BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01100.1
Length=2364
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486969 jgi|Araly1|486969|fgenesh2_kg.6__103__AT5G01100.1 3312 0.0
> Ahg486969 jgi|Araly1|486969|fgenesh2_kg.6__103__AT5G01100.1
Length=2281
Score = 3312 bits (1793), Expect = 0.0
Identities = 2058/2185 (94%), Gaps = 21/2185 (1%)
Strand=Plus/Plus
Query 96 AAGTTTCAACAATGGAGATTCTTCGTTGATTCCTAAATATCTC-CTCTGATCATATTTTT 154
|||||||||||||||||| ||||| |||||||||||||||||| ||| ||||||||||||
Sbjct 71 AAGTTTCAACAATGGAGAATCTTCATTGATTCCTAAATATCTCTCTCCGATCATATTTTT 130
Query 155 TCATT-CAAAAAGAATCCTCTGTTTTCCCCGGCGGTCACATGTCAGTCGGCGTTCCAGTG 213
| || | |||| |||| ||||||| |||||||| |||||||||||||||||||| |||
Sbjct 131 TGTTTCCTAAAA-TATCCCCTGTTTTTCCCGGCGGCCACATGTCAGTCGGCGTTCCGGTG 189
Query 214 AATCCGTCAAGCAGCAGCCAACTACCGGCGGCGCCAACAACAACAACAAGACGGCGCGTG 273
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 190 AATCCGTCGAGCAGCAGCCAATTACCGGCGGCGCCAACAACAACAACAAGACGGCGCATG 249
Query 274 GCTGATTCTCAAGAAGATCATTCCCACGTCAACACCGTCGGAGGAGGAAACGCAGTCGTT 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 GCTGATTCTCAAGAAGATCATTCCCACGTCAACACCGTCGGAGGAGGAAACGCAGTCGTT 309
Query 334 TACGTCCCCGACGAGGAAGAAACCGCTACGAGCTGCTGCGGCggaggaggaggaggagga 393
|||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||
Sbjct 310 TACGTCCCCGACGAGGAAGAAACCGCCACGAGCTGCGGCGGCGGAGGAGGAGTAGGAGGA 369
Query 394 TCATTATCGTGTTGTCCAAGTGGCTCCCACCACAATTACCTCGTCGGGTTCCTCTCTCTC 453
| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 --A-CATCGTGTTGTCCTAGTGGCTCCCACCACAATTACCTCGTCGGGTTCCTCTCTCTC 426
Query 454 CGAAAATTCAGGCTCGTGTGGATGCTAATGGTTGAGAACAAATCTAAATGGACGGCTGGG 513
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 CGCAAATTCAGGCTCGTGTGGATGCTAATGGTTGAGAACAAATCTAAATGGACGGCTGGG 486
Query 514 ATTGCTCGTAACATGAGATCCACGACCAATCTTGGCCGTTTTATTCTAACGTTATTGAGT 573
||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||
Sbjct 487 ATTGCTCGTAACATGAGATCCTCGACCAATCTTGGCCGTTTGATTCTAAAGTTATTGACC 546
Query 574 ATCCTCGTCGTCACTTTTTTCCTCATCGTTGCTCTCTCCGGCGGCGTTGGAAGACGGAGA 633
|| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 547 ATACTCGTCGTAACTTTTTTCCTCATCGTTGCTCTCTCCGGCGGCGTTGGACGACGGCGA 606
Query 634 AAACACGTTGAGAAACATGAATTCGTTGTTTCAATTCATCCCAGACCAACGATTGAGAAA 693
| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 607 AGACACGTGGAGAAACATGAATTCGTTGTTTCAATTCATCCTAGACCAACGATTGAGAAA 666
Query 694 ATCATTAGAGAAGATGAATCATCCAATTCCTTTCAAGTCCTCGTTCCAAAAACTACATCG 753
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||
Sbjct 667 ATCATTAGAGAAGATGAATCATCCAATTCCTTTCAAGTCCTCGTACCAAAGACTAAATCG 726
Query 754 ATCCCAGAGATTTGGAATCAACCGGAGGTTGGGAACTATCAGAAATGTGTAGCTCGTCCT 813
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 727 ATCCCAGAGATTTGGAATCAACCAAAGACTGGGAACTATCAGAAATGTGTAGCTCGTCCT 786
Query 814 AAGAACCAAAGACCAATCAAGCAAACCAATGGTTACCTTCTTGTTCACGCCAATGGTGGT 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 AAGAACCAAAGACCAATCAAGCAAACCAATGGTTACCTTCTTGTTCACGCCAATGGTGGT 846
Query 874 TTGAATCAGATGAGAACTGGTATATGTGATATGGTGGCAATCGCTAAAATCATGAACGCA 933
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 847 TTGAATCAGATGAGAACTGGTATATGTGATATGGTCGCAATCGCTAAAATCATGAACGCG 906
Query 934 ACTCTTGTTCTTCCGTTTCTTGACCATTCATCTTTCTGGAGTGATCCAAGCTCGTTCAAG 993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 ACTCTTGTTCTTCCGTTTCTTGACCATTCATCTTTCTGGAGTGATCCAAGCTCGTTCAAG 966
Query 994 GACATTTTCGACTGGAAACATTTCATAAAAGTACTAGCAGAAGATGTCAATATTGTCGAG 1053
|||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 967 GACATTTTCGACTGGAGACATTTCATCAAAGTTCTAGCAGAAGATGTCAATATTGTCGAG 1026
Query 1054 TATTTACCGCAAGAATTTGCTTCGATTAAGCCTCTTGAAAAGAATCCTGTGTCCTGGTCT 1113
|| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1027 TACTTACCGCAAGAATATGCTTCTATTAAGCCTCTTGAAAAGAATCCTGTGTCCTGGTCT 1086
Query 1114 AAGTCGAGTTATTACAGAAACTCAATCTCCAAGTTACTTAAGAAGCATAAGGTGATTGTA 1173
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1087 AAGTCGAGTTACTACAGAAACTCAATCTCCAAGTTACTGAAGAAGCATAAGGTGATTGTA 1146
Query 1174 TTCAATCACACTGATTCTCGGCTAGCCAACAACAGTCCGCCTCCTTCCATCCAGCGGCTT 1233
|||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||
Sbjct 1147 TTCAATCACACTGATTCTCGGCTAGCGAACAACAGTCCGCCTCCTTCGATCCAGAGGCT- 1205
Query 1234 C-GATGTCGCGCAAACTATGAAGCTCTTCGTTACTCTGAAGATATAGAGAATCTGAGCAA 1292
| |||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1206 CAGATGTCGCGCGAACTATGAAGCTCTTCGCTACTCTGAAGATATAGAGAATCTAAGCAA 1265
Query 1293 TGTTCTCTCTTCAAGACTTAGGGAAAACAACGAACCCTACCTCGCTCTTCACTTGCGGTA 1352
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1266 TGTTCTAGCTTCAAGACTTAGAGAAAACAACGAACCCTACCTCGCTCTTCACTTGCGGTA 1325
Query 1353 CGAGAAAGATATGTTGGCGTTTACCGGATGCAATCACAGTCTATCCAATGAAGAATCCAT 1412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1326 CGAGAAAGATATGTTGGCGTTTACCGGATGCAATCACAGTCTATCCAATGAAGAATCGAA 1385
Query 1413 TGATCTTGAGAAGATGAGGTTTAGTATTCCACACTGGAAAGAAAAAGTGATCAATGGTAC 1472
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 1386 TGATCTTGAGAAGATGAGGTATAGTATTCCACATTGGAAAGAAAAAGTGATCAATGGTAC 1445
Query 1473 AGAACGGCGTCTTGAAGGTAATTGCCCTATGACGCCGCGTGAAGCTGCCGTCTTCCTCAA 1532
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1446 AGAACGGCGTCTTGAAGGTAATTGCCCTATGACTCCGCGTGAAGCTGCCGTCTTCCTCAA 1505
Query 1533 GGCGATGGGGTTTCCTTCGACCACCAATATCTACATTGTTGCAGGAAAAATCTACGGGCA 1592
|||||||||||||||||||||||| ||||||||||||||||||||| | |||||||| ||
Sbjct 1506 GGCGATGGGGTTTCCTTCGACCACGAATATCTACATTGTTGCAGGAGAGATCTACGGTCA 1565
Query 1593 AAACAGTATGACTGCGTTCCACGAAGAGTTCCCAAACGTTTTCTTTCACAAC-ACATTGG 1651
|||||||||||||||||||||||||||||||||| ||||||||||||| | | |||||
Sbjct 1566 GAACAGTATGACTGCGTTCCACGAAGAGTTCCCAAGCGTTTTCTTTCACT-CTAAATTGG 1624
Query 1652 CCACAGAGGAAGAGCTTTCGACTATTAAACCTTATCAGAACAGATTAGCTGCTCTTGATT 1711
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1625 CCACCGAGGAAGAGCTTTCGACTATTAAACCTTACCAGAACAGATTAGCTGCTCTTGATT 1684
Query 1712 ACAATTTAGCACTCGAAAGCGATATTTTCGCTTATACTTATGATGGAAACATGGCGAAAG 1771
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1685 ACAATTTAGCACTCGAAAGTGATGTTTTCGCTTATACTTATGATGGAAACATGGCGAAAG 1744
Query 1772 CGGTTCAAGGTCACCGGAGATTCGAAGGGTTTAGAAAAACGATTAATCCCGATAGGCAAA 1831
||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1745 CGGTTCAAGGTCATCGGAGATTTGAAGGGTTTAGAAAAACGATTAACCCCGATAGGCAAA 1804
Query 1832 GATTCGTGAGATTGATTGATCGGCTCGATGCAGGACTCATATCTTGGGAAGATTTCTCGT 1891
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1805 GATTCGTGAGATTGATTGATCGCCTCGATGCAGGACTCATATCTTGGGATGATTTCTCGT 1864
Query 1892 CAAAGGTTAAGAAGA-TGCATCAGCATAGAATAGGAGCACCGTATCTTAGGCAGCCAGGA 1950
| ||||||||||| | | |||||| ||||| ||||||||||||||||||||| |||||||
Sbjct 1865 CGAAGGTTAAGAA-ACTACATCAGAATAGAGTAGGAGCACCGTATCTTAGGCGGCCAGGA 1923
Query 1951 AAGGCAGGCATGAGTCCAAAGTTAGAGGAGAATTTTTATGCTAACCCTCTTCCTGGTTGC 2010
||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1924 AAGGCAGGCTTGAGTCCAAAGTTGGAGGAGAATTTTTATGCTAACCCTCTTCCAGGTTGC 1983
Query 2011 GTGTGCGATACGTCTGAGGAACAAACCGGCCTTAACCGGTTTGAAAGACCAAGTCTACGA 2070
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1984 TTGTGCGATACGTCTGAGGAACAATCAAGCCTTAACCGGTTTGAAAGACCAAGTCTACGA 2043
Query 2071 GCACAATCTCTGAGATAAAGGGCTCAATTCAACGATTTATT-CATTAATTATACGCACAT 2129
||||||||||||||||| |||| ||||||||||||||| || ||||||||||||||||||
Sbjct 2044 GCACAATCTCTGAGATAGAGGGTTCAATTCAACGATTTTTTTCATTAATTATACGCACAT 2103
Query 2130 ACACATCATTTTTGGTTTTT-CTTTTCTGTTCATTTGTAGATTAGGGTTTCGTT-TT-A- 2185
||||| |||||||||||||| |||||||||||||||||||||||| |||| || || |
Sbjct 2104 ACACAACATTTTTGGTTTTTTCTTTTCTGTTCATTTGTAGATTAGTGTTTTTTTATTTAT 2163
Query 2186 ---A-GTATTCTAATTATAGTAGGAAATTAGAGAAATACAAGCAAGATTTTTCAACTCAG 2241
| |||||||||||||||||||||||||||||| || ||||||||||| | ||||||
Sbjct 2164 TTTAAGTATTCTAATTATAGTAGGAAATTAGAGAATTATAAGCAAGATTTGTGAACTCAA 2223
Query 2242 CTATCAAATACCAACCATTGCTTAT 2266
| |||||||||||| ||||||||||
Sbjct 2224 CAATCAAATACCAATCATTGCTTAT 2248
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89054992810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5