BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39990.1
Length=1045
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490786 jgi|Araly1|490786|fgenesh2_kg.7__219__AT4G39990.1 1426 0.0
> Ahg490786 jgi|Araly1|490786|fgenesh2_kg.7__219__AT4G39990.1
Length=993
Score = 1426 bits (772), Expect = 0.0
Identities = 859/899 (96%), Gaps = 14/899 (2%)
Strand=Plus/Plus
Query 142 agagaAGTGTTTCAATAGTTTGGCGTGAAGATGGCCGGAGGAGGCGGATACGGCGGCGCA 201
|||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct 98 AGAGAAGTGTTTCAATAGTTCGCCGTCAAGATGGCCGGAGGAGGCGGATACGGCGGCGCA 157
Query 202 TCGGGGAAAGTTGATTACGTCTTCAAAGTTGTTCTAATCGGAGATTCGGCTGTTGGGAAA 261
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 158 TCGGGGAAAGTTGATTACGTCTTCAAAGTTGTTCTGATCGGAGATTCGGCTGTTGGGAAA 217
Query 262 TCGCAACTACTTGCTCGATTCGCTAGAGACGAATTCAGCATGGATTCTAAAGCCACCATC 321
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 218 TCACAACTACTTGCTCGATTCGCTAGAGACGAATTCAGTATGGATTCTAAAGCCACCATC 277
Query 322 GGCGTCGAGTTCCAAACTCGTACCCTCTCCATTGAACAAAAAAGCATTAAGGCTCAGATC 381
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 278 GGCGTCGAGTTCCAAACTCGTACGCTCTCCATTGAACAAAAAAGCATTAAGGCTCAGATC 337
Query 382 TGGGATACCGCTGGTCAGGAAAGATACAGAGCCGTTACAAGCGCATACTACAGAGGAGCA 441
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 338 TGGGATACCGCTGGTCAGGAAAGATACAGAGCAGTTACAAGCGCATACTACAGAGGAGCA 397
Query 442 GTTGGCGCAATGCTGGTTTATGATATGACGAAACGTGAGACCTTTGAGCATATTCCGCGT 501
||||| ||||||||||||||||||||||| ||||| || |||||||||||||| || |||
Sbjct 398 GTTGGTGCAATGCTGGTTTATGATATGACTAAACGCGAAACCTTTGAGCATATCCCTCGT 457
Query 502 TGGCTTGAAGAACTGAGGGCGCACGCTGATAAGAACATTGTCATCATCCTTATTGGAAAC 561
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 458 TGGCTTGAAGAACTGAGGGCGCACGCCGATAAGAACATTGTCATCATCCTTATTGGAAAC 517
Query 562 AAGTCTGATCTAGAAGATCAAAGAGCTGTTCCCACTGAAGACGCTAAAGAGTTTGCTGAG 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 518 AAGTCTGATCTAGAAGATCAAAGAGCTGTTCCCACTGAAGACGCTAAAGAGTTTGCTGAG 577
Query 622 AAGGAAGGACTCTTTTTCCTCGAGACCTCTGCTTTAAACGCAACCAATGTCGAAAACTCC 681
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 578 AAGGAAGGACTCTTTTTCCTCGAGACCTCAGCTTTAAACGCAACCAATGTCGAAAACTCC 637
Query 682 TTCAACACTCTAATGACTCAGATATACAATACCGTGAACAAGAAGAATCTTGCATCTG-- 739
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 638 TTCAACACTCTAATGACAGAGATATACAATACCGTGAACAAGAAGAATCTTGCATCTGTC 697
Query 740 -A-A-----GGCGACTCAAATAACCCCGGTTCATTGGCTGGTAAGAAGATTCTCATCCCA 792
| | ||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 698 GAGAATCAAGGCGACTCAAATAACCCCGGTTCCTTGGCTGGTAAGAAGATTGTCATCCCA 757
Query 793 GGTTCTGGACAGGAGATTCCCGCTAAGACCAGCACTTGTTGTACTTCTTCTTGATCTGTC 852
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 758 GGTTCTGGACAGGAGATTCCCGCTAAGACCAGCACATGTTGTAGTTCTTCTTGATCTGTC 817
Query 853 TCCT-ACTCAAGCAAGATTCAttttttttCCTCCTGAAATTTG-TGATAGAGAATGCTAC 910
|| | || |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 818 TCGTTAC--AAGCAAGATTCATTTTTTTTCCTCCTGAAATTTGGTGATAGAGAATGCTAC 875
Query 911 TTTCATTGTATATTCTTTTTCGAATCTGGCTTGTTTGCTAGTTCATTAAACATTGGTGTG 970
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 876 TTTCATTGTATATTCTTTTTCGAATCTGGCTTGTTTGCTGGTTCATTCAACATTGGTGTG 935
Query 971 CAATTGGACACCGATAGAAAGTATTGGAACAAATAGCTTTTGAATGAAATATGAAACAA 1029
|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 936 CAATTGGACACCGATAGAAAGTATTGGAACAA-TAGCTTTTGATTGAAATATGAAACAA 993
Score = 154 bits (83), Expect = 1e-36
Identities = 93/97 (96%), Gaps = 4/97 (4%)
Strand=Plus/Plus
Query 1 AATAATCAGCCAACTAGC-TTTTTAA--TT-TTCTCTACAATTCCTCTGTCGCTCTCACC 56
|||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||
Sbjct 1 AATAATCAGCCAACTAGCTTTTTTAATTTTCTTCTCTACAATTCCTCTGTCGCTCTCACC 60
Query 57 AGTTAACAGCTACAGCACAAAACTGTAACCACGCTTC 93
|||||||||||||||||||||||||||||||||||||
Sbjct 61 AGTTAACAGCTACAGCACAAAACTGTAACCACGCTTC 97
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38885375340
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5