BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G40060.1
Length=1518
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490793 jgi|Araly1|490793|fgenesh2_kg.7__226__AT4G40060.1 1609 0.0
Ahg481105 jgi|Araly1|481105|fgenesh2_kg.4__165__AT2G22430.1 326 4e-88
Ahg490960 jgi|Araly1|490960|fgenesh2_kg.7__393__AT4G36740.1 89.8 5e-17
> Ahg490793 jgi|Araly1|490793|fgenesh2_kg.7__226__AT4G40060.1
Length=1297
Score = 1609 bits (871), Expect = 0.0
Identities = 1169/1299 (90%), Gaps = 76/1299 (6%)
Strand=Plus/Plus
Query 104 tctctctctctTTTGGACTTTCTCAATCCATATCCCTCTCTCTGTTTTTTCTAATTTGAG 163
|||||| ||||||||||||||||||||||||||| |||||| || ||||||||| |
Sbjct 70 TCTCTCCCTCTTTTGGACTTTCTCAATCCATATCTCTCTCTTTG-TTTTTCTAA--T--- 123
Query 164 CCTCTAAAGTCTCCTCGTTT-TGTTCATGTTGTTGTTCAAGTGAAGAAGCTCAATTATGT 222
| |||||||||||| ||| |||| ||| | | |||||| ||||||||||||||||||
Sbjct 124 --T-TAAAGTCTCCTC-TTTCTGTTTATG-AGAT-TTCAAGCGAAGAAGCTCAATTATGT 177
Query 223 TTACAACATTGTTGTAATTTCAAAACTTCATAAGAATTTCTCTGATAATAAAGAAAAAGC 282
||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 178 TTACAACATTGTTCTAATTTCAAAACTTCATAAGAATTTCTCTGATAATAAAG--AAA-- 233
Query 283 TGGAGTAGAACTATTTTAAAGTGTCATCATGAAGAGACTAAGCAGCTCAGATTCAATGTG 342
| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 234 ---A--AG------------GTGTCATCATGAAGAGACTAAGCAGCTCAGATTCAATGTG 276
Query 343 TGGTCTAATCTCCACTTCTACAGATGAACAGAGTCCAAGAGGGTACGGAAGTAATTACCA 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 277 TGGTCTAATCTCCACTTCTACAGATGAACAGAGTCCAAGAGGGTACGGAAGTAATTACCA 336
Query 403 ATCTATGCTTGAAGGTTACGATGAAGATGCTACACTAATCGAGGAATATTCCGGCAACCA 462
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 337 ATCTATGCTTGAAGGTTACGATGAAGATACTACACTAATGGAGGAATATTCCGGCAACCA 396
Query 463 CCACCACATGGGTCTATCGGAGAAGAAGAGAAGATTAAAAGTTGACCAAGTCAAAGCTCT 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 397 CCACCACATGGGTCTATCGGAGAAGAAGAGAAGATTAAAAGTTGACCAAGTCAAAGCTCT 456
Query 523 TGAGAAGAATTTCGAACTTGAGAATAAACTCGAACCTGAGAGGAAAACTAAATTAGCACA 582
|||||||||||||||||||||||| |||||||| |||||||||||||| ||| |||||||
Sbjct 457 TGAGAAGAATTTCGAACTTGAGAACAAACTCGAGCCTGAGAGGAAAACGAAACTAGCACA 516
Query 583 AGAGCTTGGACTTCAACCTCGTCAAGTAGCTGTTTGGTTTCAGAACCGTCGTGCACGGTG 642
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 517 AGAGCTTGGACTTCAACCTCGTCAAGTAGCGGTTTGGTTTCAGAACCGTCGTGCACGGTG 576
Query 643 GAAAACAAAACAGCTTGAAAAAGATTACGGTGTTCTTAAGGGTCAATACGATTCTCTCCG 702
|||||||||||||||||| ||||||||||| ||||||||| | |||||||||||||||||
Sbjct 577 GAAAACAAAACAGCTTGAGAAAGATTACGGCGTTCTTAAGAGCCAATACGATTCTCTCCG 636
Query 703 CCACAATTTCGATTCTCTCCGCCGTGACAATGATTCCCTTCTCCAAGAGATTAGTAAAAT 762
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 637 CCACAATTTCGATTCTCTCCGCCGTGACAACGATTGTCTTCTCCAAGAGATTAGTAAAAT 696
Query 763 CAAAGCTAAGGTAAACGGTGAAGAAGATAACAACAACAACAAAGCTATTACGGAGGGTGT 822
|||||||||| ||||||| ||||||||||||||||||||||||| | |||||| | ||
Sbjct 697 CAAAGCTAAGATAAACGGAGAAGAAGATAACAACAACAACAAAGTTGCGACGGAGAGCGT 756
Query 823 TAAGGAAGAGGAAGTTCACAAGACGGATTCGATTCCTTCGTCTCCTCTGCAGTTTCTAGA 882
||||||||| ||| ||||||||||| |||| ||||| |||||||||||||||||||||||
Sbjct 757 TAAGGAAGAAGAATTTCACAAGACGAATTCAATTCCGTCGTCTCCTCTGCAGTTTCTAGA 816
Query 883 ACATTCCTCTGGTTTTAACTACCGGCGAAGCTTCACTGACCTCCGTGACCTTCTACCGAA 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 817 ACATTCCTCTGGTTTTAACTACCGGCGAAGCTTCACTGACCTCCGTGACCTTCTACCGAA 876
Query 943 TTCCACCGTTGTCGAGGCTGGATCTTCCGATAGTTGCGATTCAAGCGCCGTTCTTAACGA 1002
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 877 TTCCACCGTTGTCGAGGCTGGATCTTCCGATAGTTGCGATTCAAGCGCTGTTCTTAACGA 936
Query 1003 CGAAACAAGTTCTGATAACGGAAGATTGACGCCGCCTGTGACGGTTACTGGCGGGAGTTT 1062
|||||| || ||||| |||||||||||||||||||| |||||||| || |||||||||||
Sbjct 937 CGAAACGAGCTCTGACAACGGAAGATTGACGCCGCCCGTGACGGTAACCGGCGGGAGTTT 996
Query 1063 CTTACAGTTTGTGAAAACAGAGCAAACAGAGGATCACGAGGATTTTCTAAGCGGTGAAGA 1122
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 997 CTTACAGTTTGTGAAAACGGAGCAAACAGAGGATCACGACGATTTTCTAAGCGGTGAAGA 1056
Query 1123 AGCTTGTGGTTTCTTCTCCGATGAACAGCCGCCGTCACTTCATTGGTACTCTGCTTCAGA 1182
||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct 1057 AGCTTGTGGTTTCTTCTCCGATGAACAACCTCCGTCACTTCATTGGTACTCTGCTTCGGA 1116
Query 1183 TCATTGGACTTGAGAATTGTTTATCAAATTGGTGCTCTGTTTAGTCTCAATG-GGAAAA- 1240
||||||||||||||| | | | | | | | | | | | ||| | || ||||||
Sbjct 1117 TCATTGGACTTGAGAGT-GCT---C---T-G-T--T-T-T--ACTCT-A-TGTGGAAAAA 1159
Query 1241 CAGAGA-AGAGGGCAAAGGTGGAATAATTGATAAATAAGGATTAAGGATGAAGGGGATTA 1299
|||| | |||||||||| ||||||| | || ||||| || |||||| | |
Sbjct 1160 CAGA-ACAGAGGGCAAAAGTGGAAT--T--ATCAATAA--AT-AAGGAT--------T-A 1202
Query 1300 TTAAATTAAATCCGCGGGAGAAGTTAATTTTGGGTTTAAGATTGTAATGGCTCTTCA-TG 1358
||||||||| || ||||||||||||||||| |||||||||||||||||||||||| | ||
Sbjct 1203 TTAAATTAACTCAGCGGGAGAAGTTAATTT-GGGTTTAAGATTGTAATGGCTCTT-AGTG 1260
Query 1359 TAATTAACGATGTCGAGAGGGGCTTTCACAGAAATAGGA 1397
||||||||||| ||||||||||||||||||||||||||
Sbjct 1261 TAATTAACGAT--CGAGAGGGGCTTTCACAGAAATAGGA 1297
Score = 111 bits (60), Expect = 1e-23
Identities = 74/80 (93%), Gaps = 4/80 (5%)
Strand=Plus/Plus
Query 1 AAAGAGAAAGTGTGAAACCAACTTGTTCATATTGAAAA----GAACCATTGCTCTCTAGA 56
||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 1 AAAGAGAAAGTGTGAAACCAACTTGCTCATATTGAAAACAAAGAACCATTGCTCTCTAGA 60
Query 57 TTAAAAGCTtctctctctct 76
||||||||||||||| ||||
Sbjct 61 TTAAAAGCTTCTCTCCCTCT 80
> Ahg481105 jgi|Araly1|481105|fgenesh2_kg.4__165__AT2G22430.1
Length=1437
Score = 326 bits (176), Expect = 4e-88
Identities = 272/318 (86%), Gaps = 8/318 (3%)
Strand=Plus/Plus
Query 467 CACATGGGTCTATCGGAGAAGAAGAGAAGATTAA-AAGTTGACCAAGTCAAAGCTCTT-G 524
||| ||||| | ||||||||||||||||| |||| | || ||||||| |||||| || |
Sbjct 330 CACGTGGGTTTGTCGGAGAAGAAGAGAAGGTTAAGCA-TTAACCAAGTTAAAGCT-TTGG 387
Query 525 AGAAGAATTTCGAACTT-GAGAATAAACTCGAACCTGAGAGGAAAACTAAATTAGCACAA 583
|||||||||| | | || |||||||| || || |||||||||||| ||| ||||| |||
Sbjct 388 AGAAGAATTTTG-AGTTAGAGAATAAGCTTGAGCCTGAGAGGAAAGTTAAGTTAGCTCAA 446
Query 584 GAGCTTGGACTTCAACCTCGTCAAGTAGCTGTTTGGTTTCAGAACCGTCGTGCACGGTGG 643
|| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 447 GAACTTGGTCTTCAGCCTCGTCAAGTAGCTGTTTGGTTTCAGAACCGTCGTGCACGGTGG 506
Query 644 AAAACAAAACAGCTTGAAAAAGATTACGGTGTTCTTAAGGGTCAATACGATTCTCTCCGC 703
|| |||||||||||||| |||||||||||||||||||| || || |||||||||||
Sbjct 507 AAGACAAAACAGCTTGAGAAAGATTACGGTGTTCTTAAAACCCAGTATGATTCTCTCCGT 566
Query 704 CACAA-TTTCGATTCTCTCCGCCGTGACAATGATTCCCTTCTCCAAGAGATTAGTAAAAT 762
||||| ||| ||||| ||||||||||||||||| || || || ||||||||||||||| |
Sbjct 567 CACAACTTT-GATTCCCTCCGCCGTGACAATGAATCTCTCCTTCAAGAGATTAGTAAACT 625
Query 763 CAAAGCTAAGGTAAACGG 780
||| ||||| | |||||
Sbjct 626 GAAAACTAAGCTTAACGG 643
> Ahg490960 jgi|Araly1|490960|fgenesh2_kg.7__393__AT4G36740.1
Length=811
Score = 89.8 bits (48), Expect = 5e-17
Identities = 63/70 (90%), Gaps = 1/70 (1%)
Strand=Plus/Plus
Query 584 GAGCTTGGACTTCAACCTCGTCAAGTAGCTGTTTGGTTTCAGAACCGTCGTGCACGGTGG 643
||||| || ||| | ||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 325 GAGCTAGGGCTTGACCCTCGTCAAGTTGCCGTTTGGTTTCAGAACCGTCGTGCACGGTGG 384
Query 644 AA-AACAAAA 652
|| |||||||
Sbjct 385 AAGAACAAAA 394
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56830645540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5