BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01080.1
Length=555
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942705 jgi|Araly1|942705|scaffold_603249.1 121 7e-27
Ahg925746 jgi|Araly1|925746|scaffold_201307.1 52.8 3e-06
> Ahg942705 jgi|Araly1|942705|scaffold_603249.1
Length=2035
Score = 121 bits (65), Expect = 7e-27
Identities = 141/177 (80%), Gaps = 8/177 (5%)
Strand=Plus/Plus
Query 2 TGTTGCTTTGTTGGTAC-A-ATTATATCTCGAGAACCCTGCCTTTCGAAGCACCTAGAGA 59
||||||| ||||||| | | ||| ||| | ||||||||||||||| ||| |||||||
Sbjct 484 TGTTGCTATGTTGGTTCAAGATT-TAT-TTGAGAACCCTGCCTTTAGAACCACCTAG-TT 540
Query 60 G-ATTTTTCATAAAACCAAAAGAGTGAAGAAGAACGGCACTATGATCCCGTCTCCACA-G 117
| ||| | ||| || ||||| |||||||| |||||| |||||||||||||| | | |
Sbjct 541 GTATTATCCATGAATTTAAAAGCTTGAAGAAGGACGGCATTATGATCCCGTCTCTA-AGG 599
Query 118 AGCGGTGATTACCGTAGCTTTTTCAACTCTTCATCCCCGCTTCCTTTGATTATCGAG 174
||||||||||||| | ||| ||||||| ||||||||| |||| | || ||| ||||
Sbjct 600 AGCGGTGATTACCAAAACTTCTTCAACTTTTCATCCCCACTTCATCTGTTTACCGAG 656
> Ahg925746 jgi|Araly1|925746|scaffold_201307.1
Length=1549
Score = 52.8 bits (28), Expect = 3e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 221 TTAAAAGCTTGAAGAAGAACGGCATTAT 248
||||||||||||||||||||||||||||
Sbjct 904 TTAAAAGCTTGAAGAAGAACGGCATTAT 931
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20260617759
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5