BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G40090.1
Length=748
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944019 jgi|Araly1|944019|scaffold_700248.1 640 0.0
> Ahg944019 jgi|Araly1|944019|scaffold_700248.1
Length=473
Score = 640 bits (346), Expect = 0.0
Identities = 432/472 (92%), Gaps = 11/472 (2%)
Strand=Plus/Plus
Query 62 AGACATTGAAACTGAGAGAAATGGCTCTTAAGACATTGCAAGCTCTGATCTTTCTTGGTC 121
|||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 1 AGACATTGAAACAGAGAGAGATGGCTCTTAAGACATTGCAAGCTTTGATCTTTCTTGGTC 60
Query 122 TATTTGCCGCCTCATGTCTAGCTCAAGCTCCGGCTCCGGCACCTATCACGTTTCTCCCTC 181
|||||||| |||||||||| ||||||||||||||||| ||||| |||||| |||||||||
Sbjct 61 TATTTGCCACCTCATGTCTCGCTCAAGCTCCGGCTCCTGCACCCATCACGCTTCTCCCTC 120
Query 182 CGGTAGAGTCTCCTTCTCCAGTTG-TTACACCAACTGCAGAACCACCGGCTCCCG-TTGC 239
||||||||||||||||||| || | | ||||||||||||| |||||| || ||| ||||
Sbjct 121 CGGTAGAGTCTCCTTCTCCGGTAGAGT-CACCAACTGCAGAGCCACCGTCT-CCGTTTGC 178
Query 240 TTCACCCCCTATTCCAG-CCAACGAACCCACTCCGGTTCCAACAACTCCACCAACCGTCT 298
||||||||| |||||| | || |||||||||||||||||||||||||||||||||||||
Sbjct 179 TTCACCCCCGGTTCCAGTCGAA-GAACCCACTCCGGTTCCAACAACTCCACCAACCGTCT 237
Query 299 CACCCCCGACCACGTCGCCCACAACTTCCCCTGTCGCTTCTCCTCCTAAACCATATGCTT 358
||||||||||||||||||| |||||||||||||||||||||||||||||| || ||| ||
Sbjct 238 CACCCCCGACCACGTCGCCTACAACTTCCCCTGTCGCTTCTCCTCCTAAAACACATGGTT 297
Query 359 TGGCTCCAGGCCCATCAGGTCCAACACCAGCTCCGGCCCCCGCTCCTAGAGCAGACGGGC 418
|||||||||| ||||||||||||||||||||||| || || ||||||||||||||||| |
Sbjct 298 TGGCTCCAGGGCCATCAGGTCCAACACCAGCTCCTGCTCCGGCTCCTAGAGCAGACGGAC 357
Query 419 CGGTAGCTGACTCAGCATTGACTAACAAAGCTTTCCTTGTTAGCACAG-TCATTGCCGGA 477
|||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||
Sbjct 358 CGGTAGCTGACTCAGCATTGACTAACAAAGCTTTCCTTGTGAGCAC-GCTCATTGCCGGA 416
Query 478 GCCTTGTACGCCGT--TTT-GGCTTAAAGAGTGCCTTGCGTATTACTCTATC 526
|||||||||||||| ||| |||||| || ||||| ||||||||||||||||
Sbjct 417 GCCTTGTACGCCGTCGTTTTGGCTTAGAGGGTGCCCTGCGTATTACTCTATC 468
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27562868991
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5