BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G40010.1
Length=1053
Score E
Sequences producing significant alignments: (Bits) Value
Ahg353011 jgi|Araly1|353011|fgenesh1_pg.C_scaffold_7000184 1729 0.0
> Ahg353011 jgi|Araly1|353011|fgenesh1_pg.C_scaffold_7000184
Length=1053
Score = 1729 bits (936), Expect = 0.0
Identities = 1014/1053 (96%), Gaps = 0/1053 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAGATACGACATCTTAAGAGATCTTGGTTCCGGTAACTTTGGAGTTGCTAAGCTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGAGATACGACATCTTAAGAGATCTTGGTTCCGGTAACTTTGGAGTTGCTAAGCTT 60
Query 61 GTCAGAGAAAAAGCCAACGGAGAGTTTTACGCCGTTAAATACATCGAAAGAGGCCTTAAG 120
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 GTCAGAGAGAAAGCCAACGGAGAGTTTTATGCCGTTAAATACATCGAAAGAGGCCTTAAG 120
Query 121 ATTGATGAACATGTTCAGAGAGAGATCATAAACCACAGAGACTTGAAGCATCCTAATATC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATTGATGAACATGTTCAGAGAGAGATCATAAACCACAGAGACTTGAAGCATCCTAATATC 180
Query 181 ATCAGATTTAAAGAGGTTTTTGTAACACCAACACATCTTGCCATAGTAATGGAGTATGCA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATCAGATTTAAAGAGGTTTTTGTAACACCAACACATCTTGCCATAGTAATGGAGTATGCA 240
Query 241 GCTGGTGGTGAACTTTTTGAAAGAATTTGCAATGCCGGTAGATTCAGCGAAGACGAAGGA 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 241 GCTGGTGGTGAACTTTTTGAAAGAATTTGCAATGCCGGTAGATTCAGCGAAGACGAAGCA 300
Query 301 AGATATTATTTCAAACAACTTATCTCGGGAGTTAGCTATTGTCACGCTATGCAAATATGT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGATATTATTTCAAACAACTTATCTCGGGAGTTAGCTATTGTCACGCTATGCAAATATGT 360
Query 361 CACAGAGACCTTAAGCTCGAGAATACACTCTTAGACGGGAGCCCGTCGTCGCATCTTAAA 420
||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct 361 CACAGAGACCTTAAGCTCGAGAATACACTCTTAGACGGGAGCCCGTCTTCGCAGCTCAAA 420
Query 421 ATATGTGATTTTGGATACTCCAAGTCATCAGTTTTACACTCTCAACCAAAATCCACCGTG 480
||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 421 ATATGCGATTTTGGATACTCGAAGTCATCAGTTTTACACTCTCAGCCAAAATCCACCGTG 480
Query 481 GGAACTCCGGCTTACGTTGCTCCGGAAGTCTTGTCCCGGAAAGAATATAATGGAAAGATT 540
||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 481 GGAACGCCAGCTTACGTTGCTCCGGAAGTTTTGTCCCGGAAAGAATATAATGGAAAGATT 540
Query 541 GCAGATGTGTGGTCGTGTGGGGTGACCTTATATGTAATGTTAGTTGGTGCTTATCCCTTT 600
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 541 GCAGATGTATGGTCGTGTGGGGTGACCTTATATGTAATGTTAGTTGGTGCCTATCCCTTT 600
Query 601 GAAGATCCCGAAGATCCACGGAACATTAGAAACACCATTCAGAGGATATTAAGTGTACAC 660
|||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||
Sbjct 601 GAAGATCCCGAAGATCCAAGAAACATTAGAAAAACCATTCAGAGGATATTAAGTGTACAT 660
Query 661 TACACCATACCGGATTACGTCAGGATTTCCTCCGAGTGCAAGCATCTCTTGTCTCGTATC 720
|||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 661 TACACCATACCGGACTACGTCTGGATTTCCTCCGAGTGCAAGCATCTCTTATCTCGTATC 720
Query 721 TTTGTGGCTGACCCTGATAAGAGAATAACTGTACCGGAAATCGAAAAGCACCCGTGGTTC 780
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TTCGTGGCTGACCCTGATAAGAGAATAACTGTACCGGAAATCGAAAAGCACCCGTGGTTC 780
Query 781 TTGAAGGGCCCTTTGGTTGTGCCGCCGGAGGAAGAGAAATGCGATAATGGAGTTgaagaa 840
||||||| ||| ||||| ||||||| ||||| |||||||||||||||||||| |||||
Sbjct 781 TTGAAGGATCCTCTGGTTATGCCGCCAGAGGAGGAGAAATGCGATAATGGAGTGGAAGAT 840
Query 841 gaagaagaagaagaagagaagtgtcgacagagtgttgaagagatagtgaagataatagag 900
||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 841 GAAGAAGCAGCAGAAGAGAAGTGTCGACAGAGTGTTGAAGAGATAGTGAAGATCATAGAG 900
Query 901 gaagcaagaAAGGGAGTAAATGGTACGGATAATAATGGTGGATTAGGGTTAATAGATGGG 960
||||||||||||||||| ||||||| | ||||||||| ||||||||||||||||||||||
Sbjct 901 GAAGCAAGAAAGGGAGTGAATGGTATGAATAATAATGATGGATTAGGGTTAATAGATGGG 960
Query 961 AGCAttgatcttgatgatattgatgatgctgatatttatgatgatgttgatgatgatgaG 1020
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 AGCATTGATCTTGATGATATTGATGATGCTGATATTTATGATGATGTTGATGATGATGAA 1020
Query 1021 GAGAGAAATGGTGATTTCGTATGTGCTCTATGA 1053
||||||||||||||||| |||||||||||||||
Sbjct 1021 GAGAGAAATGGTGATTTTGTATGTGCTCTATGA 1053
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39190358676
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5