BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G40065.1

Length=1083
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg900434 jgi|Araly1|900434|Al_scaffold_0004_1084                    436    1e-121


> Ahg900434 jgi|Araly1|900434|Al_scaffold_0004_1084
Length=675

 Score =  436 bits (236),  Expect = 1e-121
 Identities = 353/408 (87%), Gaps = 13/408 (3%)
 Strand=Plus/Plus

Query  411  GTTTCGGTTCTAGCCATCTGCTTTGTCTACCTTGGTGTTGTGTTT-GACATCG-ATGGTC  468
            ||||| ||||| ||||| || ||| ||| |||||||||||||||| |  |||| || |||
Sbjct  275  GTTTCCGTTCTGGCCAT-TG-TTTCTCTGCCTTGGTGTTGTGTTTCG-TATCGAAT-GTC  330

Query  469  CTGGAAAATCTCTC-CTTGTGATGAGACGGACTCGATGCTTTTTGCCATTGGCTCTTGGA  527
            ||||||||||||||  ||||| ||||||||||||||||| ||||||||||||||||| | 
Sbjct  331  CTGGAAAATCTCTCTTTTGTGGTGAGACGGACTCGATGCCTTTTGCCATTGGCTCTTAGC  390

Query  528  TAAAAATT-TTTGGTTGGTTCTTCTATCTCTTTAAGATCTGCTTCGTTTGGAGTAT-GTG  585
            |  |  || |||||||||||||||| |||| | ||||||||||||||||||||| | |||
Sbjct  391  T-CATCTTCTTTGGTTGGTTCTTCTGTCTCATCAAGATCTGCTTCGTTTGGAGT-TCGTG  448

Query  586  GGTCACTAATTTGCCATCTTAAGTTGTATTTCTTCCAGTTTAAGGTTATCGACTTCTCGG  645
            |||| ||| ||||||||| ||||  |||| |||||||  || || |||||||||||||||
Sbjct  449  GGTCGCTATTTTGCCATCATAAGCGGTATCTCTTCCA-CTTGAGATTATCGACTTCTCGG  507

Query  646  GGTTGGTTTGGAACGTTTAATACTATTCAATGCTCTATCAAGTCTTTCAGTAGAGAGAAG  705
            |||||||||||||||||||||||||  ||| |||||||||| |||||||| ||||||| |
Sbjct  508  GGTTGGTTTGGAACGTTTAATACTACCCAAAGCTCTATCAATTCTTTCAGCAGAGAGAGG  567

Query  706  AGCTATTCAATGGGTTTTGATTCGGATCTT-TCCACAAGACAAATAAGACAATTATGCGT  764
            ||||||||||||||||||||||||| || | ||||||||| ||||||| || || |||||
Sbjct  568  AGCTATTCAATGGGTTTTGATTCGGTTCCTCTCCACAAGATAAATAAGGCATTTGTGCGT  627

Query  765  CGATCTCTTAGTTTCAAGTTCAGTCATTTTCCTTTCAGATTCTCATGA  812
            ||||| ||||||||||||||||| | ||||||||| |||||||| |||
Sbjct  628  CGATCCCTTAGTTTCAAGTTCAGGCCTTTTCCTTTGAGATTCTCGTGA  675



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 40334046186


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5