BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01060.1
Length=1500
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486973 jgi|Araly1|486973|fgenesh2_kg.6__107__AT5G01060.1 2418 0.0
Ahg317726 jgi|Araly1|317726|fgenesh1_pm.C_scaffold_3000742 1146 0.0
Ahg333388 jgi|Araly1|333388|fgenesh1_pm.C_scaffold_710000001 869 0.0
Ahg921006 jgi|Araly1|921006|scaffold_102287.1 291 1e-77
> Ahg486973 jgi|Araly1|486973|fgenesh2_kg.6__107__AT5G01060.1
Length=1497
Score = 2418 bits (1309), Expect = 0.0
Identities = 1438/1501 (96%), Gaps = 5/1501 (0%)
Strand=Plus/Plus
Query 1 ATGGGATGCATTTGCTTCAAGTCTTGGCGCCGATCATCTTCTTCACCGTCGATTACGTCA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGGATGCATTTGCTTCAAGTCTTGGCGCCGATCATCTTCTTCACCGTCGATTACATCA 60
Query 61 ACGGTCATAGATGATCTCGAAAACGTCAGAGAGTACGATGCCGACGACGACGGAGGACAT 120
|||||||| |||||||| ||||||||| |||| |||||| |||||||||||||||||||
Sbjct 61 ACGGTCATTGATGATCTAGAAAACGTC--AGAG-ACGATGTCGACGACGACGGAGGACAT 117
Query 121 TATCCGTTGATTTTCCGTGAGTTCAGTTTAGAACAGCTGAGAATCGCCACCGACGGTTTC 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 118 TATCCGTTGATTTTCCGTGAGTTCAGTTTAGAGCAGCTGAGAATCGCCACCGACGGTTTC 177
Query 181 TCCGCCGGAAACATCGTATCGGAGCACAACGATTCGGTACCAAACATCGTCTACAAAGGA 240
|||||||||||| |||| ||||||||||| ||||| |||||||||||||||||||| |||
Sbjct 178 TCCGCCGGAAACGTCGTCTCGGAGCACAATGATTCCGTACCAAACATCGTCTACAAGGGA 237
Query 241 AAACTCGGCGATGGTCGTCGCATCGCCGTCAAACGGTTTCAAAGACTTTCTTGGCCTGAT 300
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 AAACTCGGAGACGGTCGTCGCATCGCCGTCAAACGGTTTCAAAGACTTTCTTGGCCTGAT 297
Query 301 CCTTTCGAATTCATCAATGAAGCACAAGCTGTTGGGAGATTGAGGAGTGAACATATGGCG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 CCTTTCGAATTCATCAATGAAGCACAAGCTGTTGGGAGATTGAGGAGTGAACATATGGCG 357
Query 361 AATTTGATCGGTTGTTGTTGTGATGACAACGAGAGATTACTTGTTGCTGAGTATATGCCT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 AATTTGATCGGTTGTTGTTGTGATGACAACGAGAGATTACTTGTTGCTGAGTATATGCCT 417
Query 421 AATGGAACATTAGCAAAACATCTTTTTCACTGGGAGAAAAGACCCATGAAATGGGAAATG 480
||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 418 AATGGAACACTAGCAAAGCATCTTTTTCACTGGGAGAAAAGACCGATGAAATGGGAAATG 477
Query 481 AGGTTGAAAGTTGCTCTGCATACTGCAAGAGCTTTGGAGTATTGTAATGATAAAGGAATT 540
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 478 AGGTTGAAAGTTGCTCTGCATACCGCAAGAGCTTTGGAGTATTGTAATGATAAAGGAATA 537
Query 541 GATTTATACCATGATCTTAATCCTTACAGGATTATGTTTGATAAGACAGGGATTCCTAAG 600
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 538 GATTTATACCATGATCTTAATCCTTACAGGATTATGTTTGATAAGACGGGGAATCCTAAG 597
Query 601 CTTTCTTGCTTTGGTCTCATGAAGAATAGCCATGAAGGGAAGATTTATAGCACCAACTTA 660
||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||
Sbjct 598 CTTTCTTGCTTTGGTCTCATGAAGAATAGTCATGAAGGAAAGAATTATAGCACCAACTTA 657
Query 661 GCTTTTGCTCCTCCCGAGTATTTGCGCCTTGGTACTGTGATAGCGGAGAGCGTCACATTT 720
|| |||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||
Sbjct 658 GCATTTGCTCCTCCCGAGTATTTGCGCCTTGGTACCGTGATACCGGAGAGCGTCCCATTT 717
Query 721 AGCTTTGGAAC-CTTGTTATTGGATCTTATGAGCGGCAGACATATTCCTCCAAACCATGC 779
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 AGCTTTGGAACTCT-GTTATTGGATCTTATGAGCGGCAGACATATTCCTCCAAACCATGC 776
Query 780 ACTTGATTTGTTCCGTGGCAAAAACTATTTGGTGCTAATGGATTCAGCTCTTGATGGTCA 839
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 ACTTGATTTGTTCAGAGGCAAAAACTATTTGGTGCTAATGGATTCAGCTCTTGATGGTCA 836
Query 840 GTTCTCTGATGAAGACAGGACAGAACTAATACACGTAGCTTCTCGATGTTTCAAGACTGA 899
|||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||
Sbjct 837 GTTCTCTGATGAAGACAGGACAGAACTAATACACATAGCTTCTCGATGTTTGAAGAGTGA 896
Query 900 ACCAGAAGAGAGGCCAAGTATAAAGTTTCTTAAGGCGACTCTTTCTAGACTTCAGAAACG 959
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 ACCTGAAGAGAGGCCAAGTATAAAGTTTCTTAAGGCGACTCTTTCTAGACTTCAGAAACG 956
Query 960 GGCCAAGTTGTGCCCTATTAATGTCAAAAGACCTATGTCTCCTCCATCAAAAAATCTGCC 1019
|||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 957 AGCCAAGTTATGTCCTATTAATGTCAAAAGACCTATGTCTCCTCCATCAAACAATCTGCC 1016
Query 1020 TGAAAAGACTAAACCTGCAACAGAGTCATTGAAGTTGACTCCTTTCGGAGATGCATGTTC 1079
||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 1017 TGAAAAGACTAAATCTGCAAAAGAGTCATTGAAGTTGACTCCTTTCGGAGATGCGTGTTC 1076
Query 1080 TAGAGCGGATCTAAGTAGTATACATGAACTACTAGAGAAACTAGGGTATGAAGAAGATAA 1139
||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
Sbjct 1077 GAGAGCAGATCTAAGTAGTATACATGAACTGCTAGAGAAACTTGGGTATGAAGAAGATGA 1136
Query 1140 TGGGGTTGGTAACGAGTTTTCATTCCAAATGTGGACCGGCGAAATGCAAGAGAATATGGA 1199
|||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1137 TGGGGTCGGTAACGAGTTTTCATTCCAAATGTGGACGGGTGAAATGCAAGAGAATATGGA 1196
Query 1200 CTACAAGAAGCATGGAGATGCCGCGTTTCTTGCGAAAGATTTTGATACTGCCATTGAATT 1259
|||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||
Sbjct 1197 CTACAAGAAGCATGGAGATGTCGCGTTTCTTGCAAAAGATTTTGATACCGCCATTGAATT 1256
Query 1260 CTACACAGAGTTCATGACTGGAGCTCCTACGGTATCACCAACAGTATTGGCAAGAAGGTG 1319
||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1257 CTACACAGAGTTCATGAGTGGAGCTCCTGCGGTGTCACCAACAGTATTGGCAAGAAGGTG 1316
Query 1320 TCTTTGTTACCTAATGACTGAAATGTTCAGCGAGGCTCTAAGCGATGCGATGCAAGCGCA 1379
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1317 TCTTTGTTACCTAATGACTGAAATGTTCAGCGAGGCTCTAAGTGATGCGATGCAAGCGCA 1376
Query 1380 AGTAGCTTCACCGGAATGGCCAATTCCTCTTTACTTACAAGCGGCTTGTCTCTTCAAGCT 1439
|||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1377 AGTAGCTTCACCTGAATGGCCAATCCCTCTTTACTTACAAGCAGCTTGTCTCTTCAAGCT 1436
Query 1440 AGAGATGGAAGCTGAAGCTAAAGAAGCACTTAGACATGGTTCTGCTCTTGAGGCTTATTA 1499
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1437 AGAGATGGAAGCTGAAGCTAAAGAAGCAGTTAGACATGGTTCTGCTCTTGAGGCTTATTA 1496
Query 1500 G 1500
|
Sbjct 1497 G 1497
> Ahg317726 jgi|Araly1|317726|fgenesh1_pm.C_scaffold_3000742
Length=1521
Score = 1146 bits (620), Expect = 0.0
Identities = 1153/1402 (82%), Gaps = 69/1402 (5%)
Strand=Plus/Plus
Query 129 GATTTTCCGTGAGTTCAGTTTAGAACAGCTGAGAATCGCCACCGACGGTTTCTCCGCCGG 188
||||||||| || ||||| || |||||| ||||| |||| || ||||| |||||||||||
Sbjct 159 GATTTTCCGGGAATTCAGCTTGGAACAGTTGAGAGTCGCAACTGACGGATTCTCCGCCGG 218
Query 189 AAACATCGTATCGGAGCACAACGATTCGGTACCAAACATCGTCTACAAAGGAAAACTCGG 248
|||||||| |||||||||||||| ||| || ||||||||||||||||| || |||
Sbjct 219 CAACATCGTGTCGGAGCACAACGAGAGGGTTCCTAACATCGTCTACAAAGGGAAGCTCAA 278
Query 249 CGATGGTCG-TCGCATCGCCGTCAAACGGTTTCAAAGACTTTCTTGGCCTGATCCTTTCG 307
|| || | | ||||||||||||||||||||||| ||||| ||||||||| ||||||
Sbjct 279 AGACGGAAGAAAG-ATCGCCGTCAAACGGTTTCAAAGGCTTTCATGGCCTGATTCTTTCG 337
Query 308 AATTCATC-AATGAAGCACAAGCTGTTGGGAGATTG-AGGAGTGAACATATGGCGAATTT 365
|||||| | || |||||||||||||||||||| || |||||||| |||||||| |||||
Sbjct 338 AATTCACCGAA-GAAGCACAAGCTGTTGGGAG-GTGTAGGAGTGAGCATATGGCCAATTT 395
Query 366 GATCGGTTGTTGTTGTG-ATGACAACGAGAGATTACTTGTTGCTGAGTATATGCCTAATG 424
|||||||||||| | | | | | ||||||| || || ||||||||||| ||||||||||
Sbjct 396 GATCGGTTGTTGCTCAGAAGGTC-ACGAGAGGTTGCTCGTTGCTGAGTACATGCCTAATG 454
Query 425 GAACA-TTAGCAAAACATCTTTTTCACTGGGAGAAAAGACCCATGAAATGGGAAATGAGG 483
||||| || || || ||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 455 GAACACTT-GCTAAGCATCTCTTTCACTGGGAGAAAAGACCAATGAAATGGGAAATGAGA 513
Query 484 TTGAA-AGTTGC-TCTGCATACTGCAAGAGCTTTGGAGTATTGTAATGATAAAGGAATTG 541
|| || ||||| | | |||||||||| ||| |||||||| |||||||||| ||||| |
Sbjct 514 TT-AAGGGTTGCGT-TACATACTGCAACAGCCTTGGAGTACTGTAATGATATGGGAATAG 571
Query 542 ATTTATACCATGATCTTAATC-CTTACAGGATTA-TGTTTGATAAGACAGGGATTCCTAA 599
|||| || || |||||||| | | |||| || || ||||||||||| |||| |||||
Sbjct 572 ATTTGTATCACGATCTTAA-CACCTACA-GAATATTGTTTGATAAGGTTGGGAATCCTAG 629
Query 600 GCTTTCTTGCTTT-GGTCTCATGAAGAATAGCCATGA-AGGG-AAGATTTATAGCACCAA 656
||| ||||| ||| |||||||||||| ||||| || |||| |||| ||||| |||||
Sbjct 630 GCTGTCTTG-TTTCGGTCTCATGAAGTGTAGCC--GAGAGGGAAAGAGCTATAGTACCAA 686
Query 657 CTTAGCTTTTGCTCCTCCCGAGTATTTGCGCCTTGGTACTGTGATAGCGGAGAGCGTCAC 716
||| || ||||||||||| || ||||| || || |||||||||||| ||||||| |||||
Sbjct 687 CTTGGCATTTGCTCCTCCTGAATATTTACGTCTAGGTACTGTGATACCGGAGAGTGTCAC 746
Query 717 ATTTAGCTTTGGAACCTTGTTATTGGATCTTATGAGCGGCAGACATATTCCTCCAAACCA 776
||||||||| || ||||||||| |||||||||||||||||||||||||||| || |||||
Sbjct 747 ATTTAGCTTCGGGACCTTGTTACTGGATCTTATGAGCGGCAGACATATTCCACCTAACCA 806
Query 777 TGCACTTGATTTGTTCCGTGGCAAAAACTATTTGGTGCTAATGGATTCAGCTCTTGATGG 836
|||||||||| | |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 807 TGCACTTGATCTATTCCGTGGTAAAAACTATTTGGTGCTAATGGATTCAGCTCTGGATGG 866
Query 837 TCAGTTCTCTGATGAAGACAGGACAGAACTAATACA-CGTAGCTTCTCGATGTTTCAAGA 895
||| ||||||||||| || || ||||||||||| || | ||||||| || |||||| |
Sbjct 867 TCAATTCTCTGATGAGGATAGAACAGAACTAATCCATC-TAGCTTCCCGCTGTTTCCGGC 925
Query 896 CTGAACCAGAAGAGAGGCCAAGTATAAAGTTTCTTAAGGC-GACTCTTTCTAGACTTCAG 954
|| ||||||| ||||| ||||||||||||||||||| | | | ||||||| |||||| ||
Sbjct 926 CTAAACCAGACGAGAGACCAAGTATAAAGTTTCTTATGTCTG-CTCTTTCAAGACTTGAG 984
Query 955 AAACGGGCCAAGTTGTG-CCCTATTAATGTCAA--AAGACCTATGTCTCCTCCATCAAAA 1011
||||| || |||| || ||| | | ||||| |||| | | |||| | || |
Sbjct 985 AAACGAGCTGAGTTATGGCCC-A--AC-GTCAACGAAGAAA-ACAT-TCCTAC-TCCA-- 1035
Query 1012 AATCTGCCTGAAAAGACTAAACCTGCAACA--G-AGTCATTGAAG-TTGACTCCTTTCGG 1067
|| | | | |||||||||||||| | || ||||| | ||||| ||||||||
Sbjct 1036 --TCAGAC--A-----CTAAACCTGCAACAAAGGAGCCATTGC-GCTTGACCCCTTTCGG 1085
Query 1068 AGATGCATGTTCTAGAGCGGATCTAAGTAGTATACATGAACTACTAGAGAAACTAGGGTA 1127
||| ||||| | |||| |||||| ||| ||||||| |||||||| |||||||| |||||
Sbjct 1086 AGAAGCATGCTGGAGAGTGGATCTGAGTGGTATACACGAACTACTCGAGAAACTCGGGTA 1145
Query 1128 TGAAGAAGATAATGGGGTTGGTAAC----GAGTTTTCATTCCAAATGTGGACCGG-CGAA 1182
|| ||| ||| ||| ||| ||| || ||||| ||||||||||||||||| || | ||
Sbjct 1146 TGGAGAGGATGATGTGGT-GGTCACAAATGAGTTCTCATTCCAAATGTGGACGGGTC-AA 1203
Query 1183 ATGCAAGAGAATATGGACTACAAGAAGCATGGAGATGCCGCGTTTCTTGCGAAAGATTTT 1242
||||||||||||||||| ||||||||||||||||||||||| |||| ||| |||||||||
Sbjct 1204 ATGCAAGAGAATATGGATTACAAGAAGCATGGAGATGCCGCATTTCGTGCTAAAGATTTT 1263
Query 1243 GATACTGCCATTGAATTCTACACAGAGTTCATGACTGGAGCTCCTAC-GGTATCACCAAC 1301
|| || || || ||||| |||||||||||||||| |||||| || | ||||||||||||
Sbjct 1264 GAAACAGCAATCGAATTTTACACAGAGTTCATGAGTGGAGCACC-AGTGGTATCACCAAC 1322
Query 1302 AGTATTGGCAAGAAGGTGTCTTTGTTACCTAATGA-CTGAAATGTTCAGCGAGGCTCTAA 1360
|||||| || ||| ||||||| ||||||||||||| || | |||||| ||||||||||||
Sbjct 1323 AGTATTAGCCAGACGGTGTCTATGTTACCTAATGAGCT-ATATGTTCCGCGAGGCTCTAA 1381
Query 1361 GCGATGCGATGCAAGCGCAAGTAGCTTCACCGGAATGGCCAATTC-CTCTTTACTTACAA 1419
| |||||||||||||| || || || || || || | |||| | |||| |||||||||
Sbjct 1382 GTGATGCGATGCAAGCTCAGGTCGCATCGCCAGAGTTTTCAAT-CGCTCTCTACTTACAA 1440
Query 1420 GCGGCTTGTCTCTTCAAGCTAGAGA-TGGAAGCTGAAGCTAAAGAAGCACTTAGACATGG 1478
|||||||||| || ||||| | || |||| ||||||||||||||||| |||||||||||
Sbjct 1441 TCGGCTTGTCTTTTAAAGCTTG-GAATGGAGGCTGAAGCTAAAGAAGCTCTTAGACATGG 1499
Query 1479 TTCTGCTCTTGAGGCTTATTAG 1500
||| |||| || |||| ||||
Sbjct 1500 CTCTTCTCTCGAAGCTTTTTAG 1521
> Ahg333388 jgi|Araly1|333388|fgenesh1_pm.C_scaffold_710000001
Length=1407
Score = 869 bits (470), Expect = 0.0
Identities = 1024/1277 (80%), Gaps = 96/1277 (8%)
Strand=Plus/Plus
Query 129 GATTTTCCGTGAGTTCAGTTTAGAACAGCTGAGAATCGCCACCGACGGTTTCTCCGCCGG 188
||||||||| || || || || |||||| ||||| |||| || ||||| |||||||||||
Sbjct 117 GATTTTCCGGGAATTTAGCTTGGAACAGTTGAGAGTCGCAACTGACGGATTCTCCGCCGG 176
Query 189 AAACATCGTATCGGAGCACAACGATTCGGTACCAAACATCGTCTACAAAGGAAAACTCGG 248
|||||||| |||||||||||||| ||| || ||||||||||||||||| | |||
Sbjct 177 CAACATCGTGTCGGAGCACAACGAAAGGGTTCCTAACATCGTCTACAAAGGGCAGCTCAA 236
Query 249 CGATGGTCG-TCGCATCGCCGTCAAACGGTTTCAAAGACTTTCTTGGCCTGATCCTTTCG 307
||| || | | ||||| ||||| |||||| |||| ||||| ||||||||| ||||||
Sbjct 237 CGACGGAAGAAAG-ATCGCTGTCAAGCGGTTTAAAAGGCTTTCATGGCCTGATTCTTTCG 295
Query 308 AATTCATC-AATGAAGCACAAGCTGTTGGGAGATTG-AGGAGTGAACATATGGCGAATTT 365
|||||||| || ||||||||||||||||||||| || |||||||| |||||||| |||||
Sbjct 296 AATTCATCGAA-GAAGCACAAGCTGTTGGGAGA-TGTAGGAGTGAGCATATGGCTAATTT 353
Query 366 GATCGGTTGTTGTTGTG-ATGACAACGAGAGATTACTTGTTGCTGAGTATATGCCTAATG 424
|||||||||||| | | | | | ||||||| || || ||||||||||| ||||||||||
Sbjct 354 GATCGGTTGTTGCTCAGAAGGTC-ACGAGAGGTTGCTCGTTGCTGAGTACATGCCTAATG 412
Query 425 GAACA-TTAGCAAAACATCTTTTTCACTGGGAGAAAAGACCCATGAAATGGGAAATGAGG 483
||||| || || || ||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 413 GAACACTT-GCTAAGCATCTCTTTCACTGGGAGAAAAGACCAATGAAATGGGAAATGAGA 471
Query 484 TTGAA-AGTTGC-TCTGCATACTGCAAGAGCTTTGGAGTATTGTAATGATAAAGGAATTG 541
|| || ||||| | | |||||||||| ||| |||||||| |||||||||| ||||| |
Sbjct 472 TT-AAGGGTTGCGT-TACATACTGCAACAGCCTTGGAGTACTGTAATGATATGGGAATAG 529
Query 542 ATTTATACCATGATCTTAATC-CTTACAGGATTA-TGTTTGATAAGACAGGGATTCCTAA 599
|||| || ||||||||||| | | |||| || || ||||||||||| |||| |||||
Sbjct 530 ATTTGTATCATGATCTTAA-CACCTACA-GAATATTGTTTGATAAGGTTGGGAATCCTAG 587
Query 600 GCTTTCTTGCTTT-GGTCTCATGAAGAATAGCCATGA-AGGG-AAGATTTATAGCACCAA 656
||| ||||| ||| |||||||||||| ||||| || |||| |||| ||||| |||||
Sbjct 588 GCTGTCTTG-TTTCGGTCTCATGAAGTGTAGCC--GAGAGGGAAAGAGCTATAGTACCAA 644
Query 657 CTTAGCTTTTGCTCCTCCCGAGTATTTGCGCCTTGGTACTGTGATAGCGGAGAGCGTCAC 716
||| || ||||||||||| || ||||| || || |||||||||||| ||||||| |||||
Sbjct 645 CTTGGCATTTGCTCCTCCTGAATATTTACGTCTAGGTACTGTGATACCGGAGAGTGTCAC 704
Query 717 ATTTAGCTTTGGAACCTTGTTATTGGATCTTATGAGCGGCAGACATATTCCTCCAAACCA 776
||||||||| || ||||||||| |||||||||||||||||||||||||||| || |||||
Sbjct 705 ATTTAGCTTCGGGACCTTGTTACTGGATCTTATGAGCGGCAGACATATTCCACCTAACCA 764
Query 777 TGCACTTGATTTGTTCCGTGGCAAAAACTATTTGGTGCTAATGGATTCAGCTCTTGATGG 836
|||||||||| | ||||||| | || |||| | ||| | | ||| ||||
Sbjct 765 TGCACTTGATCTATTCCGTG-CT----CTGGATGGT-C-AAT---T-C---TCT-GATG- 808
Query 837 TCAGTTCTCTGATGAAGACAGGACAGAACTAATACA-CGTAGCTTCTCGATGTTTCAAGA 895
|| ||| | || | |||||||||| || | ||||||| || |||||| |
Sbjct 809 --AG------GAT-A-GA-A---CAGAACTAATCCATC-TAGCTTCCCGCTGTTTCCGGC 853
Query 896 CTGAACCAGAAGAGAGGCCAAGTATAAAGTTTCTTAAGGC-GACTCTTTCTAGACTTCAG 954
|| ||||||| ||||| ||||||||||||||||||| | | | ||||||| |||||| ||
Sbjct 854 CTAAACCAGACGAGAGACCAAGTATAAAGTTTCTTATGTCTG-CTCTTTCAAGACTTGAG 912
Query 955 AAACGGGCCAAGTTGTG-CCCTATTAATGTCAA--AAGACCTATGTCTCCTCCATCAAAA 1011
||||| || |||| || ||| | | ||||| |||| | | |||| | || |
Sbjct 913 AAACGAGCTGAGTTATGGCCC-A--AC-GTCAACGAAGAAA-ACAT-TCCTAC-TCCA-- 963
Query 1012 AATCTGCCTGAAAAGACTAAACCTGCAACA--G-AGTCATTGAAGTT-GACTCCTTTCGG 1067
|| | | | |||||||||||||| | || ||||| ||| ||| ||||||||
Sbjct 964 --TCAGAC--A-----CTAAACCTGCAACAAAGGAGCCATTGC-GTTTGACCCCTTTCGG 1013
Query 1068 AGATGCATGTTCTAGAGCGGATCTAAGTAGTATACATGAACTACTAGAGAAACTAGGGTA 1127
||| ||||| | |||| |||||| ||| ||||||| |||||||| |||||||| |||||
Sbjct 1014 AGAAGCATGCTGGAGAGTGGATCTGAGTGGTATACACGAACTACTCGAGAAACTCGGGTA 1073
Query 1128 TGAAGAAGATAATGGGGTTGGTAAC----GAGTTTTCATTCCAAATGTGGACCGG-CGAA 1182
|| ||| ||| ||| ||| ||| || ||||| ||||||||||||||||| || | ||
Sbjct 1074 TGGAGAGGATGATGTGGT-GGTCACAAATGAGTTCTCATTCCAAATGTGGACGGGTC-AA 1131
Query 1183 ATGCAAGAGAATATGGACTACAAGAAGCATGGAGATGCCGCGTTTCTTGCGAAAGATTTT 1242
||||||||||||||||| ||||||||||||||||||||||| |||| ||| |||||||||
Sbjct 1132 ATGCAAGAGAATATGGATTACAAGAAGCATGGAGATGCCGCATTTCGTGCTAAAGATTTT 1191
Query 1243 GATACTGCCATTGAATTCTACACAGAGTTCATGACTGGAGCTCCTAC-GGTATCACCAAC 1301
|| || || || ||||| |||||||||||||||| |||||| || | ||||||||||||
Sbjct 1192 GAAACAGCGATCGAATTTTACACAGAGTTCATGAGTGGAGCACC-AGTGGTATCACCAAC 1250
Query 1302 AGTATTGGCAAGAAGGTGTCTTTGTTACCTAATGA-CTGAAATGTTCAGCGAGGCTCTAA 1360
|||||| || ||| ||||||| ||||||||||||| || | |||||| ||||||||||||
Sbjct 1251 AGTATTAGCCAGACGGTGTCTATGTTACCTAATGAGCT-ATATGTTCTGCGAGGCTCTAA 1309
Query 1361 GCGATGC-GATGCAAGC 1376
| ||||| |||||||||
Sbjct 1310 GTGATGCTGATGCAAGC 1326
> Ahg921006 jgi|Araly1|921006|scaffold_102287.1
Length=227
Score = 291 bits (157), Expect = 1e-77
Identities = 193/210 (92%), Gaps = 4/210 (2%)
Strand=Plus/Plus
Query 1268 AGTTCATGACTGGAGCTCCTACGGTATCACCAACAGTATTGGCAAGAAGGTGTCTTTGTT 1327
||||||||| |||||||||||| | ||| ||||||||||||||||||||||||||||||
Sbjct 17 AGTTCATGAGTGGAGCTCCTACAATGTCATCAACAGTATTGGCAAGAAGGTGTCTTTGTT 76
Query 1328 ACCTAATGACTGAAATGTTCAGCGAGGCTCTAAGCGATGCGATGCAAGCGCAAGTAGCTT 1387
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 77 ACCTAATGACTGAAATGTTCAGTGAGGCTCTAAGCGATGCGATGCAAGCGCAAGTAGCTT 136
Query 1388 CACCGGAATGGCCAAT--TCC-TCT-TTACTTACAAGCGGCTTGTCTCTTCAAGCTAGAG 1443
||| |||||||||||| ||| ||| ||| ||||| | || ||||||||| ||||| |||
Sbjct 137 CACTGGAATGGCCAATAATCCCTCTCTTATTTACATGTGGTTTGTCTCTTGAAGCTCGAG 196
Query 1444 ATGGAAGCTGAAGCTAAAGAAGCACTTAGA 1473
||||||||||||||||||||||||||||||
Sbjct 197 ATGGAAGCTGAAGCTAAAGAAGCACTTAGA 226
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56145021130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5