BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G01150.1 Length=1674 Score E Sequences producing significant alignments: (Bits) Value Ahg486965 jgi|Araly1|486965|fgenesh2_kg.6__99__AT5G01150.1 2067 0.0 Ahg939564 jgi|Araly1|939564|scaffold_600108.1 433 2e-120 Ahg892358 jgi|Araly1|892358|Al_scaffold_0006_354 403 2e-111 Ahg486966 jgi|Araly1|486966|fgenesh2_kg.6__100__AT5G01140.1 141 2e-32 > Ahg486965 jgi|Araly1|486965|fgenesh2_kg.6__99__AT5G01150.1 Length=1578 Score = 2067 bits (1119), Expect = 0.0 Identities = 1405/1543 (91%), Gaps = 20/1543 (1%) Strand=Plus/Plus Query 1 ATGGCTAAAAGTAGTGAGGAGCCTAAGTTTTCTTTGAGACTTATTGTTGATGAAGAGAAA 60 |||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||| Sbjct 1 ATGGCTAAAAGTTCTGAGGAGCCTAAGTTTACTTTGAGACTTATTGTTGATGAGGAGAAA 60 Query 61 AACAAGGTTGTTTTGGCTGAAGCTTGTAGGGATTTTGTTGATGTACTCTTCAGCCTTCTG 120 |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 61 AACAAGGTCGTTTTGGCTGAAGCTTGTAGGGAATTTGTTGATGTACTCTTCAGCCTTCTG 120 Query 121 ACACTTCCAATGGGAACCATTGTCAGATTGCTTGAGAATCATCGAAAATCTGAGCCAGTA 180 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 121 ACACTTCCAATGGGAACCATTGTCAGATTGCTTGAGAATCATCGCAAATCTGAGCCAGTT 180 Query 181 ACTCTGGGCTGTTTTAACAATCTCTATAGAAGTGTTGTGGACATGGGCAGTGATTGTTTT 240 ||| | |||||||| ||||||||||||||||| |||||||| ||| |||| ||| ||||| Sbjct 181 ACTGTTGGCTGTTTCAACAATCTCTATAGAAGCGTTGTGGAGATGAGCAGAGATAGTTTT 240 Query 241 GAGACTGAAGCTTGTAAGCAGATGCTTGTGTATCCGAAGAGTGTGAAAGACCTCCAGTGC 300 |||||||||||||||||||||||||| ||||||||| |||||||| || |||||||| Sbjct 241 GAGACTGAAGCTTGTAAGCAGATGCTCATGTATCCGAGGAGTGTGAGGGATGTCCAGTGC 300 Query 301 AAAAGGCTTAAGCTCAACATAAACCCTACTGAGGACATCAAGTGTTTTAAGTGCTCAAGT 360 |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct 301 AAAAGGCTTAAGCTCAACATAAACCCTACTGAGGACATCAAGTGCTTTAAGTGCCCAAGT 360 Query 361 TACTGCGGCTTGTACAGTAATTTCAGCACCTCTAAATGTCGTTGCGGAAAATTT-ATGAA 419 |||||| |||| ||||||||||| | |||||||| |||| |||||||||| ||| | ||| Sbjct 361 TACTGCAGCTTATACAGTAATTTTAACACCTCTATATGTAGTTGCGGAAA-TTTGACGAA 419 Query 420 CGAGGAGATTCAGTTAGAAAACGAGGAACAAGATTT-AGGCCGGTTTCAA-GATGATGAT 477 |||||||||| | ||||||||| | ||| ||| || ||||| | |||| | ||||| | Sbjct 420 CGAGGAGATTAAATTAGAAAACAAAGAAAAAG-TTGCAGGCCAGAATCAAAG-TGATGCT 477 Query 478 AATGGAGTATTTGTCAGCGGTAGGTGTTCATTCGTCTTAACCGATGACTTGGAAGTGTCA 537 |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| | Sbjct 478 AATGGAGTATTTGTCAGCGGTAGGTGTTCATTTATCTTAACTGATGACTTGGAAGTGGCT 537 Query 538 GTCAAGTCCACTGAACTTGTCTTGAATAAGCTCAAATCCTTAGGTTGTGCTGATGTTGGT 597 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || Sbjct 538 GTCAAGTCCACTGAACTTGTCTTGAATAAGCTCAAATCATTAGGTTGTGCTGATGTTAGT 597 Query 598 AAGCTCGGTGAAAGGCTTCTTGATATTGGTGT-GAAAGAGGTACTGACTCTGCTGGGATG 656 |||||||||||||||||||||||||||||| | ||| ||||||||||||||||||| ||| Sbjct 598 AAGCTCGGTGAAAGGCTTCTTGATATTGGTTTAGAA-GAGGTACTGACTCTGCTGGAATG 656 Query 657 TATATTCTCCTCAAATGCTCCCTTAAAGGACATTTTCTTGAACAAGAAGATTACACAAGG 716 |||||||||||||||||||||||| | |||| |||||||||||||| | | | ||||| Sbjct 657 TATATTCTCCTCAAATGCTCCCTTGACGGACGCATTCTTGAACAAGAAAAGTCCGCAAGG 716 Query 717 TGCGACGAAGTTTTACAAATCGCAAAGTCCATGTTTGGAGAAAAAAGAAGATGAAGCAGA 776 || |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| Sbjct 717 TGTGACGAAGTTTTACAAATCGCTAAGTCCATGTTTGGAGAAAAAAGAAGATGAAACAGA 776 Query 777 ACCTGAAAAGGTAGTAACTTTGAAAGCATTTGTGAGGAAGCAGGACATGAAGATTTTATT 836 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 777 ACCGGAAAAGGTAGTAACTTTGAAAGCATTTGTGAGGAAGCAGGACATGAAGATTTTATT 836 Query 837 TGTTGAATGCGGAGAGGAATTTGTTGAGCTTCTTTTCTCTTTTATTGCTGTCCCGCTTG- 895 |||||||||||||||||||||||||||||||||| |||||| |||||||||| ||| Sbjct 837 CATTGAATGCGGAGAGGAATTTGTTGAGCTTCTTTTATCTTTTCTTGCTGTCCCT-TTGG 895 Query 896 AATCTGCATGGGAAATCTCTGGCAGCAGTATCTCCTTAGGTTGCATAGGAAACATGTGTA 955 |||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||| Sbjct 896 AATCTGTATGGGAAATCTCTGGCAGCAGTATCTCCTTAGGTTGCATTGGAAACTTGTGTA 955 Query 956 GAACCTTCAGGGACTTAAA---T---GAGGAGACTCAAATGTCAACTTCCACATGCGCAC 1009 ||| |||||| |||||||| | |||| |||| || ||||| |||||||||||| | Sbjct 956 GAAGCTTCAGTGACTTAAAGGCTAATGAGGGGACTGAAGTGTCACCTTCCACATGCGTGC 1015 Query 1010 TTCCGTCTTTCTATAATTTCCAGATGCAACTGCCTGGTATTATCACTCAACAACCTCCGG 1069 |||| ||||| ||||||||||||||||| |||||||||| ||||||||||||||||| | Sbjct 1016 TTCCCTCTTTTTATAATTTCCAGATGCAGTTGCCTGGTATCATCACTCAACAACCTCCAG 1075 Query 1070 TGTACTACCGTTACAGGCTCTACGATTACAGGCAAATGAACTATGGTTTGACTACAAACG 1129 | |||||||| ||||||||| |||||||||||||| ||| |||||||||||||||||||| Sbjct 1076 TATACTACCGCTACAGGCTCAACGATTACAGGCAAGTGAGCTATGGTTTGACTACAAACG 1135 Query 1130 GTAATCGAACTACTTATTACCGCAAAGACAGAATCGTTCGGGTGGATTTGAAGGATCCCA 1189 |||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||| Sbjct 1136 GTAATCGAACTACTTATTTCCGCAAGGACAGAATCGTTCGGGTGGATTTGATGGATCCCA 1195 Query 1190 AATCCCGTGGCAGCGATAAGTCTGCTCAGGGGTTCTTGAAGAAAGCGACAAAGTGTACTG 1249 |||||||||||| |||||||| |||| ||||||||||| |||| |||||||| ||||| Sbjct 1196 AATCCCGTGGCATTAATAAGTCTACTCATGGGTTCTTGAAAAAAGAGACAAAGTTTACTG 1255 Query 1250 TATTAGATGATCTGACCATTACATCTATGAACTCCTGCTCCACAGTTTGTTTACTAAAGA 1309 | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1256 TGTTAGATGATCTGACCATTACATCTATGAACTCCTGCTCCACAGTTTGCTTACTAAAGA 1315 Query 1310 AGTTGCAGAGTCACGCAGACGATCTAGAGGTGCAAGTAATTAGTATCAGCAATGCAGAGG 1369 | ||||||||||| ||||||||| |||||||||||||| |||| |||||||||||||||| Sbjct 1316 ACTTGCAGAGTCATGCAGACGATTTAGAGGTGCAAGTAGTTAGCATCAGCAATGCAGAGG 1375 Query 1370 CTTTGGATTTGTTGAGAGCTTCCTTGGTGACATCCTCTGCTTTGAGCACGACATTATGGA 1429 ||||| |||||||||||||||| |||||||||||| |||||||||||||| ||||||||| Sbjct 1376 CTTTGAATTTGTTGAGAGCTTCATTGGTGACATCCGCTGCTTTGAGCACGGCATTATGGA 1435 Query 1430 ATTTGATTGCTAAGAAACTGAAGGAGGAGACTGATTTATGG-GACACGGTTTCAAAGAAA 1488 ||||||||||||||||||||||||||||||||||||||| | | | |||||||||||||| Sbjct 1436 ATTTGATTGCTAAGAAACTGAAGGAGGAGACTGATTTATTGAGCC-CGGTTTCAAAGAAA 1494 Query 1489 GTGAAGGAAGAGACTTGAAGAAATAGA-A-AGCTAGTGAGAAT 1529 || |||||||||||||||||||| | | | ||||||||||||| Sbjct 1495 GTCAAGGAAGAGACTTGAAGAAAAATACAGAGCTAGTGAGAAT 1537 > Ahg939564 jgi|Araly1|939564|scaffold_600108.1 Length=1547 Score = 433 bits (234), Expect = 2e-120 Identities = 736/973 (76%), Gaps = 56/973 (6%) Strand=Plus/Plus Query 33 TTTGAGACTTATTGTTGATGAAGAGAAAAACAAGGTTGTTTTGGCTGAAGCTTGTAGGGA 92 |||||||||||| |||||||| ||||||||||||| ||||| || || ||| ||| ||| Sbjct 54 TTTGAGACTTATCATTGATGAAAAGAAAAACAAGGTCGTTTTAGCCGAGGCTGGTAAGGA 113 Query 93 TTTTGTTGATGTACTCTTCAGCCTTCTGACACTT-CCAATGGGAACCATTGTCAGATTGC 151 ||||||| | || |||||||| || ||||| || ||||||||||| || ||| || ||| Sbjct 114 TTTTGTTCAAGTTCTCTTCAGTTTTTTGACA-TTACCAATGGGAACAATCGTCCGACTGC 172 Query 152 TTGAGAATCATCGAA-AATCTGAGCCAGTAACTC-TGGGCTGTTTTAACAATCTCTATAG 209 ||| ||| |||| || ||||||||||| || | | || ||| ||| ||| || |||| Sbjct 173 TTGGGAAGCATC-AAGTCTCTGAGCCAGTTAC-CGTTGGATGTATTAGCAACCTTTATAC 230 Query 210 AAGTGTTGTGGACATGGGCAGTGATTG-TTTTGAGACTGAAGCTTGTAAGCAGATGCTTG 268 |||||||||||||||| | ||| || |||||||||||||||||||||||||||| ||| Sbjct 231 AAGTGTTGTGGACATGAAAATTGA-TGATTTTGAGACTGAAGCTTGTAAGCAGATG-TTG 288 Query 269 -TGTATCCGAAGAGT---GTGAAAGAC-CTCCAGTGCA-AAAGGCTTAAGCTCAACATAA 322 | ||||| | || | || | || ||| | |||| |||| ||||||||||||||| Sbjct 289 CTTTATCCCAGGAATTACGTTAGGGAAGCTCAA-TGCAGAAAGT-TTAAGCTCAACATAA 346 Query 323 ACCCTACTGAGGACATCAAGTGTTTTAAGTGCT-CAAGTTAC-T-GCGGCT---TGTACA 376 |||||||||| || ||||||| ||| |||| | || | | || ||| ||| || Sbjct 347 ACCCTACTGAAAACTTCAAGTGCTTTGGGTGCAGCTCTTTCCCTAGCTGCTCAATGTGCA 406 Query 377 GTAATTTCAGCACCTCTAAATGTCGTTGCGGAAAATTTATGAACGAGG-AGATTCAGTTA 435 ||||||| | |||||| |||| | ||||| || || |||| | ||| ||||| | ||| Sbjct 407 GTAATTTTAACACCTCCCGATGTAGGTGCGGTAAGTTGATGACC-AGGGAGATTGATTTA 465 Query 436 G-A-AA-ACGAGGAACAAGATT-TAGGCCGGTTTCAAGATGATGATAA-TGGAGTATTTG 490 | || | ||||| ||| ||||| | ||| ||||| | |||||||||| Sbjct 466 CTAGAAGATGAGGAGGTC-ATTGTAGGCATCATGCAAAATGATC-TCCGTGGAGTATTTA 523 Query 491 TCAGCGGTAGGT-GTTCATTCGTCTTAACCGATGACTTGGAAGTGTCAGTCAAGTCCACT 549 |||| | |||| || |||| || ||||||| ||||| || || |||| | || ||| Sbjct 524 TCAGAGACAGGTCGT-CATTTATCATAACCGACGACTTAAAACTGACAGTTGACTCTACT 582 Query 550 -GAACTTGTCTTGAATAA-GCTCAAATC-CTTAGGTTGTGCTGATGTTGGTAAGCTCG-G 605 | || ||||| | || |||||| | ||| |||| | |||||||| ||||||| | | Sbjct 583 AGTTCTC-TCTTGCA-AACGCTCAAGGCTCTT-GGTTTTTCTGATGTTAGTAAGCT-GAG 638 Query 606 TGAAAGGCTTCTTGATATTGGTGTGAAAGAGGTACTGACTCTGCTGGGATGTATATTCTC 665 ||| || |||||||||| ||| | |||||||| ||||| ||||| ||||| ||||||| Sbjct 639 AGAACGGGTTCTTGATATCGGTCTCAAAGAGGTTTTGACTTTGCTGCGATGTGTATTCTC 698 Query 666 CTCAAATGCTCCCTTAA-AGGACATTTTCTTGAACAAG-AA-GATTACACAAGGTGCGAC 722 ||||| | ||||||| | || ||| ||||||||| || || | |||||||||||| | Sbjct 699 CTCAAGTTCTCCCTTGACAG-ACACTTTCTTGAAGAATCAAAGTTTACACAAGGTGAG-- 755 Query 723 GAAGTTTTACAAATCGCAAAGTCCATGTTTGGAGAAAAAAGAAGATGAAGCAGAACCTGA 782 |||| |||| ||| || |||||||| |||||||| || | |||||||||||||| || Sbjct 756 GAAGATTTATAAAAGGCTGAGTCCATGCTTGGAGAAGAACGGAGATGAAGCAGAACAAGA 815 Query 783 -AAAGGTAGTAACTTT-GAAAGCATTTGTGAGGAAGCAGGACATGAAGATTTTATTTGTT 840 |||| || ||||||| || ||| | || ||||| ||||||||||||||||| | |||| Sbjct 816 CAAAG-TAATAACTTTTGAT-GCAATAGTAAGGAAACAGGACATGAAGATTTTGTATGTT 873 Query 841 GAATGCGGAGAGGAATTTGTTGAGCTTCTTTTCTCTTTTATTGCTGTCCCGCTTGAATCT 900 || ||| | || || |||||||| |||||||| ||||| | || | || || |||||| Sbjct 874 GAGTGCCGTGAAGACTTTGTTGATCTTCTTTTAACTTTTCTCGCCATTCCACTGGAATCT 933 Query 901 GCATGGGAAATCTCTGGCAGC-AGTATCTCCTT-AGGTTGCATAGGAAACATGTGTAGAA 958 ||||||| ||||||||| | | ||| | || ||| ||| | || ||| | | |||| Sbjct 934 ATATGGGAAGTCTCTGGCAACCA-TAT-TAGTTTAGGATGCGTTGGGAACTTAAGCAGAA 991 Query 959 CCTTCAGGGACTT 971 ||||| |||||| Sbjct 992 GCTTCAAGGACTT 1004 > Ahg892358 jgi|Araly1|892358|Al_scaffold_0006_354 Length=684 Score = 403 bits (218), Expect = 2e-111 Identities = 352/413 (85%), Gaps = 23/413 (6%) Strand=Plus/Plus Query 730 TACAAATCGCAAAGTCCATGTTTGGAGAAAAAAGAAGATGAAGCAGAACCTGA-AAAG-- 786 |||||||||| |||| |||||||||||||||||||||||||||||||||| || || | Sbjct 19 TACAAATCGCTAAGTTCATGTTTGGAGAAAAAAGAAGATGAAGCAGAACCGGAGAAGGTA 78 Query 787 GTAGTAACTTTGAAAGCATTTGTGAGGAAGCAGGACATGAAGATTTTATTTGTTGAATGC 846 |||||||||||||||||| | || |||||||| ||||| || |||||||| ||||||||| Sbjct 79 GTAGTAACTTTGAAAGCAATCGTTAGGAAGCAAGACATAAATATTTTATTCGTTGAATGC 138 Query 847 GGAGAGGAATTTGTTGAGCTTCTTTTCTCTTTTATTGCTGTCCCGCTTGAATCTGCATGG 906 |||||||||||||||||||||||||| |||||| |||||||||||||| |||||| |||| Sbjct 139 GGAGAGGAATTTGTTGAGCTTCTTTTATCTTTTCTTGCTGTCCCGCTTAAATCTGTATGG 198 Query 907 GAAATCTCTGGCAGCAGTATCTCCTTAGGTTGCATAGGAAACATGTGTAGAACCTTCAGG 966 ||||||||||||||| ||||||| ||||||||||| |||||| ||||||||| |||||| Sbjct 199 GAAATCTCTGGCAGCGGTATCTCTTTAGGTTGCATTGGAAACTTGTGTAGAAGCTTCAGT 258 Query 967 GACTTAAATG--A----GGAGACTCAAATGTCAACTTCCACATGCGCACTT-CCGTCTTT 1019 |||||||| | | || |||| || |||||||||| ||||||||| || |||||||| Sbjct 259 GACTTAAACGCTAATAAGGGGACTGAACTGTCAACTTCAACATGCGCA-TTACCGTCTTT 317 Query 1020 CTATA-ATTTCCAGATGCAACTGCCTGGTATTATCACTCAACAACCTCCGGTGTACTACC 1078 |||| ||| ||||||||| |||| |||| ||||||||||||||||| || ||||||| Sbjct 318 TTATAGATT-CCAGATGCAGGTGCCCCGTATCATCACTCAACAACCTCCAGTATACTACC 376 Query 1079 GTTACAGGCTCTACGATTACAGGCAAATGAACTATGG-T--T-TGACTACAAA 1127 | |||| | | |||| ||||||| ||| |||||| | | |||||||||| Sbjct 377 GCTACA--C-C---GATTGCAGGCAAGTGAGCTATGGATGGTGTGACTACAAA 423 Score = 316 bits (171), Expect = 3e-85 Identities = 199/213 (93%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 1157 ACAGAATCGTTCGGGTGGATTTGAAGGATCCCAAATCCCGTGGCAGCGATAAGTCTGCTC 1216 ||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||| Sbjct 419 ACAAAATCGTTCGGGTGGATTTGATGGATCCCAAATCCCGTGGCAGTGATAAGTCTACTC 478 Query 1217 AGGGGTTCTTGAAGAAAGCGACAAAGTGTACTGTATTAGATGATCTGACCATTACATCTA 1276 | |||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||| Sbjct 479 ATGGGTTCTTGAAGAAAGAGACAAAGTTTACTGTCTTAGATGATCTGACCATTACATCTA 538 Query 1277 TGAACTCCTGCTCCACAGTTTGTTTACTAAAGAAGTTGCAGAGTCACGCAGACGATCTAG 1336 |||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||| Sbjct 539 TGAACTCCTGCTCCTCAGTTTGCTTACTAAAGAAGTTACAGAGTCACGCAGACGATCTAG 598 Query 1337 AGGTGCAAGTAATTAGTATCAGCAATGCAGAGG 1369 ||||||||||| |||| || ||||||||||||| Sbjct 599 AGGTGCAAGTAGTTAGCATTAGCAATGCAGAGG 631 > Ahg486966 jgi|Araly1|486966|fgenesh2_kg.6__100__AT5G01140.1 Length=1269 Score = 141 bits (76), Expect = 2e-32 Identities = 128/153 (84%), Gaps = 4/153 (3%) Strand=Plus/Plus Query 130 ATGGGAACCATTGTCAGATTGCTTGAGAATCATCGAAAATCTGAGCCAGTAACTCTGGGC 189 |||||||| || || |||||||||||||| |||||||| |||||| |||| ||| | || Sbjct 1 ATGGGAACAATCGTTAGATTGCTTGAGAAGCATCGAAAGTCTGAGTCAGTTACTATAGGA 60 Query 190 TGTTTTAACAATCTCTATAGAAGTGTTGTGGACATG-GGCAGTGATTGTTTTGAGACTGA 248 ||| ||| ||| || |||| |||||||||||||||| | | |||| |||||||||||| Sbjct 61 TGTCTTAGCAACCTTTATACAAGTGTTGTGGACATGAAG-ATTGATCATTTTGAGACTGA 119 Query 249 AGCTTGTAAGCAGATGCTTG-TGTATCCGAAGA 280 |||||||||||||||| ||| | ||||| |||| Sbjct 120 AGCTTGTAAGCAGATG-TTGCTTTATCCCAAGA 151 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62772723760 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5