BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G40000.1
Length=2528
Score E
Sequences producing significant alignments: (Bits) Value
Ahg888226 jgi|Araly1|888226|Al_scaffold_0007_212 2815 0.0
Ahg320078 jgi|Araly1|320078|fgenesh1_pm.C_scaffold_4000135 1027 0.0
Ahg944077 jgi|Araly1|944077|scaffold_700306.1 364 1e-99
Ahg944078 jgi|Araly1|944078|scaffold_700307.1 237 3e-61
Ahg944081 jgi|Araly1|944081|scaffold_700310.1 193 7e-48
Ahg352947 jgi|Araly1|352947|fgenesh1_pg.C_scaffold_7000120 193 7e-48
Ahg490786 jgi|Araly1|490786|fgenesh2_kg.7__219__AT4G39990.1 117 4e-25
> Ahg888226 jgi|Araly1|888226|Al_scaffold_0007_212
Length=1887
Score = 2815 bits (1524), Expect = 0.0
Identities = 1711/1800 (95%), Gaps = 18/1800 (1%)
Strand=Plus/Plus
Query 636 TGTGCTGCACCTGGTTCCAAGACATTTCAGCTGCTTGAAATAATACATGAATCATCAGAA 695
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 103 TGTGCTGCACCTGGTTCCAAGACATTTCAGCTGCTTGAGATAATACATGAATCATCAGAA 162
Query 696 CCAGGATCTCTACCTAATGGAATGGTGGTGGCGAATGATGTTGATTATAAAAGATCTAAT 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 163 CCAGGATCTCTACCTAATGGAATGGTGGTGGCGAATGATGTTGATTATAAAAGATGTAAC 222
Query 756 CTTCTTATTCACCAAACGAAAAGAACATGTACGACCAATTTGATGGTCACTAACAACGAA 815
|||||||||||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 223 CTTCTTATTCACCAAACGAAAAGAACATGTACAACTAACTTGATGGTCACTAACAACGAA 282
Query 816 GGTCAACATTTCCCCAGTTGCAACACCAAGAGAACCTTGTCTGTAGCATCTGAGACTAAT 875
||||||||||||||||| |||||||||||||| |||||||| ||||||||||||| ||||
Sbjct 283 GGTCAACATTTCCCCAGCTGCAACACCAAGAGGACCTTGTCCGTAGCATCTGAGATTAAT 342
Query 876 CCTCATCCCATCGATCAGCTTCTTTTTGATCGTGTCTTATGTGATGTCCCGTGTAGTGGT 935
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 343 CCTCATCCCATTGATCAGCTTCTTTTTGATCGTGTCTTATGTGATGTCCCGTGTAGTGGT 402
Query 936 GATGGTACTCTGCGCAAGGCTCCAGACATATGGCGAAGATGGAATTCTGGATCTGGCAAT 995
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 403 GATGGTACTCTGCGCAAGGCTCCAGACATATGGCGAAGA---AATTCTGGATCTGGCAAT 459
Query 996 GGACTTCATAGTCTACAGGTTGTGCTTGCCATGAGAGGTTTATCTCTGCTAAAAGTTGGT 1055
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 460 GGACTTCATAGTCTACAGGTTGTGCTTGCCATGAGA---TTATCTCTGCTAAAAGTTGGT 516
Query 1056 GGGAGAATGGTATACTCAACCTGCTCAATGAACCCAATTGAAGATGAAGCTGTTGTTGCT 1115
||| ||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 517 GGGCGAATGATATACTCCACCTGCTCAATGAACCCAATTGAAGATGAAGCCGTTGTTGCT 576
Query 1116 GAAATTCTGAGGAGATGTGGATGCTCTGTTGAGCTTGTAGATGTCTCAGATAAGCTTCCA 1175
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 577 GAAATTCTGAGGAGATGTGGATGCTCTGTTGAGCTTGTAGATGTCTCAGATAAGCTTCCT 636
Query 1176 GAACTTATTAGAAGACCAGGTCTTACGAAATGGAAGGTGCATGACAGAGGTGGCTGGTAT 1235
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 637 GAACTTATTAGAAGACCAGGTCTTACGAAATGGAAGGTGCATGATAGAGGTGGCTGGTAT 696
Query 1236 AGATCTTACAAAGATGTTCCAAAGTCACAGAGAGACGGAGTTCTTAGGAGCATGTTTCCT 1295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 AGATCTTACAAAGATGTTCCAAAGTCACAGAGAGACGGAGTTCTTAGGAGCATGTTTCCT 756
Query 1296 TCTGGTAAAAGTGATAAAGACTCATCGGGTGGCAAAAACAGCTATGAAGAAATGGCTTCT 1355
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
Sbjct 757 TCTGGTAAAAGTGATAAAGACTCAACGGGTGGCGGAAACAGCTATGAAGAAATGGCTTAT 816
Query 1356 ATCTCTTCTGATGAATCAGCCGAAGAAGTCTGTGATCTTCCCCTTGAACTTTGTATGAGG 1415
|||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 817 ATCTCTTCTGATGAATCAGCCGTGGAAGTCTGTGATCTTCCCCTTGAACGTTGTATGAGG 876
Query 1416 ATACTGCCTCATGATCAAAACACTGGGGGATTTTTCATTGCAGTCCTTCACAAAGTTTCA 1475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 877 ATACTGCCTCATGATCAAAACACTGGGGGATTTTTCATTGCAGTCCTTCACAAAGTTTCA 936
Query 1476 CCTTTACCAGACTTTCAGGAGAAAGTAACTCAGAAAAGGAATTTGTCTACTAGAAACAAC 1535
|||||||| | |||||||| ||| ||| | | | |||||||| || |||||||||||||
Sbjct 937 CCTTTACC--A-TTTCAGGATAAAATAAATAATAGAAGGAATTCGTTTACTAGAAACAAC 993
Query 1536 ATCAACTCATCTGAGAAGTCTTCTTCGTATGAAGCAGTATCTGACACTGTGGTTACTAAA 1595
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 994 ATCAACTCATCTGAGAAG---TCTTCGTATGAAGCAGTATCTGACACTGTGGTTACTAAA 1050
Query 1596 CCTGAAGAGGGTACAGAGGAAATAGTTTTAGAAGCAACAGTTTCAGAGAATGGCTTTGAG 1655
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1051 CCTGAAGAGGGTGCAGAGGAAATAGTTTTAGAAGCAACAGTTTCAGAGAATGGCTTTAAT 1110
Query 1656 CCGCCGGAGATGGAAAGCACCTG-GAATGAAGGTATCGTAGAATTGGCTCAAAAACTTGA 1714
||||| |||| |||||||||||| | ||||||||||||||||||||| ||||||||||||
Sbjct 1111 CCGCCTGAGAAGGAAAGCACCTGCG-ATGAAGGTATCGTAGAATTGGTTCAAAAACTTGA 1169
Query 1715 TGATATAGAAGGCAAGAGAGAAGTACCATCAATGCAAGGGAAGTGGAAAGGCCTTTACCC 1774
|||||| | |||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1170 TGATATGGGAGGCAAGAGAGAAGTACCGTCACTGCAAGGGAAGTGGAAAGGCCTTTACCC 1229
Query 1775 TGTTGTTTTCTTGAGAGATCAAACAGGGATCAACGGGATCAAGACATTTTACGGCATTAA 1834
||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||| ||
Sbjct 1230 TGTTGTTTTCTTGAGAGATAAAACAGTGATCGACGGGATCAAGACATTTTACGGCATCAA 1289
Query 1835 AGATGAATCGTTTCCGCTGTATGGTCATCTCGTGACTAGAAACAGCGACATAAGCAGCCA 1894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1290 AGATGAATCGTTTCCGCTGTATGGTCATCTCGTGACTAGAAACAGCGACATAAGCAGCCA 1349
Query 1895 CGGAAACGTGAAAAGGATTTACTATGTTTCGAAAGCAGTT-AAGAATGTTCTTGAGCTTA 1953
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1350 CGGAAACGTGAAAAGGATTTACTATGTTTCGAAAGCAGTTAAAG-ATGTTCTTGAGCTTA 1408
Query 1954 ATTTTGCAGTTGGGAAGCCGCTCAAGATCTCCTCTGTTGGCCTCAAGATGTTTGAGAAAC 2013
|||||||||||||||||||||| ||||| ||||||||||| |||||||| ||||||||||
Sbjct 1409 ATTTTGCAGTTGGGAAGCCGCTTAAGATTTCCTCTGTTGGTCTCAAGATCTTTGAGAAAC 1468
Query 2014 AATCTGCAAAAGAATGTGAAGCCAACTGTTGCTCATTCCGAATAACGTCAGAGGGATTGC 2073
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1469 AATCGGCAAAAGAATGTGAAGCCAACTGTTGCCCATTCCGAATAACGTCAGAGGGATTGC 1528
Query 2074 CTGTGATCCTTCCGTACATGACCAAGCAAATACTTTATGCAACAATGGCGGATTTCAAGA 2133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1529 CTGTGATCCTTCCGTACATGACCAAGCAAATACTTTATGCAACAATGGCGGATTTCAAGA 1588
Query 2134 ATCTCCTGCAACACAAATCAATCAAGTTTCTAGATTTCATACATCCACAGATTGGTGAGA 2193
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1589 ATCTCCTGCAACACAAATCAATCAAGTTCCTAGATTTCATCCATCCACAGATTGGTGAGA 1648
Query 2194 AAGCAGCAGAACTAGCCTTGGGATCTTGCGTTATGGTTCTCGTTGATGATTCTCAGCTCG 2253
|||||||| |||||||||||||||| || |||||||||||||| |||||| |||||||||
Sbjct 1649 AAGCAGCAAAACTAGCCTTGGGATCATGTGTTATGGTTCTCGTCGATGATACTCAGCTCG 1708
Query 2254 GGTCAGAACAAT-TCAAAGTGAATTCATCAACAATAGCCATTGGATGCTGGAAGGGCAAG 2312
||||||||| | |||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 1709 GGTCAGAACC-TGTCAAAGTGAAAACATCAACAATAGCCATTGGATGCTGGAAGGGGAAG 1767
Query 2313 GCTAGCTTAACCGTTATGGTCACAACAGTCGATTGTCACCAACTTATCCAGAGGCTTTCT 2372
||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||
Sbjct 1768 GCTAGCTTAACCGTTATGGTCACAACAGTGGATTGTCACCAACTTATCGAGAGACTTTCT 1827
Query 2373 GATAGAAGTAAAGAAAAAGAAAAAGCTGAGAACTGTTTCAAGACTGCTGAGACAGCTTGA 2432
||||||||||||||| ||||| ||||||||||||||| ||| |||||||||||||||||
Sbjct 1828 GATAGAAGTAAAGAAGTAGAAATAGCTGAGAACTGTTTGAAGTCTGCTGAGACAGCTTGA 1887
Score = 145 bits (78), Expect = 2e-33
Identities = 84/87 (97%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 246 GAACAAAGAATAGTGAAAGCTCAAGAGTGGGATTCGTTTATGGAGTTTCTTCGTAAGCCA 305
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAACAAAGGATAGTGAAAGCTGAAGAGTGGGATTCGTTTATGGAGTTTCTTCGTAAGCCA 60
Query 306 TTACCTGCTGCTTTCAGAGTTTATTCC 332
||||||||||||||||||||| |||||
Sbjct 61 TTACCTGCTGCTTTCAGAGTTAATTCC 87
> Ahg320078 jgi|Araly1|320078|fgenesh1_pm.C_scaffold_4000135
Length=2517
Score = 1027 bits (556), Expect = 0.0
Identities = 931/1106 (84%), Gaps = 49/1106 (4%)
Strand=Plus/Plus
Query 226 ATTTTGAGGAGTATTACAAGGAACAAAGAATAGTGAAAGCTCAAGAGTGGGATTCGTTTA 285
|||| ||||| ||||||||||||||| | ||||||||||| ||||||||||||| |||||
Sbjct 167 ATTTCGAGGAATATTACAAGGAACAAGGGATAGTGAAAGCACAAGAGTGGGATTTGTTTA 226
Query 286 TGGAGTTTCTTCGTAAGCCATTACCTGCTGC-TTTCAGAGTTTATTCCAATGGTCAATTT 344
||||| ||||||||||||| ||||||||||| ||| || ||| |||| ||||| ||||||
Sbjct 227 TGGAGATTCTTCGTAAGCCTTTACCTGCTGCGTTT-AGGGTTAATTCAAATGGCCAATTT 285
Query 345 TGTGATGAGATTCGACT-GAAATTGGAGAATGA-TTTCATGATATCTCTTCAGGCTGAGG 402
|| ||||||||| | | || |||||||||||| ||| |||| ||| |||||||||||||
Sbjct 286 TGCGATGAGATTATA-TCGATATTGGAGAATGACTTT-ATGAAATCACTTCAGGCTGAGG 343
Query 403 CTATAG-AGAGTGGTGAATTGGAGGCTATCAAG-CCTCTGCCTTGGTATCCTAAGAATCT 460
|||||| || ||||||||||||||||||| ||| ||| ||||||||||||| ||||||||
Sbjct 344 CTATAGAAG-GTGGTGAATTGGAGGCTATTAAGCCCT-TGCCTTGGTATCCGAAGAATCT 401
Query 461 TGCTTGGCATTCTAATTTTTCACGCAAGGAGATTAGGAAAAACCAGACACTTGAGAGGTT 520
|||||||||||||||||||| || ||||||||||| ||||| |||||||||||||||||
Sbjct 402 CGCTTGGCATTCTAATTTTTCTCGAAAGGAGATTAGAAAAAATCAGACACTTGAGAGGTT 461
Query 521 TCATGAGTTTCTTAAGTTAGAAACTGAAGCTGGGAACATGACCAGGCAAGAATCAGTTAG 580
|||||| ||||| || ||||||| ||||| ||| ||||| ||| |||| ||| | |||||
Sbjct 462 TCATGAATTTCTGAAATTAGAAAATGAAGTTGGAAACATAACCCGGCAGGAAGCTGTTAG 521
Query 581 CATGGTACCTCCTCTCTTCCTTGATGTACATCCAGATCATTTTGTTCTCGACATGTGTGC 640
||||||||||||||||||||| || |||||||||||||||||||| || |||||||||||
Sbjct 522 CATGGTACCTCCTCTCTTCCTAGACGTACATCCAGATCATTTTGTACTTGACATGTGTGC 581
Query 641 TGCACCTGGTTCCAAGACATTTCAGCTGCTTGAAATAATACATGAATCATCAGAACCAGG 700
|||||| |||||||| ||||||||||||||||| || ||||||||| |||||||||||||
Sbjct 582 TGCACCGGGTTCCAAAACATTTCAGCTGCTTGAGATTATACATGAAGCATCAGAACCAGG 641
Query 701 ATCTCTACCTAATGGAATGGTGGTGGCGAATGATGTTGATTATAAAAGATCTAATCTTCT 760
|||||||||||||||| |||||||||| ||||||||||||| |||||||||||| |||||
Sbjct 642 ATCTCTACCTAATGGATTGGTGGTGGCTAATGATGTTGATTTTAAAAGATCTAACCTTCT 701
Query 761 TATTCACCAAACGAAAAGAACATGTACGA-CCAATTTGATGGTCACTAA-CAACGAAGGT 818
||||||||||| || |||| || || | |||| ||||| || || || || |||||
Sbjct 702 CATTCACCAAACTAAGAGAATGTGCAC-ATCCAACTTGATAGTGACAAATCAT-GAAGGG 759
Query 819 CAACA-TTTCCCCAGTTGCAACACCAAGAGAA-CCTT-G-T-CTGTAGCATCTGAGACTA 873
||||| ||||| ||||| || | || || | | | | || | || | ||
Sbjct 760 CAACAGTTTCCTG-GTTGCCGTTTGAACA-AATCCCGAGCTTCCG-AGAAAG-GA-A-TA 813
Query 874 A-TCCTCAT---CCCATCGATCAGCTT-CTTTTTGATCGTGT-CTTATGTGATGTCCCGT 927
| | || ||||| |||| ||| | ||| || ||||| || ||||||||| ||||
Sbjct 814 AGTGAAAATATGCCCATTAATCAACTTGCCTTT-GACCGTGTTCT-ATGTGATGTTCCGT 871
Query 928 GTAGTGGTGATGGTACTCTGCGCAAGGCTCCAGACATATGGCG-AAGATGGAATTCTGGA 986
| |||||||||||||| |||||||||||||||||||| ||||| || |||||| ||||||
Sbjct 872 GCAGTGGTGATGGTACACTGCGCAAGGCTCCAGACATCTGGCGGAA-ATGGAACTCTGGA 930
Query 987 TCTGG-CAATGGACTTCATAGTCTACAGGTTGTGCTTGCCATGAGAGGTTTATCTCTGCT 1045
||| ||||||||||||||| || ||| || | ||||| |||||||||||||||||| |
Sbjct 931 A-TGGGCAATGGACTTCATAGCCTTCAGATTATTCTTGCTATGAGAGGTTTATCTCTGTT 989
Query 1046 -AAAAGTTGGTGGGA-GAATGGTATACTCAACCTGCTCAATGAACCCAATTGAAGATGAA 1103
|||| ||||||||| || || |||||||||||||||||||||||||| | || || |||
Sbjct 990 GAAAA-TTGGTGGGAAGA-TGATATACTCAACCTGCTCAATGAACCCAGTGGAGGACGAA 1047
Query 1104 GCTGTTGTTGCTGAAATTCTGAGGAGATGTGGATG-CTCTGTTGAGCTTGTAGATGTCTC 1162
|||||||||||||| ||||| ||||| |||||| | ||||||||| ||| ||||||| ||
Sbjct 1048 GCTGTTGTTGCTGAGATTCTAAGGAGGTGTGGA-GACTCTGTTGAACTTTTAGATGTTTC 1106
Query 1163 AGATAAGCTTCCAGAACTTATTA-GAAGACCAGGTCTTACGAAATGGAAGGTGCATGACA 1221
||||||||||| |||||||| | ||||||||||||||| |||||||||||||| ||| |
Sbjct 1107 CGATAAGCTTCCTGAACTTAT-ACGAAGACCAGGTCTTAAGAAATGGAAGGTGCGTGATA 1165
Query 1222 GAGGTGGCTGGTATAGATCTTACAAAGATGTTCCA-AAGTCACAGAGAGACGGAGTTCTT 1280
|||||| |||| || |||||||||||||| ||| || | | ||||| |||||||||
Sbjct 1166 AAGGTGGGTGGTTTACTTCTTACAAAGATGTCCCACAAAAC-CGGAGAGGGGGAGTTCTT 1224
Query 1281 AG-GAGCATGTTTCCTTCTGGTAAAA 1305
| |||||||||||||||||| ||||
Sbjct 1225 -GTGAGCATGTTTCCTTCTGGGAAAA 1249
> Ahg944077 jgi|Araly1|944077|scaffold_700306.1
Length=733
Score = 364 bits (197), Expect = 1e-99
Identities = 215/224 (96%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 361 TGAAATTGGAGAATGATTTCATGATATCTCTTCAGGCTGAGGCTATAGAGAGTGGTGAAT 420
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1 TGAAATTGGAGAATGATTTCATGAAATATCTTCAGGCTGAGGCTATAGAGAGTGGTGAAC 60
Query 421 TGGAGGCTATCAAGCCTCTGCCTTGGTATCCTAAGAATCTTGCTTGGCATTCTAATTTTT 480
||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 61 TGGAGGCTACCAAGCCTTTGCCTTGGTACCCTAAGAATCTTGCTTGGCATTCTAATTTTT 120
Query 481 CACGCAAGGAGATTAGGAAAAACCAGACACTTGAGAGGTTTCATGAGTTTCTTAAGTTAG 540
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 121 CACGCAAGGAGATTAGCAAAAACCAGATACTTGAGAGGTTTCATGAGTTTCTTAAGTTAG 180
Query 541 AAACTGAAGCTGGGAACATGACCAGGCAAGAATCAGTTAGCATG 584
||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 181 AAACTGAAGTTGGGAACATGACCAGGCAAGAATCAGTTAGCATG 224
> Ahg944078 jgi|Araly1|944078|scaffold_700307.1
Length=1120
Score = 237 bits (128), Expect = 3e-61
Identities = 151/162 (93%), Gaps = 2/162 (1%)
Strand=Plus/Plus
Query 719 GGTGGTGGCGAATGATGTTGATTATAAAAGATCTAATCTTCTTATTCACCAAACGAAAAG 778
||||||||| ||||||||||| | |||||||||||| |||||||||| ||||||||||||
Sbjct 10 GGTGGTGGCAAATGATGTTGA-T-TAAAAGATCTAACCTTCTTATTCCCCAAACGAAAAG 67
Query 779 AACATGTACGACCAATTTGATGGTCACTAACAACGAAGGTCAACATTTCCCCAGTTGCAA 838
||||||||| ||||| ||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 68 AACATGTACCACCAACTTGATGGTCGCTAACAACGAAGGTCAACATTTCCCCAGCTGCAA 127
Query 839 CACCAAGAGAACCTTGTCTGTAGCATCTGAGACTAATCCTCA 880
|||||||||||||||||| ||||||||||||| |||||||||
Sbjct 128 CACCAAGAGAACCTTGTCCGTAGCATCTGAGATTAATCCTCA 169
> Ahg944081 jgi|Araly1|944081|scaffold_700310.1
Length=595
Score = 193 bits (104), Expect = 7e-48
Identities = 149/168 (89%), Gaps = 13/168 (8%)
Strand=Plus/Plus
Query 352 AGATTCGACTGAAATTGGAGAATGATTTCATGATATCTCTTCAGGCTGAGGCTATAGAGA 411
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 359 AGATTCAACTGAAATTGGAGAATGATTTCATGAAATCTCTTCAGGCTGAGGCTATAGAGA 418
Query 412 GTGGTGAATTGGAGGCTATCAAGCCTCTGCCTTGGTATCCTAAGAATCTTGCTTGGCATT 471
|||||||||||||||||||||||||| |||||||||| |||||||||||| | | ||
Sbjct 419 GTGGTGAATTGGAGGCTATCAAGCCTTTGCCTTGGTACCCTAAGAATCTT--T---C-TT 472
Query 472 CTAATTTTTCACGCAAGGAGATTAGGAAAAACCAGACACTTGAGAGGT 519
| | |||||||||||||||| |||||||||| |||||||||||
Sbjct 473 -T--T----CACGCAAGGAGATTAGAAAAAACCAGATACTTGAGAGGT 513
> Ahg352947 jgi|Araly1|352947|fgenesh1_pg.C_scaffold_7000120
Length=3174
Score = 193 bits (104), Expect = 7e-48
Identities = 130/142 (92%), Gaps = 3/142 (2%)
Strand=Plus/Minus
Query 2316 AGCTT-AA-CCGTTATGGTCACAACAGTCGATTGTCACCAACTTATCCAGAGGCTTTCTG 2373
||||| || |||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 2786 AGCTTAAAGCCGTTATGGTCACAACAGTCGATTGTCACCAACTTATCAAGAGACTTTCTG 2727
Query 2374 ATAGAAGTAAAGAAAAAGAAAAAGCTGAGAACTGTTTCAAGACTGCTGAGACAGCTTGAA 2433
|||||||||||||| ||||| ||||||||||||||| |||||| |||||||||||||||
Sbjct 2726 ATAGAAGTAAAGAAGTAGAAATAGCTGAGAACTGTTTGAAGACTACTGAGACAGCTTGAA 2667
Query 2434 GCTGACGTTAACTCTCAAAGAC 2455
||||| | |||||||||||||
Sbjct 2666 GCTGATAT-AACTCTCAAAGAC 2646
> Ahg490786 jgi|Araly1|490786|fgenesh2_kg.7__219__AT4G39990.1
Length=993
Score = 117 bits (63), Expect = 4e-25
Identities = 68/70 (97%), Gaps = 1/70 (1%)
Strand=Plus/Minus
Query 2459 TTGTTTCATATTTCATTCAAAAGCTATTTGTTCCAATACTTTCTATCGGTGTCCAATTGC 2518
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 993 TTGTTTCATATTTCAATCAAAAGCTA-TTGTTCCAATACTTTCTATCGGTGTCCAATTGC 935
Query 2519 ACACCAATGT 2528
||||||||||
Sbjct 934 ACACCAATGT 925
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95301792990
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5