BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G40070.1
Length=1357
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944017 jgi|Araly1|944017|scaffold_700246.1 1413 0.0
Ahg888235 jgi|Araly1|888235|Al_scaffold_0007_221 822 0.0
> Ahg944017 jgi|Araly1|944017|scaffold_700246.1
Length=1014
Score = 1413 bits (765), Expect = 0.0
Identities = 939/1022 (92%), Gaps = 16/1022 (2%)
Strand=Plus/Plus
Query 94 CCGGCGTCGCTTCGAACGACCGATGATGACACGCGTCGAGTGTTTTAATCC-TCACCGTT 152
|||||||||||||||| || | |||||||||||||||||||||||| || || |||||
Sbjct 1 CCGGCGTCGCTTCGAATGA---ACGATGACACGCGTCGAGTGTTTTAA-CCGTCTCCGTT 56
Query 153 GGATTA---TCTTACACGTGGCAATCATCATACAGAGCAAAGCCAATGCCCAATCTTTCT 209
|||||| |||| ||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 57 GGATTATCTTCTTCCACGTGGCAATCATCCTACAGAGCAAAGCCAATGCCCAATCATTCT 116
Query 210 CACCGAGTCCACCCGACTTGCAAACGGGTCACACTCCGTCGAAGACCACCGTCTTCGCCG 269
|||||||||| || || |||||| ||||||||||||||||||||||||| ||||| |||
Sbjct 117 CACCGAGTCCGCCTGATTTGCAACCGGGTCACACTCCGTCGAAGACCACGGTCTTTACCG 176
Query 270 TTCTCGTAACCCTCTTCTTCCTCACCGGATTACTCTCCGTCTATATTCGCCATTGCGCTC 329
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 177 TTCTCGTCGCCCTCTTCTTCCTCACCGGATTACTCTCCGTCTATATCCGCCATTGCACTC 236
Query 330 GCTCTAATCCTGATTCCTCCACCAGATACTTCCGCAACCGAGCTAACGACGGCAGTTCAC 389
||||||| || |||||||||||||||||||||||| ||| |||||||||| | ||||||
Sbjct 237 GCTCTAACCCCGATTCCTCCACCAGATACTTCCGCCGCCGCGCTAACGACGACTGTTCAC 296
Query 390 GGCGAGGCGGTCTTGACAACGCCGTCGTCGAAAGCTTCCCTGTTTTCGCTTACTCCTCTG 449
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 297 GGCGAGGCGGACTTGACAACGCCGTCGTCGAAAGCTTCCCTGTTTTCGCTTACTCCACCG 356
Query 450 TTAAAGAATCCAAAATCGGATCCAAGGATTTAGAATGTGCGATTTGTCTCAACGAATTAG 509
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 357 TTAAAGAATCGAAGATCGGATCCAAGGATTTAGAATGTGCGATTTGTCTCAACGAATTGG 416
Query 510 AAGATCATGAAACAGTGCGATTGCTTCCGATTTGTAACCATTTGTTCCATATCGATTGTA 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 AAGATCATGAAACAGTGCGATTGCTTCCGATTTGTAACCATTTGTTCCATATCGATTGTA 476
Query 570 TCGATACTTGGCTTTACTCGCACGCAACTTGCCCTGTTTGCAGATCTAATCTCACCGCGA 629
|||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 477 TCGACGCTTGGCTTTACTCGCACGCGACTTGCCCTGTTTGCAGATCTAATCTCACGGCGA 536
Query 630 AATCG-AATAAACCCGGCGATGAAGACGACGGTGTTCCGTTAGCAGCGATGAGAGACCAC 688
||||| || ||| || |||| |||||||||||||||||| |||||||||||||||| |||
Sbjct 537 AATCGGAA-AAATCCTGCGAAGAAGACGACGGTGTTCCGATAGCAGCGATGAGAGATCAC 595
Query 689 GTCGTGGTTGATATTGAGACCGTTGAGGTAGCGAAAAGCCACCACCGACGGTTGAGTTCT 748
|||||| ||||||||||||||||||||| |||||| ||||||||||||||| ||||||||
Sbjct 596 GTCGTGATTGATATTGAGACCGTTGAGGCAGCGAAGAGCCACCACCGACGGCTGAGTTCT 655
Query 749 GAAATCTCCGGTAAGTTTCCGAGATCGAATTCGACGGGTCATTCGATGGATCGATTCAGT 808
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 656 GAAATCTCCGGTAAGTTTCCGAGATCGAATTCAACGGGTCATTCGATGGATCGATTCAGT 715
Query 809 GACGGCACAGAGAGGTTTACTCTGCGGTTACCAGATGATGTAAAGATGCGATTAATGGCG 868
|||||||| ||||||||||||||||||||||| |||||||| |||| || | ||||||||
Sbjct 716 GACGGCACTGAGAGGTTTACTCTGCGGTTACCGGATGATGTGAAGAGGCAAATAATGGCG 775
Query 869 GTGAAAGGACGTAGGTTGAAACGAACGAGAAGCTTTGACGTTGATTTGACGGCGGA-ACA 927
|| |||||||||||| ||||||||||||||||||||||| |||||||||||||||| | |
Sbjct 776 GTTAAAGGACGTAGGCTGAAACGAACGAGAAGCTTTGACATTGATTTGACGGCGGAGA-A 834
Query 928 CTATTGCCGGAGCGGTGAGGAAAGCAGTAACAC-GATCGGGTCTGG-TGCGAAGTCGGGT 985
||||||||||||||||||||||||||| ||| | |||||| ||| || |||| | | |
Sbjct 835 GTATTGCCGGAGCGGTGAGGAAAGCAGTTACAAAG-TCGGGT-TGGGTGAGAAGGCAGAT 892
Query 986 CGGGTCAACTGGCCGGATCGATGGGGTTTGACTTTGTTCGTTTCGAAGTCAAACTCGGGT 1045
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 893 CGGGTCAACTGGCCGGATCGATGGGGTTTGACTTTGTTCGTTCCAAAGTCAAACTCGGGT 952
Query 1046 TCCGTTAGATCACAGAAATCTAACGGTGAACCGTTGAAATGAACGACGTTATATTTTGCC 1105
|||||||||||||||||| ||||||||||||| ||||||||| | |||||||||| ||||
Sbjct 953 TCCGTTAGATCACAGAAAGCTAACGGTGAACCATTGAAATGACCCACGTTATATTCTGCC 1012
Query 1106 GT 1107
||
Sbjct 1013 GT 1014
> Ahg888235 jgi|Araly1|888235|Al_scaffold_0007_221
Length=753
Score = 822 bits (445), Expect = 0.0
Identities = 552/603 (92%), Gaps = 10/603 (2%)
Strand=Plus/Plus
Query 119 ATGACACGCGTCGAGTGTTTTAATCC-TCACCGTTGGATTA---TCTTACACGTGGCAAT 174
||||||||||||||||||||||| || |||| ||||||||| |||| |||||||||||
Sbjct 1 ATGACACGCGTCGAGTGTTTTAA-CCGTCACGGTTGGATTATCTTCTTCCACGTGGCAAT 59
Query 175 CATCATACAGAGCAAAGCCAATGCCCAATCTTTCTCACCGAGTCCACCCGACTTGCAAAC 234
|||| ||||||||||||||||||||||||| ||||||||||| || || || |||||| |
Sbjct 60 CATCCTACAGAGCAAAGCCAATGCCCAATCATTCTCACCGAGGCCGCCTGATTTGCAACC 119
Query 235 --G-GGTCACACTCCGTCGAAGACCACCGTCTTCGCCGTTCTCGTAACCCTCTTCTTCCT 291
| ||||||||||||||||||||||| ||||| |||||||||| |||||||||||||
Sbjct 120 GGGTGGTCACACTCCGTCGAAGACCACGGTCTTTACCGTTCTCGTCGCCCTCTTCTTCCT 179
Query 292 CACCGGATTACTCTCCGTCTATATTCGCCATTGCGCTCGCTCTAATCCTGATTCCTCCAC 351
|||||||||||||||||||||||| ||||||||| |||||||||| || |||||||||||
Sbjct 180 CACCGGATTACTCTCCGTCTATATCCGCCATTGCACTCGCTCTAACCCCGATTCCTCCAC 239
Query 352 CAGATACTTCCGCAACCGAGCTAACGACGGCAGTTCACGGCGAGGCGGTCTTGACAACGC 411
||||||||||||| ||| ||||||||| | ||||||||||||||| |||||||||||
Sbjct 240 CAGATACTTCCGCCGCCGCGCTAACGACAACTTTTCACGGCGAGGCGGACTTGACAACGC 299
Query 412 CGTCGTCGAAAGCTTCCCTGTTTTCGCTTACTCCTCTGTTAAAGAATCCAAAATCGGATC 471
|||||||||||||||||||||||||||||||||| | ||||||||||| || ||||||||
Sbjct 300 CGTCGTCGAAAGCTTCCCTGTTTTCGCTTACTCCACCGTTAAAGAATCGAAGATCGGATC 359
Query 472 CAAGGATTTAGAATGTGCGATTTGTCTCAACGAATTAGAAGATCATGAAACAGTGCGATT 531
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 360 CAAGGATTTAGAATGTGCGATTTGTCTCAACGAATTGGAAGATCATGAAACAGTGCGATT 419
Query 532 GCTTCCGATTTGTAACCATTTGTTCCATATCGATTGTATCGATACTTGGCTTTACTCGCA 591
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 420 GCTTCCGATTTGTAACCATTTGTTCCATATCGATTGTATCGACGCTTGGCTTTACTCGCA 479
Query 592 CGCAACTTGCCCTGTTTGCAGATCTAATCTCACCGCGAAATCG-AATAAACCCGGCGATG 650
||| ||||||||||||||||||||||||||||| ||||||||| || ||| || |||| |
Sbjct 480 CGCGACTTGCCCTGTTTGCAGATCTAATCTCACGGCGAAATCGGAA-AAATCCTGCGAAG 538
Query 651 AAGACGACGGTGTTCCGTTAGCAGCGATGAGAGACCACGTCGTGGTTGATATTGAGACCG 710
||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||
Sbjct 539 AAGACGACGGTGTTCCGATAGCAGCGATGAGAGATCACGTCGTGATTGATATTGAGACCG 598
Query 711 TTG 713
|||
Sbjct 599 TTG 601
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50779725444
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5