BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G01070.2

Length=621
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg486972 jgi|Araly1|486972|fgenesh2_kg.6__106__AT5G01070.1          276    2e-73


> Ahg486972 jgi|Araly1|486972|fgenesh2_kg.6__106__AT5G01070.1
Length=334

 Score =  276 bits (149),  Expect = 2e-73
 Identities = 167/176 (95%), Gaps = 0/176 (0%)
 Strand=Plus/Plus

Query  1    ATGTCATCTTACGAAATCTCTCACATTGATTTAGAAAATGGTTCCGGCGAGCGTCAATAC  60
            ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct  1    ATGTCTTCTTACGAAATCTCTCACATTGATTTGGAAAATGGTTCCGGCGAGCGTCATTAC  60

Query  61   CGTCCAAGTGACGTCAGCGGAGAAGATAGTTCTTCTTGTGATTACGACTACGATTTTCAC  120
            |||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct  61   CGTCGAAGTGACGTCAGCGGAGAAGACAGTTCATCTTGTGATTACGACTACGATTTTCAC  120

Query  121  TCAGCTGTTCGTAGCTTTTGCGGCGAGTTTGAGATTGCTGATGATTTGGACGACGA  176
            ||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct  121  TCAGCTGTTCGTAGCTTTTGCGGTGAGTTTGAGATGGCTGATGACTTGGACGACGA  176


 Score =  268 bits (145),  Expect = 3e-71
 Identities = 153/157 (97%), Gaps = 0/157 (0%)
 Strand=Plus/Plus

Query  216  GTCTCCGGAGAAAGATTGCCGGATTTGCCATTTGGGTTTAGAGAGTAGTCGTCATGAATG  275
            |||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct  177  GTCTCCAGAGAAAGATTGCCGGATTTGCCATTTGGGCTTAGAGAGTAGTCGCCATGAATG  236

Query  276  TGGAGATCCAATGGTTCTTGGATGTTCTTGTAAAGATGATTTGGGTTATGTTCATAAGCA  335
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  237  TGGAGATCCAATGGTTCTTGGATGTTCTTGTAAAGATGATTTGGGTTACGTTCATAAGCA  296

Query  336  ATGTGCCGATACTTGGTTCAAGATCAAGGGTAATAAG  372
            |||||||||||||||||||||||||||||||||||||
Sbjct  297  ATGTGCCGATACTTGGTTCAAGATCAAGGGTAATAAG  333



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22721258532


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5