BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G40080.1
Length=1330
Score E
Sequences producing significant alignments: (Bits) Value
Ahg353021 jgi|Araly1|353021|fgenesh1_pg.C_scaffold_7000194 1696 0.0
> Ahg353021 jgi|Araly1|353021|fgenesh1_pg.C_scaffold_7000194
Length=1095
Score = 1696 bits (918), Expect = 0.0
Identities = 1030/1085 (95%), Gaps = 4/1085 (0%)
Strand=Plus/Plus
Query 58 ATGGGAAGAATAACAAGTTTTGCAGATCTAATAGGTA-GAATCAAAGACAAAGCTTCTCA 116
||||||||||| || ||||||||||||||||| |||| | ||||||||||||||||||||
Sbjct 1 ATGGGAAGAATTACGAGTTTTGCAGATCTAATGGGTATG-ATCAAAGACAAAGCTTCTCA 59
Query 117 AAGCAAAGCTGCTTTAGTATCATCAAACACTAAAAGCAAAACTCTCTCTTTCCATCTCTC 176
| |||||||||||||||| |||||| ||||||||||||||||| | ||||||||||||||
Sbjct 60 AGGCAAAGCTGCTTTAGTTTCATCACACACTAAAAGCAAAACTGTTTCTTTCCATCTCTC 119
Query 177 TGTCCTCCGTGCCACTACTCATGACCCTTCAACGCCGCCGGGGAATCGTCACCTCGCCGT 236
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 120 TGTCCTCCGTGCCACTACTCATGACCCTTCAACGCCGCCGGGAAATCGTCACCTCGCTGT 179
Query 237 TATTCTCTCCGCCGGTACTGGCTCACGAGCCACCGCTTCTTCAGCTGTCGAATCCATAAT 296
| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 180 TCTTCTCTCCGCCGGTACTGGCTCACGAGCCACCGCTGCTTCAGCTGTCGAATCTATAAT 239
Query 297 GGAACGTCTTCACACCACCGGAGATGCTTGCGTAGCTCTCAAGTCTTTGATCATTATCCA 356
||||||||||||||| | | |||||||||||||||||||||| |||||||||||||||||
Sbjct 240 GGAACGTCTTCACACAAGCAGAGATGCTTGCGTAGCTCTCAAATCTTTGATCATTATCCA 299
Query 357 TCACATCGTCAAACACGGTCGTTTCATCCTCCAAGATCAGCTCTCTGTATTTCCAGCTTC 416
||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||
Sbjct 300 TCACATCGTCAAACACGGTCGTTTCATACTCCAAGATCAGCTCTCTGTTTTTCCGGCTTC 359
Query 417 CGGTGGTCGGAATTATCTGAAACTTTCTGCTTTTAGAGATGAGAAATCTCCTTTGATGTG 476
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 360 CGGTGGCCGGAATTATCTGAAACTTTCTGGTTTTAGAGATGAGAAATCTCCTTTGATGTG 419
Query 477 GGAGCTTTCTTCTTGGGTCCGATGGTACGCTTTATATCTTGAGCATCTATTATCAACTTC 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GGAGCTTTCTTCTTGGGTCCGATGGTACGCTTTATATCTTGAGCATCTATTATCAACTTC 479
Query 537 AAGAATCATGGGATTTTTCATATCTTCAACATCGAGTACAATTCACAAAGAGGAATACGA 596
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 480 AAGAATCATGGGATTTTTCATATCTTCAACATCGAGCACAATTCACAAAGAGGAATACGA 539
Query 597 AGAAATGGTTTCTTCTCTTACCAACTCTGATCT-GCTTCGTGAGATCGATGCTCTCGTTG 655
||||||||||||||||||||||||| |||| || |||||||||||||||||| |||||||
Sbjct 540 AGAAATGGTTTCTTCTCTTACCAACGCTGA-CTTGCTTCGTGAGATCGATGCGCTCGTTG 598
Query 656 GTCTACTAGAAGAAGCATGTAAAATTCCGGATCTACCCTTCTCCGGTGGGAAATCCCTCG 715
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 599 GTCTACTAGAAGAAGCATGTAAAATTCCGGATCTACCCTTCTCCGGTGGCAAATCTCTTG 658
Query 716 CAGACAAAATCACTCAGTTGGTAGGAGAAGACTACGTGTCTTCGATCAACGAGCTTTACA 775
||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 659 CAGACAAAATCACCCATTTGGTCGGAGAAGACTACGTGTCTTCGATCAACGAGCTTTACA 718
Query 776 CGAGATTCAACGAGTTTAAAGAACGATCCAACACTTTGAGCTTTGGAGATACGATCGAGC 835
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 719 CGAGACTCAACGAGTTTAAAGAACGATCCAACACTTTGAGCTTTGGAGATATGATTGAGC 778
Query 836 TTGTCTGTGCTTTGAAGCGGCTCGAGAGTTGTAAAGAGAGGTTGTCTGAAATCTGCCATG 895
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 779 TTGTCTGTGCTTTGAAGCGGCTCGAGAGTTGTAAAGAGAGATTGTCTGAAATCTGCCATG 838
Query 896 GGAATTGGAAGAGAGGTTGGATTGATGGGTTCTGGGGTTTGGTTCTTGAGGTCAAGGGTA 955
|||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 839 GGAACTGGAAGAGAGGTTGGATCGATGGGTTCTGGGGTTTGGTTCTGGAGGTCAAGGGTA 898
Query 956 TTATTGGTAATTTAGAGGATAATTATGGGCAGATTGAGAAATCGATTGTTGGGTTTGGGA 1015
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 899 TAATTGGTAATTTAGAGGATAACTATGGGCAGATTGAGAAATCGATTGTTGGGTTTGGGA 958
Query 1016 AGAGGGATAAAGGATACGAATCGGCTCGGTTTACTGATCGGTTAATTATCGGTTATAGTA 1075
||| || ||| |||||||||||||||||||||| ||||| ||||||||||||||| ||
Sbjct 959 CGAGAGAAAAACGATACGAATCGGCTCGGTTTACCGATCGATTAATTATCGGTTATGGTG 1018
Query 1076 ATCCTGTTCGGTTTTCTTCGGGTAGATTTTCGAATGTTGATCGGTTTAATTTTCCGGTTT 1135
|| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1019 ATGCTGTTCGGTTTTCTTCAGGTAGATTTTCGAATGTTGATCGGTTTAATTTCCCGGTTT 1078
Query 1136 CTGGT 1140
|||||
Sbjct 1079 CTGGT 1083
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49750406685
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5