BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01140.1
Length=1422
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486966 jgi|Araly1|486966|fgenesh2_kg.6__100__AT5G01140.1 1293 0.0
Ahg939564 jgi|Araly1|939564|scaffold_600108.1 937 0.0
> Ahg486966 jgi|Araly1|486966|fgenesh2_kg.6__100__AT5G01140.1
Length=1269
Score = 1293 bits (700), Expect = 0.0
Identities = 865/942 (92%), Gaps = 22/942 (2%)
Strand=Plus/Plus
Query 85 GGAACAATCGTCAGATTGCTTGCA-AAGCATCGAAAGTCTGA-TCCAGTTACTATTGGAT 142
||||||||||| |||||||||| | ||||||||||||||||| | |||||||||| ||||
Sbjct 4 GGAACAATCGTTAGATTGCTTG-AGAAGCATCGAAAGTCTGAGT-CAGTTACTATAGGAT 61
Query 143 GTCTTAGAAACCTTTATACAAGTGTTGTGGACATGGAA-CTTGATGATTTTGAGACTGAT 201
||||||| |||||||||||||||||||||||||| ||| ||||| |||||||||||||
Sbjct 62 GTCTTAGCAACCTTTATACAAGTGTTGTGGACAT-GAAGATTGATCATTTTGAGACTGAA 120
Query 202 GCTTGTAAGCAGATGTTGCTTTATCCCAAGAACATTAGGGAGGCTCAATACAGAAACTTT 261
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 GCTTGTAAGCAGATGTTGCTTTATCCCAAGAACATTAGGGAAGCTCAATACAGAAACTTT 180
Query 262 AAGCTCAACATTGACACTAATGAAAGCTTAAAGTGTTTTGGTTGCCGATTTTTC-TCAAT 320
||||||||||||||| ||||||||||||| ||||| ||||| | |||| |||| || |
Sbjct 181 AAGCTCAACATTGACCCTAATGAAAGCTTCAAGTGCTTTGGGCGTCGATGTTTCTTC-TT 239
Query 321 CTGCAGAATGTGCAGTAATTTCAACACGTCCCTATGTAAATGCGGAAAGCTGATGAATGA 380
||| |||||||| |||||||| ||||||||||||||||| || |||||| ||||||||||
Sbjct 240 CTGTAGAATGTGTAGTAATTTTAACACGTCCCTATGTAAGTGTGGAAAGATGATGAATGA 299
Query 381 GGAGATAAGTTTCTTAGAATATGAGGAAAATGATGTCGAAGGAGTATTTATGAGAGACAA 440
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 300 GGAGATAAGTTTTTTAGAATATGAGGAAAATGATGTCGAAGGAGTGTTTATGAGAGACAA 359
Query 441 GTCGTCATTTATCATAACCGATGACTTGAGACTCACGGATGATTCTACTAGTTCTCTCTT 500
|||||| |||||||||||||||||||||||| |||||||||| |||||| ||||||||||
Sbjct 360 GTCGTCGTTTATCATAACCGATGACTTGAGAGTCACGGATGACTCTACTGGTTCTCTCTT 419
Query 501 GCAAACACTCAAAGATCTTGGTTGTGCTGATGTTAGTAAGCTAAGAGAGCAGGTTCTTGA 560
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 420 GCAAACACTCAAAGATCTTGGTTGTGCTGATGTTAGTAAGCTGAGAGAGCAGGTTCTTGA 479
Query 561 TATCGGTCTCAAGGAGGTTATGACTTTGATGCAATGTGTTTTCACCTCAAATACACCTTT 620
||||||| |||| ||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 480 TATCGGTTTCAAAGAGGTTATGACTTTGCTGCAATGTGTATTCACCTCAAATACACCTTT 539
Query 621 GACGGATGCTTTCTTGAAGAATCAAAGTTCAAACACGGTGAGGAAGATTTATAGAAAGCT 680
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 540 GACGGATACTTTCTTGAAGAATCAAAGTTCAAACACGGTGAGGAAGAGTTATAGAAAGCT 599
Query 681 GAGTGATGATAAAGGAGATGAAGCAGAACCAGACAAAGTTATAACTATTGATGCTATAGT 740
| | | | | | ||||||||||| |||||||||||||||| |||||||||| ||
Sbjct 600 G-G--A-G-----G-A--TGAAGCAGAACAAGACAAAGTTATAACTTTTGATGCTATCGT 647
Query 741 AAGGAAACAGGACATGAAGATTTTGTACGTTGAGTGCGGTGAAGACTTTGTTGATCTTCT 800
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 AAGGAAACAAGACATGAAGATTTTGTACGTTGAGTGCGGTGAAGACTTTGTTGATCTTCT 707
Query 801 TTTCACTTTTCTCGCCATTCCGTTGGAGTCTATATGGGAAATCTCTGGTAACAGTATTAC 860
|||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||| ||
Sbjct 708 TTTCACTTTTCTCGCCATTCCGTTGGAGTCTACATGGGAAATCTCTGGCAACAATATCAC 767
Query 861 AATAGGTCGCATTGGGAACTTGTTCAGAAGCTTCAAAGACTTGAGTGATAATGAAGTGTT 920
| ||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 768 ATTAGGTCGTATTGGGAACTTGTGCAGAAGCTTCAAAGACTTGAGTGCTAATGAAGTGTT 827
Query 921 ATCAGCATCCAAATGTATGATTCCGTATTATTATAGGTGCCAGAAACAGTTGCTCAAAAT 980
||| |||| |||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 828 GTCAACATCTAAATGTATGATTCCGTATTATTATAGGTGCAAGAAACAGTTGCTCAATAT 887
Query 981 AAGAACTCCTACACCACGGGTTTACTTAGGACA-CTGTTATT 1021
|||| |||||||||||||||||||||| ||| | ||||||
Sbjct 888 CAGAAATCCTACACCACGGGTTTACTTAA-ACAGCAGTTATT 928
Score = 429 bits (232), Expect = 3e-119
Identities = 261/275 (95%), Gaps = 2/275 (1%)
Strand=Plus/Plus
Query 1150 GGGACAAAG--TTTATTGTGTCAGATGATCTTATTGTAACACCTAAGATTTCTAGCTCAA 1207
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 995 GGGACAAAGTTTTTTTTGTGTCAGATGATCTTATTGTAACACCTAAGATTTCTAGCTCAA 1054
Query 1208 CATTTTCCGTGTTGAAGAAGTTTCAGATTCTCACAGATGATTTGGAGGTGCAAGCAATTA 1267
||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1055 CATTTTCTATGTTGAAGAAGTTTCAGATTCTCACTGATGATTTGGAGGTGCAAGCAATTA 1114
Query 1268 CCATCAGCAATGCAGATGCTTTGAATCTGTTGGGAGCTTCATTGGTGACATCCTCTGCTT 1327
|||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1115 CCATCAGCAATGCAGAGGCTTTGAATCTGTTGAGTGCTTCATTGGTGACATCCTCTGCTT 1174
Query 1328 TGAGCTCTGCTTTTGGGAATTTGATTGTGAAGAAACCGAAGGAAGAGAATGTTTCATGGA 1387
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||
Sbjct 1175 TGAGCTCTGCTTTTGGGAATTTGATTGTAAAGAAACCGAAGGAAGAGACTGTTTCGTGGA 1234
Query 1388 ACCCGGTTTCAAAGAAACCAAAGGTTGAGACTTGA 1422
|||| |||||||||||||||||||| |||||||||
Sbjct 1235 ACCCTGTTTCAAAGAAACCAAAGGTAGAGACTTGA 1269
Score = 99.0 bits (53), Expect = 8e-20
Identities = 59/62 (95%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 1053 TTTGACTACAAAACGTACTACAAAGCGCATGACTTTTGTGGATCCAAAATCTGATTGTTG 1112
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 930 TTTGACTACAAAACATACTACAAGGCGCATGACTTTTGTGGATCCAAAATCTGATTATTG 989
Query 1113 TG 1114
||
Sbjct 990 TG 991
> Ahg939564 jgi|Araly1|939564|scaffold_600108.1
Length=1547
Score = 937 bits (507), Expect = 0.0
Identities = 1122/1405 (80%), Gaps = 98/1405 (7%)
Strand=Plus/Plus
Query 85 GGAACAATCGTCAGATTGCTTGCAAAGCATCGAAAG--TCTGATCCAGTTACTATTGGAT 142
|||||||||||| || |||||| ||||||| ||| ||||| |||||||| ||||||
Sbjct 154 GGAACAATCGTCCGACTGCTTGGGAAGCATC--AAGTCTCTGAGCCAGTTACCGTTGGAT 211
Query 143 GTCTTAGAAACCTTTATACAAGTGTTGTGGACATGGAACTTGATGATTTTGAGACTGATG 202
|| |||| ||||||||||||||||||||||||||| || ||||||||||||||||||| |
Sbjct 212 GTATTAGCAACCTTTATACAAGTGTTGTGGACATGAAAATTGATGATTTTGAGACTGAAG 271
Query 203 CTTGTAAGCAGATGTTGCTTTATCCCAAG-A--ACATTAGGGAGGCTCAATACAGAAACT 259
||||||||||||||||||||||||||| | | || ||||||| ||||||| |||||| |
Sbjct 272 CTTGTAAGCAGATGTTGCTTTATCCCAGGAATTACGTTAGGGAAGCTCAATGCAGAAAGT 331
Query 260 TTAAGCTCAACATTGACACTAATGAAAGCTTAAAGTGTTTTGGTTGCCGATTTTTCTCAA 319
||||||||||||| || ||| ||||| ||| ||||| ||||| ||| | | |||| | |
Sbjct 332 TTAAGCTCAACATAAACCCTACTGAAAACTTCAAGTGCTTTGGGTGCAGCTCTTTCCCTA 391
Query 320 TCTGCAGAATGTGCAGTAATTTCAACACGTCCCTATGTAAATGCGGAAAGCTGATGAATG 379
|||| ||||||||||||||| ||||| |||| ||||| ||||| ||| ||||| |
Sbjct 392 GCTGCTCAATGTGCAGTAATTTTAACACCTCCCGATGTAGGTGCGGTAAGTTGATG-ACC 450
Query 380 A-GGAGA-TAAGTTT-CT------T-A-GA-AT-A-TG-A-G------G-AAAATGATGT 416
| ||||| | | ||| || | | || | | || | | | |||||||| |
Sbjct 451 AGGGAGATTGA-TTTACTAGAAGATGAGGAGGTCATTGTAGGCATCATGCAAAATGATCT 509
Query 417 -CGAAGGAGTATTTATGAGAGACAAGTCGTCATTTATCATAACCGATGACTTGAGACTCA 475
|| ||||||||||| ||||||| ||||||||||||||||||||| ||||| | ||| |
Sbjct 510 CCG-TGGAGTATTTATCAGAGACAGGTCGTCATTTATCATAACCGACGACTTAAAACTGA 568
Query 476 CGGATGATTCTACTAGTTCTCTCTTGCAAACACTCAAAGATCTTGGTTGTGCTGATGTTA 535
| | ||| ||||||||||||||||||||||| ||||| | |||||||| | |||||||||
Sbjct 569 CAGTTGACTCTACTAGTTCTCTCTTGCAAACGCTCAAGGCTCTTGGTTTTTCTGATGTTA 628
Query 536 GTAAGCTAAGAGAGCAGGTTCTTGATATCGGTCTCAAGGAGGTTATGACTTTGATGCAAT 595
||||||| ||||| | ||||||||||||||||||||| |||||| |||||||| ||| ||
Sbjct 629 GTAAGCTGAGAGAACGGGTTCTTGATATCGGTCTCAAAGAGGTTTTGACTTTGCTGCGAT 688
Query 596 GTGTTTTCACCTCAAATACACCTTTGACGGATGCTTTCTTGAAGAATCAAAGTTCAAACA 655
|||| ||| |||||| | | || ||||| || ||||||||||||||||||||| | |||
Sbjct 689 GTGTATTCTCCTCAAGTTCTCCCTTGACAGACACTTTCTTGAAGAATCAAAGTTTACACA 748
Query 656 CGGTGAGGAAGATTTATAGAAA-GCTGAG----TG-AT-GA-TA-AA-GGAGATGAAGCA 705
||||||||||||||||| ||| |||||| || | || | || ||||||||||||
Sbjct 749 AGGTGAGGAAGATTTATA-AAAGGCTGAGTCCATGCTTGGAGAAGAACGGAGATGAAGCA 807
Query 706 GAACCAGACAAAGTTATAACTATTGATGCTATAGTAAGGAAACAGGACATGAAGATTTTG 765
|||| ||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 808 GAACAAGACAAAGTAATAACTTTTGATGCAATAGTAAGGAAACAGGACATGAAGATTTTG 867
Query 766 TACGTTGAGTGCGGTGAAGACTTTGTTGATCTTCTTTTCACTTTTCTCGCCATTCCGTTG 825
|| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 868 TATGTTGAGTGCCGTGAAGACTTTGTTGATCTTCTTTTAACTTTTCTCGCCATTCCACTG 927
Query 826 GAGTCTATATGGGAAATCTCTGGTAA-CAGTATTACAATAGG-TCGCATTGGGAACTTGT 883
|| |||||||||||| ||||||| || || ||||| |||| | || ||||||||||
Sbjct 928 GAATCTATATGGGAAGTCTCTGGCAACCA-TATTAGTTTAGGAT-GCGTTGGGAACTTAA 985
Query 884 TCAGAAGCTTCAAAGACTTGAGTGATAATG-AAGTGTTATC-A--G-C--ATCC-AAATG 935
|||||||||||| |||||||||||||||| ||| | | | | | | |||| ||||
Sbjct 986 GCAGAAGCTTCAAGGACTTGAGTGATAATGAAAG-GACA-CAAGTGTCAAATCCGAAAT- 1042
Query 936 T-ATGATTCCGTATTATTATAGGTGCCAGAAACAGTTGCTCAAAATAAGAAC-TCCTACA 993
| || |||||||||| ||||| |||||||| ||||||||||| || | || | | | |
Sbjct 1043 TCGTGCTTCCGTATTACTATAGTTGCCAGAATCAGTTGCTCAATATCATCACTTTC-AAA 1101
Query 994 CCACGGGTTTACTTAGGACACTGTTATTCCAAGACACTGTCTTATTCTCAAAGC-TT-T- 1050
|||| | ||||| || || | | | | | | | | | | ||| || | | || |
Sbjct 1102 CCACAGTTTTACGTA--AC-C----A-T-C-A-ATAGGGACAT-TTC-CAGACCGTTGTG 1148
Query 1051 -TATTTGACTACAAAACGTA-CTACAAAGCGCA-TGACTTTTGTGGATCCAAAAT-CTGA 1106
| | |||||||||| | | || | | | | ||| |||| | |||||||||| | |
Sbjct 1149 CTGTGTGACTACAAAGCCAACCTTTATA-C-AAGTGAGTTTTATTGATCCAAAATAC-AA 1205
Query 1107 TTGTTGT-GGTC-G-GTCAAAAGATGGTA-AGG-GGTTT-GTGAAGAGAGGGACAAAGTT 1160
| | | || | |||| ||| |||| || ||||| ||||||||| |||||||
Sbjct 1206 TGGCCATCATTCAGTTTCAACAGAAGGTAGTGGTGGTTTCATGAAGAGAGATTCAAAGTT 1265
Query 1161 TATTGTGTCAGATGATCTTATTGTAACACCTAAGATTTCTAGC-TCAACATTTTCCGTGT 1219
|| || ||||||||||| || | ||||||||| ||| | ||||| |||| | |
Sbjct 1266 TACGGTATCAGATGATCTGGTTATTGCACCTAAGAACACTA-CTTCAACCTTTTGGGCAT 1324
Query 1220 TGAAGAAGTTTCAGATTCTCAC-AGATGATTTGGAGGTGCAAGCAA-TTACCATCAGCAA 1277
| |||||| | ||||||| ||| | | ||| | ||||||||| || ||| |||||||||
Sbjct 1325 TAAAGAAGCTGCAGATTCACACTA-ACGATATAGAGGTGCAA-AAAGTTAGCATCAGCAA 1382
Query 1278 TGCAGATGCTTTGAATCTGTTGGGAGCTTCATTGGTGACATCCTCTGCTTTGAGCTCTGC 1337
|| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1383 AGCTCATGCTTTGAATCTGTTGAGAGCTTCAGTGGTGACATCCTCTGCTTTGAGCTCTGC 1442
Query 1338 TTTTGGGAATTTGATTGTGAAGAAACCGAAGGAAGAGAATGTTTCATGGAACCCGGTTTC 1397
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1443 TTTTGGGAATTTGATTGTAAAGAAACCCAAGGAAGAGAATGTTTCATGGAACCCGGTTTC 1502
Query 1398 AAAGAAACCAAAGGTTGAGACTTGA 1422
|||||||| |||||| |||||||||
Sbjct 1503 AAAGAAACTAAAGGTAGAGACTTGA 1527
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53173982020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5