BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G40050.1
Length=2257
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490794 jgi|Araly1|490794|fgenesh2_kg.7__227__AT4G40050.1 3059 0.0
> Ahg490794 jgi|Araly1|490794|fgenesh2_kg.7__227__AT4G40050.1
Length=2217
Score = 3059 bits (1656), Expect = 0.0
Identities = 2079/2271 (92%), Gaps = 78/2271 (3%)
Strand=Plus/Plus
Query 9 TTCCCATTGATTAGTTtctctctctctctTTTCCTTTGTCTCCAGAGCCGATGATAAACG 68
|||||||||||||| ||| | |||||| | || | |||| |||||||||||||||||
Sbjct 1 TTCCCATTGATTAG--TCT-T-TCTCTC---T-CTCTCTCTCTAGAGCCGATGATAAACG 52
Query 69 ACGGCGGTTTTCACCGGAACTGAGGGAAATTAAGCTGGTAAACATGGCGGGTGAAGATGT 128
||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||
Sbjct 53 ACGGCGGTTTTCACCGGAACTGAGGGAAATT-AGCT-GT-CACATGGCGGGTGAAGATGT 109
Query 129 TTCAAGCAATTTCCGAGCTTTGGTGGAGAACGCAGACCGGAAATTCGCAAGAGTTCGCGA 188
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 110 TTCAAGCAATTTCCGAGCTTTGGTGGAGAACGCTGACCGGAAATTCGCCAGAGTTCGCGA 169
Query 189 TCTTCCGGCGTTTGGAAGAGCACAGAGTCATTACTTCCAAAAGGTGTTCAAAGCTTATAT 248
|||||| ||||||||| ||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 170 TCTTCCTGCGTTTGGACGAGCACAGAGTCACTACTTCCAAAAGGTTTTCAAAGCTTATAT 229
Query 249 GAAACTATGGAACTATCAGCAATCTCATAGGTCAAAGCTGGTCGAGTCCGGTTTAAACCG 308
|||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 230 GAAACTATGGAATTATCAGCAATCTTATAGGTCGAAGCTGGTCGAGTCCGGTTTAAACCG 289
Query 309 ATGGGAAATCGGCGAGATCGCGAGCCGGATTGGTCAGCTTTACTTTAGTCAATACATGAG 368
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 290 ATGGGAAATCGGCGAGATCGCGAGCCGGATTGGTCAGCTTTACTTTAGTCAGTACATGAG 349
Query 369 GACTAGTGAAGCTAGGTTTCTTCTTGAGGCTTTTGTTTTCTATGAAGCGATTTTGAAAAG 428
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||
Sbjct 350 GACTAGTGAAGCTAGGTTTCTTCTTGAGGCTTATGTCTTCTATGAAGCGATTTTGAGGAG 409
Query 429 GAGCTACTTTGATGAAGCTCAGGGGAAAGATCTTGGTGCTCGATTTAAGGAGTTACGCTT 488
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 410 GAGGTACTTTGATGAAGCTCAAGGGAAAGATCTTGGTGCTCGATTTAAGGAGTTACGGTT 469
Query 489 CTATGCCAGGTTTCTGCTTGTTTCGTTGATTGTTGATCGGAAACAAATGCTTTTGCACTT 548
||||| |||||| |||||||||| |||||||||||||||||| ||||| ||||||| ||
Sbjct 470 TTATGCGAGGTTTTTGCTTGTTTCCTTGATTGTTGATCGGAAAGAAATGGTTTTGCATTT 529
Query 549 AGCTGACAAGCTTAGGCTTTTGGTTGATCACAGCATATCCAATTTTAGGGAGACAAACTT 608
|||||| ||||||||| ||||||||||| |||||| ||| ||||| ||||||||||||||
Sbjct 530 AGCTGAGAAGCTTAGGGTTTTGGTTGATGACAGCAAATCTAATTTCAGGGAGACAAACTT 589
Query 609 TAAGGAGTGGAGGCTAGTTGTGCAAGAAATCACTCGCTTTAT-AGAATCTGATACAAATT 667
|||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||
Sbjct 590 TAAGGAGTGGAGGCTAGTTGTGCAAGAAATCACTCGGTTTATTA-AATCTGATACAAATT 648
Query 668 TAACTTATCTCAGGCCTCTACGTTACTGTGCAATGCTTGATTCATATCCAGCTTCTCAAA 727
|||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 649 TAACTTATGTTAGGCCTCTACGTTATTGTGCAATGCTTGATTCATATCCAGCTTCTCAAA 708
Query 728 CTTATCTTGCGCGCTTCCACGCTAAGAAATTGTTTAAGTTTCGTGATGCTCTCTTGGCAA 787
| ||||| ||||| |||||||||||||| ||||||||||||||||||||||| ||||| |
Sbjct 709 CATATCTAGCGCGGTTCCACGCTAAGAAGTTGTTTAAGTTTCGTGATGCTCTTTTGGCTA 768
Query 788 GTTATCACCGTAATGAGGTGAAATATGCTGAAGTGACGTTGGATACGTATAGAATGATGC 847
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 769 GTTATCACCGTAATGAGGTGAAATATGCTGAAGTCACCTTGGATACGTATAGAATGATGC 828
Query 848 AGTGTTTAGAATGGGAACCCAGTGGATCTTTTTACCaaaaaaaGCCTGTTG---AAGCCA 904
||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
Sbjct 829 AGTGTTTAGAATGGGAACCCAGTGGATCTTTTTACCAAAAACGGCCTGTTGTTGAAGCGA 888
Query 905 AGGAGAATGGGTTTGTGGTTGATCATACTTTAACTTCTGGGCTTATAGATATGAACTTGG 964
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 889 AGGAGAATGGTTTTGTGATTGATCATACTTTAACTTCTGGGCTTATAGATATGAAGTTGG 948
Query 965 CTGCTGATATGGCTGATCCATCATTACCTCCTAATCCTAGGAAAGCTATTCTTTATCGTC 1024
|||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 949 CTGCCGATATGGCTGATCCATCATTACCTCCTAATCCTAGAAAAGCAATTCTTTATCGTC 1008
Query 1025 CCACAGTATCACACTTACTAGCGGTCTTGGCAATGATTTGTGATGAGCTCTCTCCAGAGA 1084
|||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1009 CCACGGTATCTCACTTGCTAGCGGTCTTGGCAATGATTTGTGATGAGCTCTCTCCTGAGA 1068
Query 1085 CTGTGATGCTGTTATATTTGTCAGCTTCAGGTGGTCCTGCTCGTGAAAATGTTGCGCAAC 1144
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1069 CTGTGATGCTGTTATATTTGTCAGCTTCAGGTGGTCCTGCTCGTGATAATGTTGCGCAAC 1128
Query 1145 CAGAGAACTCTGTCGGTTCAAGCAGAACATCAAAAAGCAAGCTGCTTGCCCGAGCTTCCC 1204
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1129 CAGAGAACTTTGTCGGTTCAAGCAGAACATCAAAAAGCAAGCTGCTTGCACGAGCCTCCC 1188
Query 1205 AAGAACAGAAAAGTTACAAGTCAGAACCTCATAGCAATGGAAAACTAAT-GTC-GGCTGA 1262
|||||||||||||||||||||||||||| ||||||||||||||| | | ||| || |||
Sbjct 1189 AAGAACAGAAAAGTTACAAGTCAGAACCACATAGCAATGGAAAAATG-TCGTCTGG-TGA 1246
Query 1263 GTACTATGAAAATCACCTCTGGTTAGGTCCTAGAGGAGGAAGCTCTGGTTCAAACAACCT 1322
|| ||||| |||| ||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 1247 TTATTATGAGGATCATCTCTGGTTAGGTCCTAGAGGAGG---CTCTGGTTCAAACAATCT 1303
Query 1323 TTACCCTGGTGACCTAATCCCTTTTACACGGAAACCACTTTTCTTGATCATTGATAGCGA 1382
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1304 TTACCCTGGTGATCTAATCCCTTTTACACGGAAACCACTTTTCTTGATCATTGATAGCGA 1363
Query 1383 CACTAGCCGTGCATTCAAGG---T---T-TT--GGGCGGCGCAGAGAGAGGCGAGCCTGT 1433
|||||||||||||||||||| | | || ||| |||||||||||||||||||||||
Sbjct 1364 CACTAGCCGTGCATTCAAGGCAGTAACTGTTTTGGGTGGCGCAGAGAGAGGCGAGCCTGT 1423
Query 1434 TGCTATGCTTCTTTCTCCTCTGAAGCCATCATTCGAGAACCCATCTACTGATGAT-A--C 1490
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1424 TGCTATGCTTCTTTCTCCTCTGAAGCCATCATTCGAGAACCCATCTACTGATGATGATAC 1483
Query 1491 GGAAGCACTAAATGGAAGTCAGTTTACTTTTTTCTTAACAGCTCCTTTACAAGCATTCTG 1550
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1484 AGAAGCACTAAACGGAAGTCAGTTTACTTTTTTCTTAACAGCTCCTTTACAAGCATTCTG 1543
Query 1551 TCAAATGCTGGGCCTCTCAAACACCAAACCT-GACCCTGAA-TTATGTGATGAAGCAGAG 1608
||||||||| |||||||||||| | ||||| ||||||||| || | |||||||||||||
Sbjct 1544 TCAAATGCTTGGCCTCTCAAACTC-AAACCCCGACCCTGAAGTT-TATGATGAAGCAGAG 1601
Query 1609 AGCATACTTTCTGCTTCCTTTTCCGAGTGGGAAACGATTCTCTTGACTTCCAAAGTCTTG 1668
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1602 AGCATACTTTCTGCTTCCTTTTCTGAGTGGGAAACGATTCTCTTGACTTCCAAAGTCTTG 1661
Query 1669 AATCTTGTCTGGGCACAGGTCTTACCTGATCCATTCTTGAGACGGCTGATTCTCAGATTC 1728
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1662 AATCTTGTCTGGGCACAGGTCTTGCCAGATCCATTCTTGAGACGGCTGATTCTCAGATTC 1721
Query 1729 ATATTCTGCCGGTCTGTACTCACTTCCTTCAGCCGCACAGAGGATGATGACCCGTATTTA 1788
||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||| ||
Sbjct 1722 ATATTCTGCCGGTCTGTACTCACTTCCTTCATCCGCACAGAGGATCATGACCTGTATCTA 1781
Query 1789 CCTCAATGCCACCCGAATCTCCCAGAGCT-GCTCTCTTCGGTATCTAAACCGGTGCAGTC 1847
|||||||||||||||||||||||||| || | |||| ||||||||||||| ||||||||
Sbjct 1782 CCTCAATGCCACCCGAATCTCCCAGA-CTCGATCTCACCGGTATCTAAACCAGTGCAGTC 1840
Query 1848 CTCAGTACAACGACTAGCTGAGCACTTGGGTGTTGCCAAATCTTTCCACTTCACCAACA- 1906
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1841 CTCAGTACAACGACTAGCTGACCACTTGGGTGTTGCCAAATCTTTCCACTTCACCAA-AT 1899
Query 1907 CATAAAATTAGAAAAATCCATCCCTGTGGTTGAGAGTAGGTTGGTGGGTGAGAGAGTAGG 1966
||||||| |||||||| || | | || | ||||||||||||| ||||||
Sbjct 1900 CATAAAACTAGAAAAA-CC--C----------A-AG--G-TTGGTGGGTGAGATAGTAGG 1942
Query 1967 TTGTTTGTTCGTTTTTGT-TATAGAAGTTTGTATTTGTTT-AGGGTATAAAGAAAAGAGA 2024
|||||||||||||||| | || |||||| ||||||| ||| |||||||||||||| ||||
Sbjct 1943 TTGTTTGTTCGTTTTT-TATAGAGAAGTCTGTATTTTTTTTAGGGTATAAAGAAA-GAGA 2000
Query 2025 GAATTGTAATTTTTATTTTGATTTGATGATTCTTTAGTTTTGTCATATTTGTAAAAGATT 2084
||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||
Sbjct 2001 AAATTGTAATTTTTATTTTGATTTGATGATTCTTTAGTTTTGTCCT-TT-GTAAAAGATT 2058
Query 2085 AGAACAAGGTAATAATCATTAGTCTCTTCTTTAGGATGGTTTGCTTTGTGTACGAGGAGA 2144
||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 2059 AGAACCAGGTAATAATCATTAGTCTCTTCTCTAGGATGGTTTGCTTTGTGTACAAGGAGA 2118
Query 2145 GGTTAACAATATCTGTGCATTGCATTAAAGAAACTAAGAAAGTGTGACATTGTTCTATCG 2204
| |||||||||| |||||||| | ||||||||| | || | | | ||||||| |||
Sbjct 2119 GATTAACAATATATGTGCATTCCTTTAAAGAAAGTGTGACATT-T----TTGTTCTTTCG 2173
Query 2205 CTTTTTCATAAACATCTATGTAAGTTTGAGCCAAGAACGAATTAAAGATTG 2255
|||||||||| | | | ||||||||||| ||||||||| |||||||||
Sbjct 2174 CTTTTTCATA----T-T-T-TAAGTTTGAGCTAAGAACGAAATAAAGATTG 2217
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84979336595
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5