BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G40045.1

Length=725
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg353016 jgi|Araly1|353016|fgenesh1_pg.C_scaffold_7000189           475    2e-133


> Ahg353016 jgi|Araly1|353016|fgenesh1_pg.C_scaffold_7000189
Length=330

 Score =  475 bits (257),  Expect = 2e-133
 Identities = 300/319 (94%), Gaps = 9/319 (3%)
 Strand=Plus/Plus

Query  274  GAGAACAAATGCTCAAAAT---GGCA--A-CGACTCGGCCAAGGAGTCTTCTGGTGGCGG  327
            |||||||||||||||||||   ||||  | ||||||||||||||||||||| ||||||||
Sbjct  12   GAGAACAAATGCTCAAAATGGCGGCAGCAGCGACTCGGCCAAGGAGTCTTCCGGTGGCGG  71

Query  328  AAACAGACCTGTTACTAAC---GATGATGGTAATGGTTCCAAGAAAGACCAATTCGCTGG  384
            ||||||||| |||| ||||   ||||||||||||||| |||||||||||||||| |||||
Sbjct  72   AAACAGACCGGTTAGTAACGATGATGATGGTAATGGTACCAAGAAAGACCAATTTGCTGG  131

Query  385  TTTCAGTTTCAAGTGGGGAGAGCTGTTGAATCCAGATCAAGATAACTTTGTGGCTGTTGG  444
            ||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct  132  TTTTAGTTTCAAGTGGGGTGAGCTGTTGAATCCAGATCAAGATAACTTTGTGGTTGTTGG  191

Query  445  ATTAGCTGGAGTGTTGACTTGGGCTAGCCTTCAAGTCTTGTCTCAGCTTTTCTTCATCTC  504
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  192  ATTAGCTGGAGTATTGACTTGGGCTAGCCTTCAAGTCTTGTCTCAGCTTTTCTTCATCTC  251

Query  505  TTTCGCCATCCTTGTCGCTGCTCTCAAGTATTCATTTATCGCTGCTCTACTCATTTTCAT  564
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  252  TTTCGCCATCCTTGTCGCTGCTCTCAAGTATTCATTTATCGCTGCACTACTCATTTTCAT  311

Query  565  TCTCGTCACTCTCCTCTAG  583
            |||||||||||||||||||
Sbjct  312  TCTCGTCACTCTCCTCTAG  330



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26686041900


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5