BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01075.1
Length=519
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324871 jgi|Araly1|324871|fgenesh1_pm.C_scaffold_6000091 340 5e-93
> Ahg324871 jgi|Araly1|324871|fgenesh1_pm.C_scaffold_6000091
Length=240
Score = 340 bits (184), Expect = 5e-93
Identities = 227/246 (92%), Gaps = 10/246 (4%)
Strand=Plus/Plus
Query 27 ATGAAGACGTCAAGCTTTGTCTTCCTTTTGGTTGTAATAATCCTAAGCTTCTCACTACTA 86
|||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1 ATGAAGACATCAAGCTTTGTCTTCCTTTTGGTTGTAATAATCCTAAGCTTCT--C-ACTA 57
Query 87 GCTTCTTCTTCTGAAATGAAAGTGGGGTTGGAGGATTACAATTTTCCAGTGGATCCAACT 146
||||| | |||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 58 GCTTC--C-TCTGAAATGAAACTGAGGTTGGAGGATTACAATTTTCCAGTGGATCCAACT 114
Query 147 CCGACGACAAAAGCTTCGATAAAACCAGGTCCTATTGAGCATGGAACTCCTCTCAATCCT 206
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 CCGACGACAAAAGCTACGATAAAACCAGGTCCTATTGAGCATGGAACTCCTCTCAATCCT 174
Query 207 TATATTCCTAAGCCTCCTTCTCCTTCTTCGTC-TCCTCCTCCACAGCAATCC-CAAGACG 264
||||| ||||||||||||||| ||||||| || |||||| | ||| ||| || |||||||
Sbjct 175 TATATACCTAAGCCTCCTTCTTCTTCTTC-TCCTCCTCCACAACAACAA-CCTCAAGACG 232
Query 265 GTGGAT 270
||||||
Sbjct 233 GTGGAT 238
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18887016555
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5