BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01030.1
Length=2728
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486976 jgi|Araly1|486976|fgenesh2_kg.6__110__AT5G01030.1 3321 0.0
> Ahg486976 jgi|Araly1|486976|fgenesh2_kg.6__110__AT5G01030.1
Length=2695
Score = 3321 bits (1798), Expect = 0.0
Identities = 2431/2713 (90%), Gaps = 137/2713 (5%)
Strand=Plus/Plus
Query 2 TTCGATTCCTTACTAAGGCTTTCTCGATTTACGTTAATCTG-AGAAGAGATTGGGTTTAG 60
||||||| |||||||| |||||||||||| ||||||||| | |||||||||| |||||||
Sbjct 1 TTCGATTGCTTACTAAAGCTTTCTCGATTAACGTTAATCAGAAGAAGAGATTTGGTTTAG 60
Query 61 TGAATCTTGATTTCCGTGGTTGTGTTTTTCGATTTTGCTTCTACTCCACGTTCTTGTTGT 120
|||||||||||||||||||||||| ||||||||||||||||||||||| | |||||
Sbjct 61 TGAATCTTGATTTCCGTGGTTGTGATTTTCGATTTTGCTTCTACTCCA----C--GTTGT 114
Query 121 TGTTCCCTTTTAGCTCCAGATTATGCTTTTCTTTTTGTTTTCTTCTCTTCGACGATATCT 180
|||| ||||||||||||||||| | | |||||||||||||||||||||||||||||
Sbjct 115 TGTT---TTTTAGCTCCAGATTATAC---T-TTTTTGTTTTCTTCTCTTCGACGATATCT 167
Query 181 GCCACCAACTCG-A-GTCTCA-GTTTAATGAAATGTTTGT-G-GA--TTTTTGGTAAATA 233
|||||||||||| | || | | | || | | |||| | | || ||||| | | ||
Sbjct 168 GCCACCAACTCGAAGGT-T-AGGATT-A-G---GGTTTCTCGAGATGTTTTTAG-AGAT- 218
Query 234 GTACT--AATGGGGCTAAAGAACATCAGAGATGGCAGAAAAGGAGGGTAAAGCAAGTGGC 291
|| || || | || |||||||||| ||||||| ||||||||||||| |||||||||||
Sbjct 219 GTTCTGAAACAGAGCCAAAGAACATCGGAGATGGTAGAAAAGGAGGGTCAAGCAAGTGGC 278
Query 292 ACAGACAATGACAATCGGGTGAAAACGAAACGTTCAAGTCATAGTCGTCGAAAGGAATGT 351
|| ||||||| || ||||| | ||||||||||||||| |||||||||| ||||||||||
Sbjct 279 ACTGACAATGTGAACCGGGTCAGAACGAAACGTTCAAGCCATAGTCGTCAAAAGGAATGT 338
Query 352 GTCAATAAGAGTTTGGAACATAATGATGAGCTTGTGAAATATATGTCCAAGTTGCCAGGT 411
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 339 GTCAATGAGAGTTTGGAACATAATGATGAGCTTGTGAAATATATGTCCAAGTTGCCAGGT 398
Query 412 TATCTCCAACGTATAGAGAGAGGTGAAGAAAGCGTTCATCAAAGTAATGTTTTGAATGTT 471
||||||||||||||||| |||||||||||||| | | ||| ||||||||||||||||||
Sbjct 399 TATCTCCAACGTATAGATAGAGGTGAAGAAAGTG-T--TCAGAGTAATGTTTTGAATGTT 455
Query 472 GGAGTCTTGGATTGGGAAAGTCTACAGAGATGGAAGCATGGTCGAGCAAAAGGCGGTGAA 531
|| ||||||||||||||| ||||| ||| |||||||||||| ||||| ||||||||||||
Sbjct 456 GGGGTCTTGGATTGGGAACGTCTAGAGAAATGGAAGCATGGCCGAGCCAAAGGCGGTGAA 515
Query 532 ATATCAGGAAGAA-GTGAGAGAAAAGTGTCTACTATTGCTACTACTTCTACTTCAGGAGT 590
| |||||||| || ||||||||||||||||||||||| |||||||||||||
Sbjct 516 AGATCAGGAA-AATCTGAGAGAAAAGTGTCTACTATTG---------CTACTTCAGGAGT 565
Query 591 AGTAGTTCCCAATGACTCGGCTAATAGGTGTAAGATTGATGACCAAG-TGCATACTTGTT 649
| |||||||||||||| ||||||||||| ||||||||||||| || ||| ||||||||
Sbjct 566 --T-GTTCCCAATGACTCAGCTAATAGGTGCAAGATTGATGACC-AGTTGCCTACTTGTT 621
Query 650 CGAATCTCGGTAAAGTTAAAGCTTCCCGGGATCTTCAATATTCTC-T-----AG--A-A- 699
|||||||||||||||||||||||||||||||||||||| |||||| | || | |
Sbjct 622 CGAATCTCGGTAAAGTTAAAGCTTCCCGGGATCTTCAACATTCTCTTCACGGAGTTAGAT 681
Query 700 -C-C------T-C--AGCTGGCTTCTAGGGATTCATTAAATAAGCAGGAAATAGCAACTT 748
| | | | || |||||||||||||||||||||||||||||||| |||||||||
Sbjct 682 GCACTTTTGATCCTGAGTTGGCTTCTAGGGATTCATTAAATAAGCAGGAACTAGCAACTT 741
Query 749 GTAGCTATAAGTCCTCTGGTAGAGATCACAAAGGAGTAGAACCGAGGAAGAGCAGAAGAA 808
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 742 GTAGCTATAAGTCCTCTGGTAGAGATCACAAAGGAGTTGAACCAAGGAAGAGCAGAAGAA 801
Query 809 CGCATTCAAACCGGGAATCCACTACAGGTTTATCGTCAGAAATGGGAAACTCT--GCGG- 865
||||||||||||||||||| ||| ||||||||| ||||||||||||||||||| | ||
Sbjct 802 CGCATTCAAACCGGGAATCAACTTCAGGTTTATTGTCAGAAATGGGAAACTCTGGGGGGT 861
Query 866 ----GG---TC-------AC-T--TT-TCCGGGATAAAGAGACTCAGAAGAGAGCAGGGG 907
|| || || | || |||||||||| ||||||||||||||||||||||
Sbjct 862 CACTGGTCATCAAGAGAAACTTAGTTGTCCGGGATAAGGAGACTCAGAAGAGAGCAGGGG 921
Query 908 AGATACATGCAAAGGAAGCAAGAGAAAGAGCTAAAGAATGTGTTGAGAAGTTAGATGG-G 966
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 922 AGATACATACAAAAGAAGCAAGAGAAAGAGCTAAAGAATGTGTTGAGAAGTTAGATGGCG 981
Query 967 GATGAGAAGATCATTGGCGATTCGGAAGCTGGTCTTACTTCTGAAAAGCAGGAGTTCAGC 1026
| ||||||||||||| |||||||| ||||||||| ||||||||||||||||||||| |||
Sbjct 982 G-TGAGAAGATCATTTGCGATTCGAAAGCTGGTCATACTTCTGAAAAGCAGGAGTTGAGC 1040
Query 1027 AACATTTTTCTCCTTCGATCAAGAAAACAGTCCCGAAGCACTCTTTCCGGTGAGCCTCAA 1086
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1041 AACATTTTTCTCCTTCGATCAAGAAAACAGTCCCGAGGCACTCTTTCCGGTGAGCCCCAA 1100
Query 1087 ATCTCAAGGGAGGTTAACCGCTCTCTAGACTTTTCCGACGGAATCAATAGCTCTTTCGGA 1146
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 1101 ATCTCTAGGGAGGTTAACCGCTCTCTAGACTTTTCCGACAGAATCAATAGCTCTTTAGGA 1160
Query 1147 TTGAGATCTCAAATTCCTAGTTCCTGTCCACTCTCTTTCGACTTAGAGAGAGATTCTGAA 1206
||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1161 TTGAGCTCTCAAACTCCTCGTTCCTGTCCACTCTCTTTCGACTTAGAGAGAGATTCTGAA 1220
Query 1207 GATATGATGTTGCCTCTTGGTACTGATCTTTCTGGT-AAAA-G-A------GGTGGGAAA 1257
||||||||||||||||||||||||||| | |||||| |||| | | |||||||||
Sbjct 1221 GATATGATGTTGCCTCTTGGTACTGATATATCTGGTAAAAAGGAACGGTTTGGTGGGAAA 1280
Query 1258 AGGCATTCAAAGACAACTTCAAGGATATTTGATCGAGAATTTCCTGAAGATGAATCCAGA 1317
||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1281 AGGCATTCAAAGACAGCTTCAAGGATATTTGATCTAGAATTTCCTGAAGATGAGTCCAGA 1340
Query 1318 AAGGAGAGACACCCTTCACCAAGCAAGCGATTTAGTTTTAGTTTTGGTCGTCTCAGCCGA 1377
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1341 AAGGAGAGACACCCTTCACCGAGCAAGCGGTTTAGTTTTAGTTTTGGTCGTCTCAGCCGA 1400
Query 1378 AATTTCAGCCTGAAAGATATTTCAGCCGGCCAACCTTTGAGTTCTTCTGAGGATACCATT 1437
| ||||||| | ||||| |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1401 AGTTTCAGCGTAAAAGAGATTTCAGCTGGCCAACCTTTGAGTTCTTCTGAGGATACTATC 1460
Query 1438 ATGTCTGGTTCTATGAGATTTGATGGTTCAGTTTGTCCATCTCAGTCAAGTAACCCGGAG 1497
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1461 AAGTCTGGTTCTATGAGATTTGATGGTTCAGTTTGTCCATCTCAGTCAAGTAATCCGGAG 1520
Query 1498 AACCAGAACACTCATTGCAGATCTCGAGTTAGCCCTCTAAGGCGGTTTCTTGACCCTTTA 1557
||| | ||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1521 AAC-A---CAC--ATTGCAGATCTCGAGTTAGCCCTCTAAGACGGTTTCTTGACCCTTTA 1574
Query 1558 CTGAAACCAAAAGCCTCTGAAAGTGTTCTTCCATCAAAAGCAAGATCAAGTTCTTCCAAT 1617
|||||||| |||| |||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1575 CTGAAACCCAAAGGCTCTGAAAATGTTCTTCCATCAAAAGCAAGATCAAGTTCTTTCAAT 1634
Query 1618 CCAAAGCCAATAACCAACAGCAACGTACCACTTCAAGATGAAAAGAAGCAGGATGCATCG 1677
||| |||||| |||||||||||||||||||||||||| ||||||||||||||| ||| |
Sbjct 1635 CCAGAGCCAACAACCAACAGCAACGTACCACTTCAAGGCGAAAAGAAGCAGGATACATTG 1694
Query 1678 AGAACCCTAGCTATTTTTCAGCTCACAATCAGAAATGGCATCCCTTTGTTTCAATTTGTG 1737
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1695 AGAACCCGAGCTATTTTTCAGCTCACAATCAGAAATGGCATCCCTCTGTTTCAATTTGTG 1754
Query 1738 GTCGATGATAACAG---CAGCAGCAGCAGGAGCATTCTCGGGGCTACAATGAAAAGCTCA 1794
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 1755 GTCGATGATAACAATAACAGCAGCAGCAGGAGCATTCTCGGGGCTACAATGAAGAGCTCG 1814
Query 1795 GATTCATCGTTCAAAGATGATTCTGTTCAGTACTGCACATTCTACTCTGTTAATGAAGTC 1854
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1815 GATTCATCGCTCAAAGATGATTCTGTTCAGTACTGCACATTCTACTCTGTTAATGAGGTC 1874
Query 1855 aaaaagaaaaaaaGTGGAAGCTGGCTAATCCATGGACACAGAGAGAAACATTGCGGGTTC 1914
|||||||| ||||| ||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1875 AAAAAGAAGAAAAGCGGAAGCTGGCTAATCCATGGACACAAAGAGAAACACTGCGGGTTC 1934
Query 1915 GTCTACAACATAATCGGTCAAATGCAGTTGGGAAACTCAATGAGCGTAGATATATCAGAG 1974
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1935 GTCTACAATGTAATCGGTCAAATGCAGTTGGGAAACTCAATGAACGTAGATATATCAGAG 1994
Query 1975 CAGAAATCT----T--T-------G--ATCACAGAGTCAGTTCTGTTTGACGAATCAGAG 2019
||||||||| | | | |||||||| ||||||||||||||||| ||||||
Sbjct 1995 CAGAAATCTGAAATCATCTCTCCTGTGATCACAGAATCAGTTCTGTTTGACGAGTCAGAG 2054
Query 2020 CAAGTAAAAGGGAGGAAGGAGGTTGCAGCTGTAGTGATCAAGAAGAAGCCTGTCGAAGGA 2079
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2055 CAAGTAAAAGGGAGGAGGGAGGTTGCAGCTGTAGTGATCAAGAAGAAGCCGGTCGAAGGA 2114
Query 2080 AGCTATACCAGCTTCGA-GGAAACTAGTGTGATAATTCCAGGCGGCGTTCACAGCTTCCC 2138
|||| ||||||| || | |||||| |||||||| ||||| |||| |||||||||||||||
Sbjct 2115 AGCTGTACCAGCCTC-ATGGAAACGAGTGTGATCATTCCTGGCGACGTTCACAGCTTCCC 2173
Query 2139 CGAGAAAGGAGCACCGTCGCCATTGATTAGCCGGTGGAGGTCTGGAGGGTTATGCGACTG 2198
|||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 2174 GGAGAAAGGAGCACCATCGCCATTGATTAGCCGGTGGAGATCTGAAGGGTTATGCGACTG 2233
Query 2199 CGGTGGCTGGGATGTTGGATGTAAACTACATGTCCTCTCCAACAAAACAGTCCTCCATAA 2258
||||||||||||||||||||||||||| | ||||||||||||||||| ||||| |||| |
Sbjct 2234 CGGTGGCTGGGATGTTGGATGTAAACTCCGTGTCCTCTCCAACAAAATAGTCCCCCATGA 2293
Query 2259 ATTCAACCAAAGCTTCACACTTTTCGATCAGGAAGTGA-GTGAACAAGACTCGAGTCCAG 2317
||||||||||||||||||||||||||||||||||| || |||||||||||||| |||| |
Sbjct 2294 ATTCAACCAAAGCTTCACACTTTTCGATCAGGAAG-GAAGTGAACAAGACTCGGGTCCGG 2352
Query 2318 CTTTGGCGATGACAGAGCTGAAGACAGGGATCTATAGGGTGGAGTTTGGTTCGTTTGTTT 2377
|||| | ||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2353 TTTTGACTATGACGGAGCTGAAGACAGGGATCTATAGGGTGGAGTTTGGTTCGTCTGTTT 2412
Query 2378 CACCGTTACAAGCGTTTTTTGTGTGTGTGACGGTACTAACATGTGCTTCCAAGGCAAAGA 2437
| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2413 CGCCGTTACAAGCCTTTTTTGTGTGTGTGACGGTACTAACATGTGCTTCCGAGGCAAAGA 2472
Query 2438 CCACCGGAAAATCTTCTTCTCCTATGGCTCCGCCGCTATCTCCCGTTGGTAGAGTCTAAA 2497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2473 CCACCGGAAAATCTTCTTCTCCTATGGCTCCGCCGCTATCTCCCGTTGGTAGAGTCTAAA 2532
Query 2498 CTCAGGACACAGATAGAGAGTATCTAATGATCGTTAT--CTTTCTTATAAATTCCTAACG 2555
| |||||||||| ||||| ||||||||||||||| | ||||| |||||||||| ||||
Sbjct 2533 CGCAGGACACAGGTAGAG--TATCTAATGATCGTTTTTTCTTTCATATAAATTCCCAACG 2590
Query 2556 TTGTATGCTCTTGTGTTGTGTCCAAAAAGACTTAAA-TCATAAGAGTATACACTACTATT 2614
|||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 2591 TTGTATACTCTTGTGTTGTGTCCAAAAAGACTTAAAATCATAAGAGCATACACTACTATT 2650
Query 2615 AAAGTTACACTAT 2627
||||| |||||||
Sbjct 2651 AAAGTCACACTAT 2663
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102919841990
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5