BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01090.1
Length=1495
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939568 jgi|Araly1|939568|scaffold_600112.1 1615 0.0
> Ahg939568 jgi|Araly1|939568|scaffold_600112.1
Length=1099
Score = 1615 bits (874), Expect = 0.0
Identities = 1032/1108 (93%), Gaps = 11/1108 (1%)
Strand=Plus/Plus
Query 204 CAGATTCTTCAAGCTCAGCTATGGCGGTCTTCAAAACCCTAGCTTTCCTATTCGTTTTAA 263
||| |||||||||||||||||||||||||||||||||||||||||| || ||| |||||
Sbjct 1 CAGTTTCTTCAAGCTCAGCTATGGCGGTCTTCAAAACCCTAGCTTTTCTGTTCTTTTTAT 60
Query 264 GCATCGTGATTTACCAATCAGTGGCTGTTACAGATGTAAATTCATCGTTTTCCTTTAATG 323
|| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 61 GCTTCGTGATTTACCAAGCAGTGGCTGTTACAGATGTAAATTCATCGTTTTCGTTTAATG 120
Query 324 GGTTTGTGAAAGCTCCAAGCTTTGACAATAATGTTGCTCTGTTTGGAGATTCGAAGCTCG 383
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 121 GGTTTGTGAAATCTCCAAGCTTTGACAAGAATGTTGCTCTGTTTGGAGATTCGAAGCTCG 180
Query 384 TTCATGGCGGTCCATCGATACAATTGACTGACTCAGTGAGTCGCAGTGAAGGGCGAGTTA 443
|| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 181 TTAATGGCGGTCCATCGATTCAATTGACTGACTCAGTGAGTCGAAGTGAAGGGCGAGTTA 240
Query 444 TTTACAAGAAACCCATCAGACTGTTCCAAGGTAAAGAGAGAAACTTTTCCGGATCATTCT 503
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 241 TTTACAAGAAACCCATCAGACTATTCCAAGGTAAAGAGAGAAACTCTTCCGGATCATTCT 300
Query 504 CAACTAGTTTCTCGTTTTCGATGTCTGATGAGATTGGTAGTGTCTTGGCTTTTATAATGG 563
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 301 CAACTAGTTTCTCGTTTTCGATGTCTGATGAGATTGGTAGTGTCCTGGCTTTTGTAATGG 360
Query 564 TTCCAAGAGGTTTGGATCTTAGGTTGTTTGGTAGAAAGGGTAATAATAGTTCCTCTGGTT 623
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 361 TTCCAAGAGGTTTGGATCTTAGGTTGTTTGGTAGAAAGGGTAATA---GTTCCTCTGGTC 417
Query 624 TAGGGTTCTTATTGAAACACAAAGTTGTTGCTGTTGAGTTTGGTATCTCCAAGAGAGGGA 683
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 418 TAGGGTTCTTATTGAAACACAAGGTTGTTGCTGTTGAGTTTGGTATCTCCAAAAGAGGGA 477
Query 684 ATCATGTAGGGATCTTAGTTGGTCGTCCTGAATCTGGTAAAGTTAGAAAGTTATCATCTT 743
||| ||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 478 ATCGTGTTGGGATCTTAGTTGGTAGACCTGAATCTGGTAAAGTTAGAAAGTTATCATCTT 537
Query 744 TTGGTCACCATTTCAATGAAGAGAAGAGATTGAATTGTTGGATTGATTATGAGGCAAGCT 803
||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||| |
Sbjct 538 TTGGTGACCATTTCAATGGAGAGAAGAAATTGAATTGTTGGATTGATTATGAGGCAAGTT 597
Query 804 CAAAGAGAATAGAGGTTCGTTTGAGTCTATCTGCTGCCTTAAAGCCGGTGGATCCATTCG 863
|||||||||||||||||||||||||||||||| | || |||||||||||||||||||| |
Sbjct 598 CAAAGAGAATAGAGGTTCGTTTGAGTCTATCTACGGCTTTAAAGCCGGTGGATCCATTTG 657
Query 864 TGTCTTACTCTG-TAGACTTGGCTAAGCTATGGAAAGATGGGAAGTTTATGGTGGGTTTA 922
||||||||| || |||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 658 TGTCTTACT-TGGTAGACTTGGCTAAGCTATGGAAAGATGGGAAGTTCATGGTGGGTCTA 716
Query 923 ACCTCTGCAAATGGAAACACTTCAAAGCCGGTTTATCTCCATTCGTGGAGCTTTAAACTG 982
|||||||||||||||||| |||||||||| |||||||||||||| |||| ||||||||||
Sbjct 717 ACCTCTGCAAATGGAAACTCTTCAAAGCCAGTTTATCTCCATTCATGGAACTTTAAACTG 776
Query 983 AGACATCCTTCGATGAGGATTCACTCGCAGCCGCTTGATCCAAACGACGTTTCCAAGACT 1042
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 777 AGACATCCTTCGATGAGGATTCACTCACAGCCGCTTGATCCAAACGATGTTTCCAAGACC 836
Query 1043 GTTAAGGAAGGGGAGAAGACGGTGGAAGTTAAGGGGAAAGGAAAATGTATATGGAGAATC 1102
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 837 GCTAAGGAAGGGGAGAAGACGGTGGAAGTTAAGGGGAAAGGAAAATGCATATGGAGAATC 896
Query 1103 CTTGGTGCATTGGTTTTGGGGGCGGTTTGTGGAACATTGGGAGCCATGTTC-GCGTTATA 1161
||||||||||||||||| || ||||||||||| || || ||||| |||| | ||||| ||
Sbjct 897 CTTGGTGCATTGGTTTTAGGTGCGGTTTGTGGGACTTTAGGAGCGATGT-CAGCGTTGTA 955
Query 1162 CCTTTGGACAATATGCGGTAATAGGCAGTCAATGGCGATAGTTCCCGAGGAATGTGCTGA 1221
|||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||| |
Sbjct 956 CCTTTGGACAATATGCGGTAATCGGCAGTCAATGGCAATAGTTCCTGAGGAATGTGCTAA 1015
Query 1222 CGAAAAAGCGGATATCCTTGTAACGAAAGCTGATGTTGTTGTTGAAGAAGAAGTCAAGAA 1281
| |||||||||||||| |||||| |||| | |||||||||| |||||||| | |||||
Sbjct 1016 CAAAAAAGCGGATATCGTTGTAATGAAATCAGATGTTGTTGATGAAGAAGG-G--AAGAA 1072
Query 1282 GTAGTAGAAAAAGAAAAgtttggtgtgt 1309
|||| ||||| | || |||||||| |||
Sbjct 1073 GTAGCAGAAAGATAAGAGTTTGGT-TGT 1099
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55954569905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5