BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G40090.1 Length=748 Score E Sequences producing significant alignments: (Bits) Value Ahg944019 jgi|Araly1|944019|scaffold_700248.1 640 0.0 > Ahg944019 jgi|Araly1|944019|scaffold_700248.1 Length=473 Score = 640 bits (346), Expect = 0.0 Identities = 432/472 (92%), Gaps = 11/472 (2%) Strand=Plus/Plus Query 62 AGACATTGAAACTGAGAGAAATGGCTCTTAAGACATTGCAAGCTCTGATCTTTCTTGGTC 121 |||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||| Sbjct 1 AGACATTGAAACAGAGAGAGATGGCTCTTAAGACATTGCAAGCTTTGATCTTTCTTGGTC 60 Query 122 TATTTGCCGCCTCATGTCTAGCTCAAGCTCCGGCTCCGGCACCTATCACGTTTCTCCCTC 181 |||||||| |||||||||| ||||||||||||||||| ||||| |||||| ||||||||| Sbjct 61 TATTTGCCACCTCATGTCTCGCTCAAGCTCCGGCTCCTGCACCCATCACGCTTCTCCCTC 120 Query 182 CGGTAGAGTCTCCTTCTCCAGTTG-TTACACCAACTGCAGAACCACCGGCTCCCG-TTGC 239 ||||||||||||||||||| || | | ||||||||||||| |||||| || ||| |||| Sbjct 121 CGGTAGAGTCTCCTTCTCCGGTAGAGT-CACCAACTGCAGAGCCACCGTCT-CCGTTTGC 178 Query 240 TTCACCCCCTATTCCAG-CCAACGAACCCACTCCGGTTCCAACAACTCCACCAACCGTCT 298 ||||||||| |||||| | || ||||||||||||||||||||||||||||||||||||| Sbjct 179 TTCACCCCCGGTTCCAGTCGAA-GAACCCACTCCGGTTCCAACAACTCCACCAACCGTCT 237 Query 299 CACCCCCGACCACGTCGCCCACAACTTCCCCTGTCGCTTCTCCTCCTAAACCATATGCTT 358 ||||||||||||||||||| |||||||||||||||||||||||||||||| || ||| || Sbjct 238 CACCCCCGACCACGTCGCCTACAACTTCCCCTGTCGCTTCTCCTCCTAAAACACATGGTT 297 Query 359 TGGCTCCAGGCCCATCAGGTCCAACACCAGCTCCGGCCCCCGCTCCTAGAGCAGACGGGC 418 |||||||||| ||||||||||||||||||||||| || || ||||||||||||||||| | Sbjct 298 TGGCTCCAGGGCCATCAGGTCCAACACCAGCTCCTGCTCCGGCTCCTAGAGCAGACGGAC 357 Query 419 CGGTAGCTGACTCAGCATTGACTAACAAAGCTTTCCTTGTTAGCACAG-TCATTGCCGGA 477 |||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||| Sbjct 358 CGGTAGCTGACTCAGCATTGACTAACAAAGCTTTCCTTGTGAGCAC-GCTCATTGCCGGA 416 Query 478 GCCTTGTACGCCGT--TTT-GGCTTAAAGAGTGCCTTGCGTATTACTCTATC 526 |||||||||||||| ||| |||||| || ||||| |||||||||||||||| Sbjct 417 GCCTTGTACGCCGTCGTTTTGGCTTAGAGGGTGCCCTGCGTATTACTCTATC 468 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27562868991 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5