAAATTGAAGAAAGCTCTGCAACTTCCTGATTACCCT 306
Query 356 AACGCCAATGAGCTTGAGTCTGTGCTTAAAACGATAGAGGCTTTTCCTCCGATTGTGTTC 415
||||| ||||||||||||||||||||||| ||||| |||||||| ||||||||||| |||
Sbjct 307 AACGCTAATGAGCTTGAGTCTGTGCTTAAGACGATTGAGGCTTTCCCTCCGATTGTCTTC 366
Query 416 GCCGGAGAAGCTAGGAATCTTGAAGAGAGATTGGCTGATGCTGCTGTTGGTAAAGCTTTT 475
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 GCCGGAGAAGCTAGAAATCTTGAAGAGAGATTGGCTGATGCTGCTGTTGGTAAAGCTTTT 426
Query 476 CTTCTCCAAGGAGGTGATTGTGCTGAGAGTTTCAAGGAGTTCAATGCTACTAATATCAGA 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 CTTCTCCAAGGAGGTGATTGTGCTGAGAGTTTCAAGGAGTTCAATGCTACTAATATCAGA 486
Query 536 GACACCTTCAGGGTTCTGCTTCAGATGAGTATTGTTCTTACATTCGGTGGCCAGGTTCCG 595
|| ||||| |||||| ||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 487 GATACCTTTAGGGTTTTGCTTCAGATGAGTATTGTTCTTACATTCGGCGGCCAAGTTCCG 546
Query 596 GTCATTAAGGTTGGGAGGATGGCTGGTCAATTTGCAAAGCCTAGATCTGATGCATTTGAG 655
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 547 GTCATTAAGGTTGGGAGGATGGCTGGTCAATTTGCCAAGCCTAGATCTGATCCATTTGAG 606
Query 656 GAGAAGGATGGAGTGAAATTACCAAGCTACAAGGGAGATAACATCAATGGTGATACTTTT 715
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 607 GAGAAGGATGGAGTGAAATTACCTAGCTACAAGGGAGATAACATCAATGGTGACACTTTT 666
Query 716 GATGAGAAATCCAGGATTCCTGATCCTAATAGGATGATTCGAGCTTACACTCAATCTGCA 775
||||||||||| || |||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 667 GATGAGAAATCTAGAATTCCTGATCCTAATAGGATGATTCGTGCTTACACACAATCTGCT 726
Query 776 GCTACTTTGAATCTTCTTAGAGCCTTTGCCACTGGAGGTTACGCTGCTATTCAAAGAGTT 835
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 727 GCTACTTTGAATCTTCTTAGAGCCTTTGCCACTGGAGGTTATGCTGCTATTCAAAGAGTT 786
Query 836 ACTCAATGGAACCTTGATTTTGTTGAACAAAGTGAGCAAGCTGACAGGTACCAGGAATTA 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 ACTCAATGGAACCTTGATTTTGTTGAACAAAGTGAGCAAGCTGACAGGTACCAGGAATTA 846
Query 896 GCTAATAGGGTTGATGAGGCCTTGGGGTTCATGTCTGCATGTGGACTTGGCACGGATCAT 955
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 847 GCTAACAGGGTTGATGAGGCCTTGGGGTTTATGTCTGCATGTGGACTTGGCACGGATCAT 906
Query 956 CCACTTATGACTACAACTGATTTCTACACATCCCATGAGTGTTTGCTTCTGCCTTATGAA 1015
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 907 CCACTCATGACTACAACTGATTTCTACACATCACATGAGTGTTTGCTTCTGCCTTATGAA 966
Query 1016 CAGTCCCTTACAAGGTTGGATTCAACTTCTGGTCTCTACTATGATTGTTCTGCACACATG 1075
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 967 CAGTCGCTTACAAGGTTGGATTCAACTTCTGGTCTGTACTATGATTGTTCTGCACACATG 1026
Query 1076 GTCTGGTGCGGAGAGCGTACCAGACAATTGGATGGCGCTCATGTCGAGTTTCTCAGGGGG 1135
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1027 GTGTGGTGCGGAGAGCGTACCAGACAATTGGATGGTGCTCATGTCGAGTTTCTCAGGGGG 1086
Query 1136 ATTGCTAATCCTCTGGGCATTAAGGTGAGCAACAAAATGGATCCCTTTGAGCTGGTTAAG 1195
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||
Sbjct 1087 ATTGCTAATCCTCTGGGCATTAAGGTGAGCAATAAAATGGATCCCAATGAGCTGGTCAAG 1146
Query 1196 CTAGTAGAAATCCTGAATCCTAATAACAAGCCTGGAAGAATCACTGTAATTGTGAGAATG 1255
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1147 CTAGTAGAAATCCTGAATCCTAACAACAAGCCTGGAAGAATCACTGTAATTGTGAGAATG 1206
Query 1256 GGTGCCGAGAACATGAGAGTTAAGCTTCCCCACCTGATCAGAGCAGTCCGCAGATCAGGC 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1207 GGTGCCGAGAACATGAGAGTTAAGCTTCCCCACCTGATCAGAGCAGTCCGCAGATCAGGC 1266
Query 1316 CAGATTGTGACATGGGTCTGCGATCCAATGCATGGAAACACCATCAAAGCACCTTGCGGT 1375
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1267 CAGATTGTGACATGGGTCTGTGATCCAATGCATGGAAACACTATCAAAGCACCTTGCGGT 1326
Query 1376 CTTAAAACACGTGCCTTTGACTCAATACTGGCTGAAGTCCGAGCATTCCTTGATGTGCAC 1435
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1327 CTGAAAACACGTGCCTTTGACTCAATCCTGGCTGAAGTCCGAGCATTCCTTGATGTGCAC 1386
Query 1436 GAGCAAGAAGGAAGCCACGCGGGCGGTATCCATCTCGAGATGACAGGTCAGAACGTGACA 1495
|| |||||||||||||| || || ||||||||||| ||||||||||| ||||||||||||
Sbjct 1387 GAACAAGAAGGAAGCCATGCTGGTGGTATCCATCTTGAGATGACAGGACAGAACGTGACA 1446
Query 1496 GAATGCATTGGAGGGTCCCGCACTGTGACCTACGATGACCTCAGTTCTCGCTACCACACA 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1447 GAATGCATTGGAGGGTCCCGCACTGTGACCTACGATGACCTCAGTTCTCGCTACCACACA 1506
Query 1556 CACTGTGACCCAAGGCTGAACGCGTCACAGTCTCTTGAACTTGCCTTCATTGTTGCAGAA 1615
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1507 CACTGTGACCCAAGGCTGAACGCGTCACAGTCTCTTGAACTGGCTTTCATTGTTGCAGAA 1566
Query 1616 CGGCTCAGGAAGAGAAGAACGGGTAGCCAGCGTGTGTCTTGAGTCCGGTTCTTCC 1670
|||||||||||||||||||| ||||||||||| ||||||||||| |||| ||||
Sbjct 1567 CGGCTCAGGAAGAGAAGAACTGGTAGCCAGCGAGTGTCTTGAGTGTGGTTTTTCC 1621
> Ahg491335 jgi|Araly1|491335|fgenesh2_kg.7__768__AT4G33510.1
Length=1727
Score = 795 bits (430), Expect = 0.0
Identities = 995/1264 (79%), Gaps = 54/1264 (4%)
Strand=Plus/Plus
Query 396 CTTTTCCTCCGATTGTGTTCGCCGGAGAAGCTAGGAATCTTGAAGA-GAGATTGGCTGAT 454
|||| ||||| || || ||||| || || || ||||| || || || || |||| | |
Sbjct 278 CTTTCCCTCCTATAGTTTTCGCTGGTGAGGCGAGGAAACTAGAGGATAAGCTTGG-TCAA 336
Query 455 GCTGCTGTTGGTAAAGCTTTTCTTCTCCAAGGAGGTGATTGTGCTGAGAGTTTCAAGGAG 514
|| || | ||| | || ||| | || ||||| ||||||||||||||||||||||||||
Sbjct 337 GCGGCCATGGGTCAGGCCTTTATGCTTCAAGGTGGTGATTGTGCTGAGAGTTTCAAGGAA 396
Query 515 TTCAATGCTACTAATATCAGAGACACCTTCAGGGTTCTGCTTCAGATGAGTATTGTTCTT 574
|| || |||| ||| || ||||| |||||||||||||| ||||||||| || |||||||
Sbjct 397 TTTAACGCTAATAACATTAGAGATACCTTCAGGGTTCTTCTTCAGATGGGTGTTGTTCTC 456
Query 575 ACATTCGGTGGCCAGGTT-CCGGTCATTAAGGTTGGG-AGGATGGCTGGTCAATTTGCAA 632
| ||||||||||| ||| || || || |||| |||| || ||||||||||| ||||| |
Sbjct 457 ATGTTCGGTGGCCA-GTTACCAGTTATCAAGG-TGGGAAGAATGGCTGGTCAGTTTGCCA 514
Query 633 AGCCTAGATCTGATGCATTTGAGGAGAAGGATGGAGTGAAATTACCAAGCTACAAG-GGA 691
|||| ||||| || ||||||||||||| ||||| ||||| | || || ||| || |||
Sbjct 515 AGCCGAGATCGGACCCATTTGAGGAGAAAGATGGTGTGAAGCTGCCGAGTTAC-AGAGGA 573
Query 692 GATAACATCAATGGTGATACTTTTGATGAGAAATCCAGGATTCCTGATCCTAATAGGATG 751
|||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 574 GATAACATAAATGGTGATGCTTTTGATGAGAAATCCAGGATTCCTGATCCTCATAGGATG 633
Query 752 ATTCGAGCTTACACTCAATCTGCAGCTACTTTGAATCTTCTT-AGAGCCTTTGCCACTGG 810
|| |||| ||||| ||||||| ||||| |||||||| ||| ||||| ||||| |||||
Sbjct 634 GTTAGAGCCTACACACAATCTGTGGCTACGTTGAATCT-CTTGAGAGCATTTGCTACTGG 692
Query 811 AGGTTACGCTGCTATTCAAAGAGTTA-CTCAATGGAACCTTGATTTTGTTGAACAAAGTG 869
|||||| || ||||| |||||||||| | || ||||| |||||||| |||| ||||
Sbjct 693 AGGTTATGCAGCTATGCAAAGAGTTAGC-CAGTGGAATCTTGATTTCACCCAACATAGTG 751
Query 870 AGCAAGCTGACAGGTACCAG-GAATTAGCTAATAGGGTTGATGAGGCCTTGGGGTTCATG 928
| || | ||||||||||| | ||||| |||||||| ||||||||||| || || ||||||
Sbjct 752 AACAGGGTGACAGGTACC-GTGAATTGGCTAATAGAGTTGATGAGGCTTTAGGATTCATG 810
Query 929 TCTGCATG-TGGACTTGGCACGG-ATCATCCACTT-ATGACTACAACTGA-TTTCTACAC 984
|||| | ||||||| || | | || || | | |||||||| ||||| ||| | ||
Sbjct 811 GGTGCA-GCTGGACTTACCAATGCA-CACCC-CATCATGACTACTACTGAGTTT-TGGAC 866
Query 985 ATCCCATGAGTGTTTGCTT-CTGCCTTATGAACA-GTCCCTTACAAG-GTTGGATTCAAC 1041
||||||||||||||| || ||||||||||| || | | || ||||| | |||||| ||
Sbjct 867 TTCCCATGAGTGTTTG-TTACTGCCTTATGAGCAAG-CACTCACAAGAGA-GGATTCCAC 923
Query 1042 TTCTGGTCTCTACTATGATTGTTCTGCACACATGGTCTGG-TGCGGAGAGCGTAC-CAGA 1099
||||| || ||||||||||| ||||| |||||| | ||| | |||||||| || | |
Sbjct 924 ATCTGGACTTTACTATGATTGCTCTGCGCACATGCTTTGGGTT-GGAGAGCGAACTC-GC 981
Query 1100 CAATTGGATGGCGCTCATGTCGAGTTTCTCAGGGGGATTGCTAATCCTCTGGGCATTAAG 1159
||| | ||||| || ||||| |||||||| || || || ||||| || || || || |||
Sbjct 982 CAACTCGATGGTGCCCATGTTGAGTTTCTGAGAGGAATCGCTAACCCCCTTGGAATCAAG 1041
Query 1160 GTGAGCAACAAAATGGATCCCTT-TGAGCTGGTTAAGCT-AGTAGAAATCCTGAATCCTA 1217
||||| | ||||||| ||||| ||| ||||||| ||| | |||| || || || |||
Sbjct 1042 GTGAGTGATAAAATGG-TCCCTAGTGAACTGGTTAGGCTGA-TAGAGATACTAAACCCTC 1099
Query 1218 ATAACAAGCCTGGAAGAATCACTGTAATTGTGAGAATGGGTGCCGAGAACATGAGAGTTA 1277
| |||||||||||||| || || || |||||||||||||| || ||||| ||| | ||||
Sbjct 1100 AGAACAAGCCTGGAAGGATTACAGTTATTGTGAGAATGGGAGCTGAGAATATGCGGGTTA 1159
Query 1278 AGCTTCCCCACCTGATCAGAGCAGTCCGCAG-ATCAGGCCAGATTGTGACATGGGTCT-G 1335
||||||| | ||||||||||||| || || | | || ||||| ||||| ||||| | |
Sbjct 1160 AGCTTCCTAATTTGATCAGAGCAGTACG-AGGAGCCGGTCAGATAGTGACTTGGGT-TAG 1217
Query 1336 CGATCCAATGCATGGAAACACCATCAAAGCACCTTGCGGTCTTAAAACACGTGCCTTT-G 1394
|||||||||||||||||||| |||| || ||| | || || ||||| ||| | ||| |
Sbjct 1218 TGATCCAATGCATGGAAACACAATCATGGCTCCTGGTGGGCTAAAAACTCGTTC-TTTCG 1276
Query 1395 ACT-CAATACTGG-CTGAAGTCCGAGCATTCCTT-GATGTGCACGAGCAAGAAGGAAGCC 1451
| | |||| | || | ||| | |||| ||| || || ||||| || |||||||| ||
Sbjct 1277 A-TGCAAT-CAGGGCGGAATTGAGAGCGTTC-TTCGACGTGCATGATCAAGAAGGGAGTT 1333
Query 1452 ACGC-GG-GCGGTATCCATCTCGAGATGACAGGTCAGAACGTGACAGAATGCATTGGAGG 1509
| | || | ||| || || | || |||||||| || ||||||||||||||| |||||||
Sbjct 1334 TCCCTGGTGGGGT-TC-ATTTAGAAATGACAGGGCAAAACGTGACAGAATGCGTTGGAGG 1391
Query 1510 GTCCCGCACTGTGACCTACGATGACCTCAGTTCTCGCTACCACACACACTGTGACCCAAG 1569
||| ||||| | || ||| | || || || || ||||||||||| || |||||||||||
Sbjct 1392 GTCACGCACCATCACTTACAACGATCTAAGCTCACGCTACCACACTCATTGTGACCCAAG 1451
Query 1570 GCTGAACGCGTCACAGTCTCTTGAACTTGCCTTCATTGTTGCAGAACGGCTCAGGAA-GA 1628
||| ||||| || |||||||| || ||||| ||||| ||||||| || || | ||| ||
Sbjct 1452 GCTCAACGCCTCTCAGTCTCTGGAGCTTGCATTCATCATTGCAGAGCGTCT-ACGAAAGA 1510
Query 1629 GAAG 1632
||||
Sbjct 1511 GAAG 1514
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72066743540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5