BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G40042.1
Length=651
Score E
Sequences producing significant alignments: (Bits) Value
Ahg353015 jgi|Araly1|353015|fgenesh1_pg.C_scaffold_7000188 431 3e-120
> Ahg353015 jgi|Araly1|353015|fgenesh1_pg.C_scaffold_7000188
Length=327
Score = 431 bits (233), Expect = 3e-120
Identities = 269/286 (94%), Gaps = 3/286 (1%)
Strand=Plus/Plus
Query 92 AGATATGGATTGGCAAGGGCAGAAATTGGCGGAGCAGTTAATGCAGATCCTGCTTCTGAT 151
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 45 AGATATGGATTGGCAAGGACAGAAATTGGCGGAGCAGTTAATGCAGATCCTGCTTTTGAT 104
Query 152 CGCCGCCGTTGTGTCGTTCGTTGTTGGTTACACAACGGCGTCGTTTAGGATGATGATGTT 211
||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 105 CGCCGCCGTTGTGGCGTTCGTTGTTGGTTACGCAACGGCGTCGTTTAGGACGATGATGTT 164
Query 212 GATTTACGCCGGAGGTGTTGTTCTGACGACTCTGATCACAATACCTAATTGGCCTTGCTT 271
||| ||||||||||||||||| || |||||||||||||| ||||||||||||||||||||
Sbjct 165 GATCTACGCCGGAGGTGTTGTCCTCACGACTCTGATCACTATACCTAATTGGCCTTGCTT 224
Query 272 TAATCGTCATCATCTTAAGTGGTTAGATCCAAGTGAAGCAGAGAAACATCCTAAACCTCA 331
||||||||||| ||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 225 TAATCGTCATCCTCTTAAGTGGTTAGATCCAAGTGAAGCTGAGAAGCATCCAAAACCTCA 284
Query 332 AGTTGTTGTTGTTAGCTCCAAGAAGAAATCCTCCTCTAAAAAGTAG 377
|||||||||||||||||| |||||||||||||| | |||||||||
Sbjct 285 AGTTGTTGTTGTTAGCTCGAAGAAGAAATCCTC-T--AAAAAGTAG 327
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23864946042
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5