BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01110.1
Length=2608
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486968 jgi|Araly1|486968|fgenesh2_kg.6__102__AT5G01110.1 3217 0.0
> Ahg486968 jgi|Araly1|486968|fgenesh2_kg.6__102__AT5G01110.1
Length=2443
Score = 3217 bits (1742), Expect = 0.0
Identities = 1969/2082 (95%), Gaps = 2/2082 (0%)
Strand=Plus/Plus
Query 190 tcttcttcttcttcggcttcgttttctgtttcagattctttcttGGTGGAGAAGATTTGT 249
|||||||||||||| |||||| ||| | |||||||||||||||||||||||| || |||
Sbjct 93 TCTTCTTCTTCTTCAGCTTCGGATTCAGATTCAGATTCTTTCTTGGTGGAGAAAATCTGT 152
Query 250 TTTAGTTTGAAGCAAGGTAACAATAATGTGAGAAACCACCTGATTCGGTTAAACCCTTTA 309
|| ||||||||||| ||||| | ||||||||||||||||||||||||||| |||||||||
Sbjct 153 TTCAGTTTGAAGCAGGGTAATAGTAATGTGAGAAACCACCTGATTCGGTTGAACCCTTTA 212
Query 310 GCCGTCGTTGAGGTTTTATACCGCTGCCGCAATGATTTAACTTTAGGTCAAAGATTCGTG 369
||||||||||||||||| ||||| ||||| |||||||||| |||||||||||||||||||
Sbjct 213 GCCGTCGTTGAGGTTTTGTACCGTTGCCGTAATGATTTAAGTTTAGGTCAAAGATTCGTG 272
Query 370 GATCAATTAGGTTTCCATTTTCCGAATTTCAAGCATACGTCTTTGTCTTTAAGCGCTATG 429
||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 273 GATCAATTAGGGTTCAATTTTCCGAATTTCAAACATACGTCTTTGTCTTTAAGCGCGATG 332
Query 430 ATTCATATTCTCGTGAGGAGTGGAAGATTATCAGATGCACAGAGTTGTCTTCTTAGGATG 489
||||||||| | ||||||||||||||||| || ||||||||||||||| |||||||||||
Sbjct 333 ATTCATATTTTGGTGAGGAGTGGAAGATTGTCTGATGCACAGAGTTGTGTTCTTAGGATG 392
Query 490 ATTAGGAGGAGTGGTGTTTCTAGACTAGAGATTGTGAATTCCTTGGATTCTACGTTTAGT 549
|||||||||||||||||||||||| ||||||||||||||||||||| ||| || | ||||
Sbjct 393 ATTAGGAGGAGTGGTGTTTCTAGAGTAGAGATTGTGAATTCCTTGGTTTCGACATATAGT 452
Query 550 AATTGTGGTTCCAATGATTCGGTTTTTGATTTGTTGATTAGGACTTATGTTCAGGCTAGG 609
||||||||||| |||||||||||||| ||||||||||||||||||| ||| || |||||
Sbjct 453 AATTGTGGTTCGAATGATTCGGTTTTCGATTTGTTGATTAGGACTTTTGTACAAGCTAGA 512
Query 610 AAACTTAGAGAAGCACATGAGGCTTTTACATTGCTGAGAAGCAAAGGTTTTACGGTTTCT 669
||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 513 AAACTTAGAGAAGCATATGAGGCTTTTACATTGCTGAGAAGCAAAGGTTACACGGTTTCT 572
Query 670 ATCGATGCGTGTAACGCTCTTATCGGGAGCTTGGTGAGGATCGGGTGGGTTGAACTGGCT 729
|||||||||||||| ||||| |||||||||||||||||||| |||||||| || |||||
Sbjct 573 ATCGATGCGTGTAATGCTCTCATCGGGAGCTTGGTGAGGATTGGGTGGGTAGAGTTGGCT 632
Query 730 TGGGGTGTTTATCAGGAGATTTCTCGGAGTGGTGTTGGTATTAATGTCTATACTCTCAAT 789
||| || ||||||| ||||||||||||||||| |||||| ||||||| || |||||||||
Sbjct 633 TGGCGTATTTATCAAGAGATTTCTCGGAGTGGCGTTGGTGTTAATGTTTACACTCTCAAT 692
Query 790 ATCATGGTTAATGCTTTGTGCAAAGATGGTAAAATGGAAAAAGTCGGAACCTTTTTATCA 849
|||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 693 ATCATGGTTAATGCATTGTGCAAAGATGGTAAAATGGAACAAGTCGGAACCTTTTTGTCA 752
Query 850 CAAGTGCAAGAGAAAGGGGTTTATCCGGATATTGTAACATATAATACATTGATTAGTGCC 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 753 GAAGTGCAAGAGAAAGGGGTTTATCCGGATATTGTAACATATAATACATTGATTAGTGCA 812
Query 910 TACTCTAGTAAAGGTCTCATGGAAGAGGCATTTGAGTTGATGAATGCTATGCCGGGCAAA 969
||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 813 TACTCTAGTCAAGGTCTCATGGAAGAGGCATTTGAGTTGATGCATGCTATGCCGAGCAAA 872
Query 970 GGGTTTAGTCCTGGTGTTTATACTTATAATACTGTGATAAATGGACTGTGTAAGCATGGG 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 873 GGGTTTAGTCCTGGTGTTTATACTTATAATACTGTGATAAATGGACTGTGTAAGCATGGG 932
Query 1030 AAATATGAGAGAGCCAAGGAAGTTTTCGCGGAGATGTTAAGATCCGGGTTGAGTCCTGAC 1089
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 933 AAATATGAGAGAGCCAAGGAAGTTTTCGCGGAGATGTTGAGATCCGGGTTGAGTCCTGAC 992
Query 1090 TCCACTACCTACAGATCGTTGCTGATGGAGGCTTGTAAGAAGGGAGATGTGGTTGAAACG 1149
|||||||||||||| || ||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 993 TCCACTACCTACAGGTCATTGCTGATGGAGGCTTGTAAGAAGGGAGATGCGGTCGAAACG 1052
Query 1150 GAAAAGGTTTTCAGTGATATGAGATCTAGAGATGTTGTTCCTGATTTGGTTTGCTTTAGC 1209
||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1053 GAAAATATTTTCAGTGATATGAGATCTAGGGATGTTGTTCCGGATTTGGTTTGCTTTAGC 1112
Query 1210 TCGATGATGAGTCTTTTTACTCGGAGTGGAAATCTCGATAAGGCATTAATGTATTTTAAC 1269
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1113 TCAATGATGAGTCTTTTTACTCGGAGTGGAAATCTCGATAAGGCATTAATGTATTTTAAC 1172
Query 1270 AGTGTGAAGGAGGCTGGTCTGATTCCTGACAATGTGATCTATACCATTCTTATCCAAGGG 1329
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1173 AGTGTGAAGGAGGCTGGTCTGATTCCTGACAATGTGATCTACACCATTCTTATCCAAGGG 1232
Query 1330 TATTGTAGAAAAGGTATGATCTCTGTAGCTATGAATTTGAGAAATGAAATGCTTCAGCAG 1389
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1233 TACTGTAGAAAAGGTATGATCTCTGAAGCTATGAATTTGAGAAATGAAATGCTTCAGCAG 1292
Query 1390 GGTTGTGCTATGGATGTTGTTACCTACAACACCATTTTGCATGGCTTATGCAAACGGAAA 1449
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1293 GGTTGTGCTATGGATGTTGTTACCTACAACACCATTTTGCACGGGTTATGCAAACGGAAA 1352
Query 1450 ATGTTGGGTGAAGCGGATAAATTGTTCAACGAAATGACTGAAAGGGCTTTGTTTCCAGAT 1509
|||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| |||
Sbjct 1353 ATGTTGGGTGAAGCGGATAAATTGTTCAACGAAATGACCGAAAGGGGTTTATTTCCCGAT 1412
Query 1510 TCTTATACTTTAACTATACTGATTGATGGACATTGTAAGCTCGGGAATCTGCAGAACGCA 1569
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1413 TCTTATACTTTAACTATACTGATTGATGGACATTGTAAGCTCGGAAATCTGCAGAACGCA 1472
Query 1570 ATGGAGCTCTTTCAAAAGATGAAGGAAAAGAGAATCAGACTCGATGTTGTGACATACAAC 1629
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1473 ATGGAGCTCTTTAAAAAGATGAAGGAAAAGAGAATCAAACTCGATGTTGTGACATACAAC 1532
Query 1630 ACTCTGTTAGATGGGTTTGGTAAAGTAGGCGATATCGATACAGCAAAAGAGATATGGGCA 1689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1533 ACTCTGTTAGATGGGTTTGGTAAAGTAGGCGATATCGATACAGCAAAAGAGATATGGGCA 1592
Query 1690 GATATGGTATCAAAAGAGATACTTCCCACTCCAATATC-TTACAGCATTTTGGTTAACGC 1748
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1593 GATATGGTATCAAAAGAGATACTTCCCACTCCAATATCGTT-CAGCATTTTGGTTAACGC 1651
Query 1749 GTTGTGCAGTAAAGGCCATCTGGCTGAGGCATTTCGAGTTTGGGATGAAATGATCAGTAA 1808
||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1652 GTTGTGCAGTAAAGGCCATCTTTCTGAAGCATTTCGAGTTTGGGATGAAATGATCAGTAA 1711
Query 1809 AAATATAAAGCCAACGGTAATGATTTGTAACTCTATGATAAAGGGATATTGTCGTTCTGG 1868
|| ||||||||||||||| |||||||||||||||||||||||||||||||| || |||||
Sbjct 1712 AAGTATAAAGCCAACGGTCATGATTTGTAACTCTATGATAAAGGGATATTGCCGCTCTGG 1771
Query 1869 TAATGCCTCAGATGGAGAAAGCTTTTTAGAGAAGATGATCTCGGAAGGTTTTGTGCCGGA 1928
||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct 1772 TAATGCCTCAGATGGAGAAAGCTTTTTGGAGAAGATGATCTCAGAAGGTTTTGTACCGGA 1831
Query 1929 TTGCATCAGTTACAACACATTAATATATGGTTTTGTTAGAGAAGAAAACATGAGCAAAGC 1988
||||||||||||||||||||| ||||| |||||||||| ||||||||| |||||||||||
Sbjct 1832 TTGCATCAGTTACAACACATTGATATACGGTTTTGTTAAAGAAGAAAATATGAGCAAAGC 1891
Query 1989 TTTTGGTTTGGTAAAGAAGATGGAGGAGGAGCAAGGAGGATTAGTACCTGATGTATTTAC 2048
|||||||||||| ||||||||||||||| |||||||| |||||||||||||||| |||||
Sbjct 1892 TTTTGGTTTGGTGAAGAAGATGGAGGAGAAGCAAGGAAGATTAGTACCTGATGTCTTTAC 1951
Query 2049 ATATAATTCGATCTTACATGGGTTTTGTAGACAAAATCAGATGAAAGAAGCCGAGGTTGT 2108
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1952 GTACAATTCGATCTTACATGGGTTTTGTAGACAAAATCAGATGAAAGAAGCTGAGGCTGT 2011
Query 2109 GCTAAGGAAGATGATCGAGAGAGGTGTCAATCCCGATAGGTCAACGTATACTTGTATGAT 2168
||||||||||||||||||||||||||||||||| |||||| |||||||||||| | ||||
Sbjct 2012 GCTAAGGAAGATGATCGAGAGAGGTGTCAATCCTGATAGGCCAACGTATACTTCTCTGAT 2071
Query 2169 CAATGGATTTGTTTCTCAAGATAACTTAACCGAGGCATTTCGGATTCACGATGAGATGCT 2228
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 2072 CAATGGATTTGTTTCTCAAGATAACTTAACCGATGCATTTCGGTTTCACGATGAGATGCT 2131
Query 2229 GCAAAGAGGATTCTCTCCTGATGATAAATTCTGAATCAGTAT 2270
||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2132 GCAGAGAGGATTCTCTCCTGATGATAAATTCTGAATCAGTAT 2173
Score = 241 bits (130), Expect = 2e-62
Identities = 215/252 (85%), Gaps = 21/252 (8%)
Strand=Plus/Plus
Query 2317 TATCCTAGATTGAGTTGATATTGGTGTTTTTTGGTCAAAGGACCAAAGATGTGTGTCACT 2376
|||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2171 TATCCTAGATAGAGTTGATATTGATGTTTTTTGGTCAAAGGACCAAAGATGTGTG----- 2225
Query 2377 ACTCACTACAGAAGCTCAAGGAACTTGACTTTATCGAATAGCAAAATGGTCCCCGTACTT 2436
||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 2226 --TCACTGCAGAAGCTCAAGGAACTTGACTTTCTTGAATAGCAAAATGGTCCCCGTACTT 2283
Query 2437 GAGAACATTTCATATTAGACCTCAGTTTCTTGTAATCTACCATTTAGTCCTTC-AACATT 2495
| |||||| |||||||||||||||||||||||||| |||||||||||| || || |||
Sbjct 2284 TATAACATT-CATATTAGACCTCAGTTTCTTGTAATATACCATTTAGTCAGTCCAAAATT 2342
Query 2496 TATA--------CGCATACGTTTTAATT-CTTCT--GAAATTACCAAATTTTGTTGTATT 2544
|||| ||||||| |||| || ||| | ||||||||||||| ||||| ||||
Sbjct 2343 TATAGTTTTATACGCATAC-TTTTCTTTTCTTTTTTGAAATTACCAAATATTGTTTTATT 2401
Query 2545 TAGTCAAATTAT 2556
||||||||||||
Sbjct 2402 TAGTCAAATTAT 2413
Score = 58.4 bits (31), Expect = 3e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 2569 TCATAAGTAAAATATATGAAAGTTGAAACAG 2599
|||||||||||||||||||||||||||||||
Sbjct 2413 TCATAAGTAAAATATATGAAAGTTGAAACAG 2443
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98349012590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5