BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G40040.1

Length=861
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg327957 jgi|Araly1|327957|fgenesh1_pm.C_scaffold_7000184           579    1e-164


> Ahg327957 jgi|Araly1|327957|fgenesh1_pm.C_scaffold_7000184
Length=690

 Score =  579 bits (313),  Expect = 1e-164
 Identities = 339/352 (96%), Gaps = 0/352 (0%)
 Strand=Plus/Plus

Query  99   ATGGCTCGTACTAAGCAAACAGCTCGTAAGTCTACTGGAGGAAAGGCTCCTAGGAAGCAG  158
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  1    ATGGCTCGTACTAAGCAAACAGCTCGTAAATCTACTGGAGGAAAGGCTCCTAGGAAGCAG  60

Query  159  CTTGCTACAAAGGCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCAT  218
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CTTGCTACAAAGGCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCAT  120

Query  219  CGTTACCGTCCAGGAACTGTTGCACTACGTGAAATTCGTAAGTACCAGAAGAGTACCGAG  278
            |||||| | || |||||||||||||| |||||||| |||||||||||||||||||| |||
Sbjct  121  CGTTACAGGCCTGGAACTGTTGCACTTCGTGAAATCCGTAAGTACCAGAAGAGTACTGAG  180

Query  279  TTGCTGATCAGGAAGCTCCCTTTCCAGAGGCTAGTTCGTGAGATTGCCCAGGATTTCAAG  338
            |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct  181  TTGCTGATCAGGAAGCTCCCATTCCAGAGGCTTGTTCGTGAGATTGCCCAGGATTTCAAG  240

Query  339  ACTGACTTGCGTTTCCAGAGCCATGCTGTGCTTGCACTCCAGGAGGCTGCTGAAGCATAC  398
            |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  241  ACTGACCTGCGTTTCCAGAGCCATGCTGTGCTTGCACTCCAGGAGGCTGCTGAAGCGTAC  300

Query  399  CTTGTGGGTCTCTTTGAGGACACTAACCTCTGCGCCATCCATGCCAAGCGTG  450
            |||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct  301  CTTGTGGGTCTCTTTGAGGACACTAACCTCTGTGCCATTCATGCCAAGCGTG  352



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31870758612


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5