BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G40020.1
Length=1848
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944007 jgi|Araly1|944007|scaffold_700236.1 2872 0.0
Ahg944135 jgi|Araly1|944135|scaffold_700364.1 215 1e-54
> Ahg944007 jgi|Araly1|944007|scaffold_700236.1
Length=1902
Score = 2872 bits (1555), Expect = 0.0
Identities = 1764/1863 (95%), Gaps = 21/1863 (1%)
Strand=Plus/Plus
Query 1 ATGGGAGAAGTCGATGAGAAACCGTCCATTGATGTAGCTTCTCCAAGGTATTCATCGAAC 60
||||||||||| |||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct 22 ATGGGAGAAGTAGATGAGAAACCGTCCATTGATGTAGCTTCTCCGAGGTATTCTTCTAAC 81
Query 61 AAAGTTGCGGATATTGGTACAGAGCTTTACAAAATGAAAGCTTCCCTTGAGAACAGAGAA 120
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 82 AAAGTTGCGGATATTGATACAGAGCTTTACAAGATGAAAGCTTCCCTTGAGAACAGAGAA 141
Query 121 AACGAAGTCGTTTCTTTAAAA-CAAGAGTTATTGAAGAAAGACATCTTCATCAAGAATCT 179
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 142 AACGAAGTCGTTTCTTTAAAAGC-CGAGTTATTGAAGAAAGACATCTTCATCAAGAATCT 200
Query 180 TGAAGCTGCAGAGAAGAAACTGCTTGATTCGTTTAAAGATCAATCGAGAGAGTTAGAGGA 239
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 201 TGAAGCTTCAGAGAAGAAACTGCTTGATTCATTTAAAGATCAATCGAGAGAGTTAGAGGA 260
Query 240 AACCAAAGCTTTGGTAGAAGAGTCAAAGGTAGAGATTGCTTCATTAAAAGAGAAGATAGA 299
|||||| |||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 261 AACCAAGGCTTTGGTAGAAGAATCGAAGGTAGAGATCGCTTCATTAAAAGAGAAGATAGA 320
Query 300 TACATCTTACAATAGCCAAGATTCCAGCGAGGAAGAC------GAAGACGATAGTTCTGT 353
||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 321 GACATCTTACAATAGCCAAGATTCGAGCGAGGAAGACGAAGAAGAAGACGATAGTTCTGT 380
Query 354 TCAGGATTTTGATATTGAGTCTTTGAAGACTGAGATGGAATCGACCAAGGAGAGTCTTGC 413
|||||||||||||||||||||| |||||| |||||||||||| || |||||| ||| ||
Sbjct 381 TCAGGATTTTGATATTGAGTCTATGAAGATTGAGATGGAATCAACAAAGGAGTCTCTCGC 440
Query 414 ACAGGCTCATGAGGCTGCACAAGCCTCTTCTTTAAAGGTTTCTGAATTGTTAGAAGAGAT 473
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 441 ACATGCTCATGAGGCTGCACAAGCTTCTTCTTTAAAGGTTTCTGAATTGTTAGAAGAGAT 500
Query 474 GAAATCGGTTAAGAACGAGCTTAAATCAGCGACTGATGCAGAGATGACTAACGAGAAAGC 533
|||||||||||||| ||||||||||||||||||||||||||| ||||| | |||||||||
Sbjct 501 GAAATCGGTTAAGAGCGAGCTTAAATCAGCGACTGATGCAGAAATGACGAGCGAGAAAGC 560
Query 534 AATGGATGATTTGGCTTTAGCTTTGAAAGAGGTAGCTACTGATTGTAGCCAAACGAAAGA 593
|||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||
Sbjct 561 TATGGATGATTTGGCATTGGCTTTGAAAGAGGTAGCTACTGATTCTAGCCAAACGAAAGA 620
Query 594 GAAGCTTGTGATTGTGGAAACAGAGCTCGAGGCTGCTAGGATAGAGTCTCAGCAATGGAA 653
|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 621 GAAGCTTGTGATTGCAGAAACAGAGCTCGAGGCTGCTAGGTTAGAGTCTCAGCAATGGAA 680
Query 654 GGACAAGTACGAGGAAGTGAGGAAAGATGCTGAATTACTTAAGAACACGAGTGAGAGACT 713
||| |||||||| |||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 681 GGAGAAGTACGACGAAGTGAGGAAAGAAGCTGAATTGCTTAAGAACACGAGTGAGAGACT 740
Query 714 AAGGATTGAAGCAGAGGAATCGCTTTTGGCTTGGAATGGGAAAGAATCTGTGTTTGTGAC 773
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 741 AAGGATTGAAGCAGAGGAATCACTTTTGGCTTGGAATGGGAAAGAATCTGTGTTTGTGAG 800
Query 774 TTGTATAAAGAGAGGAGAAGATGAGAAGAATTCACTTCTTGATGAGAACAATAGGTTGCT 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 TTGTATAAAGAGAGGAGAAGATGAGAAGAATTCACTTCTTGATGAGAACAATAGGTTGCT 860
Query 834 TGAGGCTCTTGTTGCTGCTGAGAATTTGAGCAAGAAGGCTAAAGAAGAGAATCATAAGGT 893
||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 861 TGAAGCTCTTGTCGCTGCTGAGAATTTGAGCAAGAAGGCTAAAGAAGAGAACCATAAGGT 920
Query 894 TAGGGATATACTAAAACAAGCGATTAACGAAGCTAATGTTGCGAAAGAAGCAGCTGGG-A 952
||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 921 TAGAGATATACTTAAACAAGCGATTAACGAAGCTAATGTTGCGAAAGAAGCAGC-GGGTA 979
Query 953 TTGCGAGAGCTGAGAATTCGAATTTGAAGGATGCCTTGTTGGATAAGGAAGAGGAACTGC 1012
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 980 TAGCGAGAGCTGAGAATTCGAATTTGAAAGATGCCTTGTTGGATAAGGAAGAGGAACTGC 1039
Query 1013 AGTTTGCTTTGAAGGAGATTGAGAGAGTGAAGGTTAATGAAGCTGTGGCTAATGACAATA 1072
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1040 AATTTGCTTTGAAGGAGATTGAGAGAGTGAAGGTTAATGAAGCTGTGGCTAATGACAATG 1099
Query 1073 TTAAGAAGTTGAAGAAGATGCTGTCTGAAATAGAGGTAGCTATGGAGGAAGAGAAACAGA 1132
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1100 TTAAGAAGTTGAAGAAGTTGTTGTCTGAAATAGAGGTAGCTATGGAGGAAGAGAAACAGA 1159
Query 1133 GAAGCTTAAACAGACAAGAGTCGATGCC-Aaaggaagttgtagaagttgttgagaagaag 1191
|||||||||||||||||||||||||||| |||| | | |||||||||||||||||||||
Sbjct 1160 GAAGCTTAAACAGACAAGAGTCGATGCCGAAAG-A--T-GTAGAAGTTGTTGAGAAGAAG 1215
Query 1192 attgaggagaaggagaagaaggaagagaagaaagagaacaagaaggagaagaaagagagc 1251
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1216 ATTGAAGAGAAGGAGAAGAAGGAAGAGAAGAAAGAGAACAAGAAGGAGAAGAAAGAGAGC 1275
Query 1252 aagaaggagaagaaagaacatagcgagaagaaagaagacaaggagaagaaagagcagaca 1311
|| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1276 AAAAAGGAGAAGAAAGAACATAGCGAGAAGAAGGAAGAGAAGGAGAAGAAAGAGCAGACA 1335
Query 1312 catcagaaCTTCGATAAGAGGATGATTGGGAAAACTTGTAGTTTCAGTATCATGAAGCTA 1371
||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1336 CATCAGAACATCGATAAGAAGATGATTGGGAAAACTTGTAGTTTCAGTATCATGAAGCTT 1395
Query 1372 GCTCATCACAATCACAACCACAAGCACAACAAAGAAACATCAGAGGAAGAGACAAAAAAC 1431
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1396 GCTCATCACAATCACAACCACAAGCACAACAAAGAAACATTAGAGGAAGAGACAAAAAAC 1455
Query 1432 GCAAACGGTGGGAATCATCA--AG-A-GA--ATAGTGACGAAAGTGGTGAAGGAAACTCT 1485
|||||||||||||||||||| | | || | ||||| |||||||||||||||||||||
Sbjct 1456 GCAAACGGTGGGAATCATCATCATCAAGAGCACAGTGATGAAAGTGGTGAAGGAAACTCT 1515
Query 1486 CCAAGTTCAGATTCATATCTATTCAAAGGTTCGATCTTTGATATAGCAGAGACGCCACAT 1545
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 1516 CCAAGTTCAGATTCATATCTATTCAAAGGCTCGATCTTTGATGTAGCAGAGACGCCACAT 1575
Query 1546 GCACAAATGCATCACAAAAGGAGGTCTTCGTGTACGTTTTTGGAAGAAGTAGAGACGATA 1605
|| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||
Sbjct 1576 GCGCAAATGCATCACAAAAGGAGGTCATCGTGTACGTTTTTGGAAGAAGTAGGGACAATA 1635
Query 1606 AATCCAGAGGATTTGGAGAATTTGGATGGGAATCATTTAGAAGAAGGAGAGTTAAATGAC 1665
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1636 AATCCAGAGGATTTGGAGAATTTGGATGGGAATCATTTAGAAGAAGGAGAGTTAAACGAC 1695
Query 1666 AAAGGAGCAGTAGCAAGGAAGAAGAAGGCGTTTATACGTAGATTTGGTGATCTTCTTGTT 1725
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1696 AAAGGAGCAGTAGCAAGGAAGAAGAAGGCGTTTATACGGAGATTTGGTGATCTTCTTGTT 1755
Query 1726 AGGAGGAAAAGCTTAAGTTTCTCACACAAGAAAGAATCTTCCACTGATTCACAAGATAAG 1785
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1756 AGGAGGAAAAGCTTAAGTTTCTCTCACAAGAAAGAATCTTCCACTGATTCACAAGATAAG 1815
Query 1786 CAGCAACCTCAGACTCCCACGTCTCCATCTCCGCCACTACCGCCGATGTCTCCGGAGCCC 1845
||||||||||||||||| || ||||| |||||||||||||| ||||||||||| || |||
Sbjct 1816 CAGCAACCTCAGACTCCGACTTCTCCGTCTCCGCCACTACCCCCGATGTCTCCTGAACCC 1875
Query 1846 TGA 1848
|||
Sbjct 1876 TGA 1878
> Ahg944135 jgi|Araly1|944135|scaffold_700364.1
Length=1670
Score = 215 bits (116), Expect = 1e-54
Identities = 183/213 (86%), Gaps = 13/213 (6%)
Strand=Plus/Plus
Query 715 AGGATTGAAGCAGAGGAATCGCTTT-TGGCTTGGAATGGGAAAGAATCTGTGTT-TGTGA 772
|||||||||||||| ||||| |||| | |||||||||||| ||||||||||||| ||||
Sbjct 1396 AGGATTGAAGCAGAAGAATCACTTTCT-GCTTGGAATGGG-AAGAATCTGTGTTCAGTGA 1453
Query 773 CTTGTAT--AAAGAG-AGGAG-AAGATGAGAAGAATTCACTTCTTGATGAGAACAATAGG 828
|||||| |||||| |||| ||| |||||||||||||||| ||||||||||||||||
Sbjct 1454 GTTGTATAAAAAGAGTTGGAGAAAG-TGAGAAGAATTCACTTGTTGATGAGAACAATAGA 1512
Query 829 TTGCTTGAGGCTCTTGTTGCTGCTGAGAATTTGAGCAAGAAGGCTAAAGAAGAGAATCAT 888
|||||||| ||| |||| |||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1513 TTGCTTGAAGCTTTTGTCGCTGATGAGAATCTGAGCAAGAAGGCTAAAGAAGAGAATCAT 1572
Query 889 AA---GGTTAGGGATATACTAAAACAAGCGATT 918
|| |||||| ||||| | ||||| | ||||
Sbjct 1573 AATAAGGTTAGAAATATA-TCAAACATGAGATT 1604
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69400426390
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5