BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01120.1
Length=1758
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892101 jgi|Araly1|892101|Al_scaffold_0006_97 2218 0.0
Ahg331073 jgi|Araly1|331073|fgenesh1_pm.C_scaffold_8000416 1386 0.0
> Ahg892101 jgi|Araly1|892101|Al_scaffold_0006_97
Length=1551
Score = 2218 bits (1201), Expect = 0.0
Identities = 1439/1552 (93%), Gaps = 23/1552 (1%)
Strand=Plus/Plus
Query 85 ATGTCAGACGATTTCGAGAATTCGGTGATAAACTTGAAGCTGCTCATAGATGAAGAGAAA 144
|||||||| ||||| |||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1 ATGTCAGATGATTTGGAGAATTCGGTGATTAACTTGAAGCTACTCATAGATGAAGAGAAA 60
Query 145 AACAAAGTTGTATTCGCTGAGGCGGGTAC-AGATTTTGTCGATATACTCTTTAGCTTTTC 203
||||||||||||||||||||||| ||| | |||||| |||||||||||||||||||||||
Sbjct 61 AACAAAGTTGTATTCGCTGAGGCTGGT-CAAGATTTCGTCGATATACTCTTTAGCTTTTC 119
Query 204 GACTTTGCCTATGGGAACAATTGTTAGATTGCTGGAGATGCATCACAAGTC-ACGCTCAA 262
||||||||| ||||||||||||||||||||||||||||||||||||||||| | | |||
Sbjct 120 GACTTTGCCAATGGGAACAATTGTTAGATTGCTGGAGATGCATCACAAGTCAAAG-GCAA 178
Query 263 TAGCCATTGGTTGTTTCAACAACATCTATGCAAGTGTTGTGAGTATGGGAATGAAGCATT 322
||||| | ||||||||||| |||||||||| |||||||| |||||||||||||||||||
Sbjct 179 TAGCCGTAGGTTGTTTCAATAACATCTATGGGAGTGTTGTTAGTATGGGAATGAAGCATT 238
Query 323 TCAGTACTCAAGCTTGCAAGCAAATGCTTTTGTTTCCTGGGAGTTTGAATCAGGACAAAT 382
|||||||| |||||||||||||||||||||||| ||| ||||||||||||||||| ||||
Sbjct 239 TCAGTACTGAAGCTTGCAAGCAAATGCTTTTGTATCCGGGGAGTTTGAATCAGGAGAAAT 298
Query 383 GTCAAAATATGAAGCTGAAGATAGATGATTCCGAGGCTACCAAGTGTTTCATGTGTCCTA 442
||||||| || ||||||||||| ||||||||||||||||| || ||||||||||| ||||
Sbjct 299 GTCAAAAGATTAAGCTGAAGATTGATGATTCCGAGGCTACTAAATGTTTCATGTGCCCTA 358
Query 443 TGTTTGTGCGAAGCGGACAATGCAGCAAAGGCTATAGCAATTTTAAGACCTCTAGGTGTA 502
|||||||||||||||||||||| || ||||| |||||||||||||| ||||| |||||||
Sbjct 359 TGTTTGTGCGAAGCGGACAATGTAGTAAAGGGTATAGCAATTTTAATACCTCGAGGTGTA 418
Query 503 GCTGTGGGAATTTCATGGATG-AGGTGATTCAGTTTCAAGGAGAAGGTGGCC---G-A-- 555
||||||||||||| ||||||| | ||||||||||||||||||||||| |||| | |
Sbjct 419 GCTGTGGGAATTTGATGGATGCA-GTGATTCAGTTTCAAGGAGAAGGAGGCCGAGGAAGC 477
Query 556 ---GGAAATGGT-TCTCAAGCTGAAGTATTTGTGAGGGGTGCTCATACTTCATTCATAAT 611
||||| ||| | | ||| || ||||||||||||| || ||||||||||||||||||
Sbjct 478 GTGGGAAAAGGTGT-TGAAGGTGGAGTATTTGTGAGGAATGGTCATACTTCATTCATAAT 536
Query 612 CACTGATGATTTGAAAGTGCAAGTTAACTCTGTTGGGTCAACGCTTAATGTTCTTAAAGA 671
|||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 537 CACTGATGATTTGAAAGTGCAAGTTAACTCAGTTGGGTCAACACTTAAGGTTCTTAAAGA 596
Query 672 TCTTGCCTATGCAGATTGCGATAAGTTGGTTGAAATGATTCTTGAGGTGAATCTCCAAGA 731
||||| ||||||||||||| |||||||||||||||||||||| ||||| |||||||||||
Sbjct 597 TCTTGGCTATGCAGATTGCAATAAGTTGGTTGAAATGATTCTCGAGGTTAATCTCCAAGA 656
Query 732 GGTAGCGACTTTGCTGGTGTGTTTGTTCACATCGGATACTCCATTGACCGATACATTTCT 791
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 657 GGTAGCGACTTTGCTGGTGTGTTTATTCACATCGGATACTCCATTGAGCGATACATTTCT 716
Query 792 GAAAAAGAAAAGCTCACATGGTATGAACAGGATTCATAAAAGGCCGAGTCCTTCTCTCAG 851
|||||||||||||||| ||||||||| | |||||||||| |||||||||||||||||||
Sbjct 717 GAAAAAGAAAAGCTCATGTGGTATGAAGAAGATTCATAAATGGCCGAGTCCTTCTCTCAG 776
Query 852 TGAAGATAGAGAGGAAACAAAAGCTGATCAAACGATAATGCTCAATGCGTATGTTAGGAA 911
||| |||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||
Sbjct 777 TGAGGATAGAGAGGAAACAAAAGCTGATCAAACGATAACGCTGAATGCATATGTTAGGAA 836
Query 912 GGAGGAAGGGAACATTCTATATGTTGAATGTGGTGACGACTTTGTTGATCTTCTTTTCTC 971
||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 837 GGAAGAAGGGAGCATTCTATATGTTGAATGTGGTGAAGACTTTGTTGATCTTCTTTTCTC 896
Query 972 TTTCCTTGCTATGCCTCTGGAATCTGTATGGGACATCTCGGGCAGAGGAATCATCCTTGG 1031
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 897 TTTTCTTGCTATGCCTCTGGAATCTGTATGGGAAATCTCGGGCAGAGGAATCATCCTTGG 956
Query 1032 ATGCATTGGAAACTTGTGCAAAAGCTTCAAGGATTTGAGTAG-TGCTTCCGCAACTGAAG 1090
|||||||||||||||||||||||||||||||||||||||| | || ||||| || ||||
Sbjct 957 ATGCATTGGAAACTTGTGCAAAAGCTTCAAGGATTTGAGT-GTTGATTCCGGAAGAGAAG 1015
Query 1091 CTTCAGCTTTTAAATGTGTTCTTCCTCATTACTACAAGTGCCAGAAGCAGCTGCTAAATG 1150
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1016 CTTCAGCTTTTAAATGTGTTCTTCCTCATTACTACAAGTGTCAGAAGCAGCTGCTAAATG 1075
Query 1151 ATGTTGTCACAACCCATCAGCCACCAACTTATTACCGTTTTGTATCGTTCTCTGCGGATC 1210
| |||||||| ||||| |||||||||||||||||||||||| |||| ||||||| |||||
Sbjct 1076 AGGTTGTCACTACCCAGCAGCCACCAACTTATTACCGTTTTTTATCCTTCTCTGTGGATC 1135
Query 1211 ATTTTCGAGAGTACCGTTTGTCTGAAAACTCTGGTAAGCGACTTGTGTATGACTGGGATA 1270
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 ATTTTAGAGAGTACTGTTTGTCTGAAAACTCTGGTAAGCGACTTGTGTATGACTGGGATA 1195
Query 1271 AACTCGTGCCTGTGACTTCGATAGATCCGAAAA--CC-GAAGGCAACAACACTGCTGAAA 1327
||||||||||||||||||||||||| || |||| || ||||||||| |||||||||||
Sbjct 1196 AACTCGTGCCTGTGACTTCGATAGACCCAAAAAAACCCGAAGGCAACGACACTGCTGAAT 1255
Query 1328 CAAGTGGATTTGTGAAGAGAGGGACAAAGTTCATGGTGACAGATGATCTGATCATTAATC 1387
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1256 CAAGTGGATTTGTGAAGAGAGGGACAAAGTTCATGGTGACAGATGATCTGATCATCACTC 1315
Query 1388 CTTCGAACTCAACCTCAACCATTGGATTCTTAAAGGAGAAACAGACTCGACTAGATGAAG 1447
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1316 CTTCGAACTCAACCTCAACCATTGGATTCTTAAAGGAGAAACAGACCCGACTAGATGAAG 1375
Query 1448 TTGAAATTCGAGTGATCAATATGACAAAAGAAGAGGCCATCAGATTATTGGGAGCTTCAA 1507
| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1376 TGGAAATACGAGTGATCAATATGACAAAAGAAGAGGCCATCATATTATTGGGAGCTTCAA 1435
Query 1508 TGGTGACATCCTCTGCCTTAAGCACTGGTCTGCTAGCTATGGAATCAGCTTCAACAAGTG 1567
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1436 TGGTGACATCCTCTGCCTTAAGCACTGGTCTGCTAGCTATAGAATCAGCTTCAACAAGTG 1495
Query 1568 ATCCTAAATGCCGGTTTTTTAAGAAGCCGAAGATTGAGACAGAGACTTGAGA 1619
||||| |||||||||| ||||||||||||||||||||| | |||||| ||||
Sbjct 1496 ATCCTCAATGCCGGTTCTTTAAGAAGCCGAAGATTGAGTCTGAGACT-GAGA 1546
> Ahg331073 jgi|Araly1|331073|fgenesh1_pm.C_scaffold_8000416
Length=1542
Score = 1386 bits (750), Expect = 0.0
Identities = 1310/1570 (83%), Gaps = 79/1570 (5%)
Strand=Plus/Plus
Query 85 ATGTCAGACGATTTCG-AGAATTCGGTGATAAACTTGAAGCTGCTCATAGATGAAGAGAA 143
|||||||| | ||| | ||||| ||||||| || ||||| || |||||||||||||||||
Sbjct 1 ATGTCAGATGCTTT-GAAGAATCCGGTGATTAAGTTGAAACTACTCATAGATGAAGAGAA 59
Query 144 AAACAAAGTTGTATTCGCTGAGGCGGGTACAGATTTTGTCGATATACTCTTTAGCTTTT- 202
|||||| ||||||||||||||| |||||| |||||||||||||||||||||||| ||||
Sbjct 60 AAACAAGGTTGTATTCGCTGAGACGGGTAAAGATTTTGTCGATATACTCTTTAG-TTTTA 118
Query 203 CGACTTTGCCTATGGGAACA-ATTGTTAGATTGCTGGAGATGCATCACAAGTCACGCTCA 261
||| ||||| ||||||| | |||||||||||| ||||||||||||| ||||||| |||
Sbjct 119 TGACGTTGCCAATGGGAA-AGATTGTTAGATTGATGGAGATGCATCAGAAGTCACAATCA 177
Query 262 ATAGCCATTGGTTGTTTCAACAACATCTATGCAAGTGTTGTGAGTATGGGAATGAAGCAT 321
||| | || || ||||||||||| ||||||| ||||||| |||||||||| |||||||||
Sbjct 178 ATATCAATAGGCTGTTTCAACAATATCTATGGAAGTGTTTTGAGTATGGGCATGAAGCAT 237
Query 322 TTCAGTACTCAAGCTTGCAAGCAAATGCTTTTGTTTCCTGGG-AGTTTGAATCAGGACAA 380
||||| ||| ||||||| |||||||||||||||| ||| ||| |||||||||||||| ||
Sbjct 238 TTCAGGACTGAAGCTTGTAAGCAAATGCTTTTGTATCC-GGGCAGTTTGAATCAGGAGAA 296
Query 381 ATGTCAAAATATGAAGCTGAA-GATAGATGATTCCGAGGC-TACCAAGTGTTTCATGTGT 438
||||| ||| | ||| | || |||||||||||| || || ||| ||||||||||| ||
Sbjct 297 ATGTCGAAACCTCAAGAT-AAGGATAGATGATTCTGA-GCGTACAAAGTGTTTCATATGC 354
Query 439 CCTATGTTTGTGCGAAGCGGACAATGCAGCAAA-GGCTATAGCAATTTTAAGACCTCTAG 497
|||||||||| ||||||||| ||||| | ||| || |||||||||||||| || || ||
Sbjct 355 CCTATGTTTGAGCGAAGCGGGCAATGTTGTAAATGG-TATAGCAATTTTAATACATCGAG 413
Query 498 GTGTAGCTGTGGGAATTTCATGGATGAGGTGATTCAGTTTCAAGGAGA---AGGT-G-GC 552
||||||||||||||||| |||||||| |||||||||||||||||||| || | | ||
Sbjct 414 ATGTAGCTGTGGGAATTTGATGGATGAAGTGATTCAGTTTCAAGGAGAGGGAGTTGGAGC 473
Query 553 --C-G-AGGAAATGGTTCTCAAGCTGAAGTATTTGTGAGGGGTGCTCATACTTCATTCAT 608
| | |||||||||| || ||| || ||||||||||||| ||| ||||||||||||| |
Sbjct 474 TACAGTAGGAAATGGTGCTGAAGGTGGAGTATTTGTGAGGAGTGATCATACTTCATTCGT 533
Query 609 AATCACTGATGATTTGAAAGTGCAAGTTAACTCTGTTGGGTCAACGCTTAATGTTCTTAA 668
|||||| ||||||||||||||| |||||| |||||||| || ||| ||||| ||||||||
Sbjct 534 AATCACCGATGATTTGAAAGTGGAAGTTAGCTCTGTTGAGTTAACACTTAACGTTCTTAA 593
Query 669 AGATCTTGCCTATGCAGATTGCGATAAGTTGGTTGAAATGATTCT-TGAGGTGAATC-TC 726
|||||||| ||| | ||||| ||||||||||||| |||||| | | | || | ||
Sbjct 594 AGATCTTGGCTACACTGATTGTAATAAGTTGGTTGAGATGATT-TACAACTTTAA-CTTC 651
Query 727 CAAGAGGTAGCGACTTTGCTGGTGTGTTTGTTCACATCGGATACTCCATTGACCGATACA 786
|||||||||| |||||| ||| ||| || ||||||||||||||||||||||||||||||
Sbjct 652 GAAGAGGTAGCAACTTTGTTGGAGTGCTTATTCACATCGGATACTCCATTGACCGATACA 711
Query 787 TTTCTGAAAAAGAAAAGCTCACATGGTATGAACAGGATTCATAAAAGGCCGAGTCCTTCT 846
||||||||||||||||||||| |||| ||||| || ||||| ||| || ||||||| |
Sbjct 712 TTTCTGAAAAAGAAAAGCTCATATGGCATGAAGAGAATTCACAAACCGCTGAGTCCTGCC 771
Query 847 CTCAGTGAAGATAGAGAGGAAACAAAAGCTGATCAAACGATAATGCTCAATGCGTATGTT 906
||| ||||||| ||||||||| ||||||||||||||||||| | ||| ||||| ||||||
Sbjct 772 CTCCGTGAAGAAAGAGAGGAATCAAAAGCTGATCAAACGATTACGCTAAATGCCTATGTT 831
Query 907 AGGAAGGAGGAAGGGAACATTCTATATGTTGAATGTGGTGACGACTTTGTTGATCTTCT- 965
|||||| |||||||||||||||| | |||||||||||| || || ||||||||||||||
Sbjct 832 AGGAAGAAGGAAGGGAACATTCTGTTTGTTGAATGTGGCGAAGATTTTGTTGATCTTCTC 891
Query 966 TTT-CTCTTTCCTTGCTATGCCTCTGGAATCTGTATGGG-ACATCTCGGGCAGA-GGAAT 1022
||| || |||| ||||||||||||| ||||||||||||| | || | |||| | |||||
Sbjct 892 TTTACT-TTTC-TTGCTATGCCTCTAGAATCTGTATGGGGA-ATAGCTGGCA-ATGGAAT 947
Query 1023 CATCCTTGGATGCATTGGAAACTTGTGCAAAAGCTTCAAGGATTTGAGTAGTGCTTCC-G 1081
|||| |||||||||||||||||||||||| |||||| |||||||| |||| || ||| |
Sbjct 948 CATCTTTGGATGCATTGGAAACTTGTGCAGAAGCTTTAAGGATTTAAGTATTGTTTCTAG 1007
Query 1082 CAACTGAAGCTTCAGCTTTTAAATGTGTTCTTCCTCATTACTACAAGTGCCAGAAGCAGC 1141
| || | |||| |||||||| |||||||| ||||||||||| || |||||||
Sbjct 1008 TA---GA-GA---AGCT---AAATGTGTACTTCCTCACTACTACAAGTGTCATAAGCAGC 1057
Query 1142 TGCTAAATGATGTTGTCACAACCCATCAGCCACCAACTTATTACCGTTTTGTATCGTTCT 1201
| || ||||||||||||| ||||| ||||||||||||| ||| ||| ||| || ||||
Sbjct 1058 TTCT---TGATGTTGTCACACCCCATGAGCCACCAACTTACTACAGTTATGTTTCCTTCT 1114
Query 1202 CTGCGGATCATTTTCGAGAGTACCGTTTGTCTGAAAACTCTGGTAAGCGACTTGTGTATG 1261
| | |||||||||| |||||||| ||||||||||||||||| ||||| |||||| ||||
Sbjct 1115 CCGTGGATCATTTTAGAGAGTACAATTTGTCTGAAAACTCTGATAAGCCACTTGTTTATG 1174
Query 1262 ACTGGGATAAACTCGTGCCTGTGACTTCGATAGATCCGAAAACC-GAAGGCAAC---AAC 1317
| ||||||||||| ||||| |||| |||||||||||| |||| | ||||| | |||
Sbjct 1175 AGTGGGATAAACTTGTGCCCGTGATTTCGATAGATCC-AAAATCTGAAGGTGATGGTAAC 1233
Query 1318 ACT-GC--TGA---AACAA------GTGG---ATTTGTGAAGAGAGGGACAAAGTTCATG 1362
||| | ||| ||||| |||| |||| ||||||||||||||||||| |||
Sbjct 1234 ACTAGTGATGAGTCAACAACATCTAGTGGTGGATTTATGAAGAGAGGGACAAAGTTTATG 1293
Query 1363 GTGACAGATGATCTGATCATTA-ATCCTTCGAACTCAACCTCAACCATTGGATT-CTTAA 1420
|||||||||||| ||||||||| | ||||| || |||||||||||||||||| | || ||
Sbjct 1294 GTGACAGATGATTTGATCATTACA-CCTTCAAATTCAACCTCAACCATTGGACTGCT-AA 1351
Query 1421 AGGAGAAACAGACTC-GACTAGATGAAGTTGAAATTCGAGTGATCAATATGACAAAAGAA 1479
|||| |||||| || | |||| || ||||| |||| |||||||| || | ||||||
Sbjct 1352 AGGAAAAACAGG-TCCGGTTAGACGATGTTGAGATTCAAGTGATCACCATTAGGAAAGAA 1410
Query 1480 GAGGCCATCAGATTATTGGGAGCTTCAATGGTGACATCCTCTGCCTTAAGCACTGGTCTG 1539
|||||||| || ||||| | ||||||| ||||||||| ||||||||||||||| ||||
Sbjct 1411 GAGGCCATTAGGTTATTAGAAGCTTCATTGGTGACATTTTCTGCCTTAAGCACTAGTCTT 1470
Query 1540 CTAGCTATGGAA-TCAGCTTCAACAAGTGATCCT-AAATGCCGGTTTTTTAAGAAGCCGA 1597
|||||||||||| | ||||||||||||| |||| ||| |||| ||||||||||||| |
Sbjct 1471 CTAGCTATGGAAATT-GCTTCAACAAGTGTTCCTCAAA-GCCGACTTTTTAAGAAGCCAA 1528
Query 1598 AGATTGAGAC 1607
||||||||||
Sbjct 1529 AGATTGAGAC 1538
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65972304340
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5