BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01150.1
Length=1674
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486965 jgi|Araly1|486965|fgenesh2_kg.6__99__AT5G01150.1 2067 0.0
Ahg939564 jgi|Araly1|939564|scaffold_600108.1 433 2e-120
Ahg892358 jgi|Araly1|892358|Al_scaffold_0006_354 403 2e-111
Ahg486966 jgi|Araly1|486966|fgenesh2_kg.6__100__AT5G01140.1 141 2e-32
> Ahg486965 jgi|Araly1|486965|fgenesh2_kg.6__99__AT5G01150.1
Length=1578
Score = 2067 bits (1119), Expect = 0.0
Identities = 1405/1543 (91%), Gaps = 20/1543 (1%)
Strand=Plus/Plus
Query 1 ATGGCTAAAAGTAGTGAGGAGCCTAAGTTTTCTTTGAGACTTATTGTTGATGAAGAGAAA 60
|||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1 ATGGCTAAAAGTTCTGAGGAGCCTAAGTTTACTTTGAGACTTATTGTTGATGAGGAGAAA 60
Query 61 AACAAGGTTGTTTTGGCTGAAGCTTGTAGGGATTTTGTTGATGTACTCTTCAGCCTTCTG 120
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 AACAAGGTCGTTTTGGCTGAAGCTTGTAGGGAATTTGTTGATGTACTCTTCAGCCTTCTG 120
Query 121 ACACTTCCAATGGGAACCATTGTCAGATTGCTTGAGAATCATCGAAAATCTGAGCCAGTA 180
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 121 ACACTTCCAATGGGAACCATTGTCAGATTGCTTGAGAATCATCGCAAATCTGAGCCAGTT 180
Query 181 ACTCTGGGCTGTTTTAACAATCTCTATAGAAGTGTTGTGGACATGGGCAGTGATTGTTTT 240
||| | |||||||| ||||||||||||||||| |||||||| ||| |||| ||| |||||
Sbjct 181 ACTGTTGGCTGTTTCAACAATCTCTATAGAAGCGTTGTGGAGATGAGCAGAGATAGTTTT 240
Query 241 GAGACTGAAGCTTGTAAGCAGATGCTTGTGTATCCGAAGAGTGTGAAAGACCTCCAGTGC 300
|||||||||||||||||||||||||| ||||||||| |||||||| || ||||||||
Sbjct 241 GAGACTGAAGCTTGTAAGCAGATGCTCATGTATCCGAGGAGTGTGAGGGATGTCCAGTGC 300
Query 301 AAAAGGCTTAAGCTCAACATAAACCCTACTGAGGACATCAAGTGTTTTAAGTGCTCAAGT 360
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 301 AAAAGGCTTAAGCTCAACATAAACCCTACTGAGGACATCAAGTGCTTTAAGTGCCCAAGT 360
Query 361 TACTGCGGCTTGTACAGTAATTTCAGCACCTCTAAATGTCGTTGCGGAAAATTT-ATGAA 419
|||||| |||| ||||||||||| | |||||||| |||| |||||||||| ||| | |||
Sbjct 361 TACTGCAGCTTATACAGTAATTTTAACACCTCTATATGTAGTTGCGGAAA-TTTGACGAA 419
Query 420 CGAGGAGATTCAGTTAGAAAACGAGGAACAAGATTT-AGGCCGGTTTCAA-GATGATGAT 477
|||||||||| | ||||||||| | ||| ||| || ||||| | |||| | ||||| |
Sbjct 420 CGAGGAGATTAAATTAGAAAACAAAGAAAAAG-TTGCAGGCCAGAATCAAAG-TGATGCT 477
Query 478 AATGGAGTATTTGTCAGCGGTAGGTGTTCATTCGTCTTAACCGATGACTTGGAAGTGTCA 537
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
Sbjct 478 AATGGAGTATTTGTCAGCGGTAGGTGTTCATTTATCTTAACTGATGACTTGGAAGTGGCT 537
Query 538 GTCAAGTCCACTGAACTTGTCTTGAATAAGCTCAAATCCTTAGGTTGTGCTGATGTTGGT 597
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 538 GTCAAGTCCACTGAACTTGTCTTGAATAAGCTCAAATCATTAGGTTGTGCTGATGTTAGT 597
Query 598 AAGCTCGGTGAAAGGCTTCTTGATATTGGTGT-GAAAGAGGTACTGACTCTGCTGGGATG 656
|||||||||||||||||||||||||||||| | ||| ||||||||||||||||||| |||
Sbjct 598 AAGCTCGGTGAAAGGCTTCTTGATATTGGTTTAGAA-GAGGTACTGACTCTGCTGGAATG 656
Query 657 TATATTCTCCTCAAATGCTCCCTTAAAGGACATTTTCTTGAACAAGAAGATTACACAAGG 716
|||||||||||||||||||||||| | |||| |||||||||||||| | | | |||||
Sbjct 657 TATATTCTCCTCAAATGCTCCCTTGACGGACGCATTCTTGAACAAGAAAAGTCCGCAAGG 716
Query 717 TGCGACGAAGTTTTACAAATCGCAAAGTCCATGTTTGGAGAAAAAAGAAGATGAAGCAGA 776
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 717 TGTGACGAAGTTTTACAAATCGCTAAGTCCATGTTTGGAGAAAAAAGAAGATGAAACAGA 776
Query 777 ACCTGAAAAGGTAGTAACTTTGAAAGCATTTGTGAGGAAGCAGGACATGAAGATTTTATT 836
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 ACCGGAAAAGGTAGTAACTTTGAAAGCATTTGTGAGGAAGCAGGACATGAAGATTTTATT 836
Query 837 TGTTGAATGCGGAGAGGAATTTGTTGAGCTTCTTTTCTCTTTTATTGCTGTCCCGCTTG- 895
|||||||||||||||||||||||||||||||||| |||||| |||||||||| |||
Sbjct 837 CATTGAATGCGGAGAGGAATTTGTTGAGCTTCTTTTATCTTTTCTTGCTGTCCCT-TTGG 895
Query 896 AATCTGCATGGGAAATCTCTGGCAGCAGTATCTCCTTAGGTTGCATAGGAAACATGTGTA 955
|||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 896 AATCTGTATGGGAAATCTCTGGCAGCAGTATCTCCTTAGGTTGCATTGGAAACTTGTGTA 955
Query 956 GAACCTTCAGGGACTTAAA---T---GAGGAGACTCAAATGTCAACTTCCACATGCGCAC 1009
||| |||||| |||||||| | |||| |||| || ||||| |||||||||||| |
Sbjct 956 GAAGCTTCAGTGACTTAAAGGCTAATGAGGGGACTGAAGTGTCACCTTCCACATGCGTGC 1015
Query 1010 TTCCGTCTTTCTATAATTTCCAGATGCAACTGCCTGGTATTATCACTCAACAACCTCCGG 1069
|||| ||||| ||||||||||||||||| |||||||||| ||||||||||||||||| |
Sbjct 1016 TTCCCTCTTTTTATAATTTCCAGATGCAGTTGCCTGGTATCATCACTCAACAACCTCCAG 1075
Query 1070 TGTACTACCGTTACAGGCTCTACGATTACAGGCAAATGAACTATGGTTTGACTACAAACG 1129
| |||||||| ||||||||| |||||||||||||| ||| ||||||||||||||||||||
Sbjct 1076 TATACTACCGCTACAGGCTCAACGATTACAGGCAAGTGAGCTATGGTTTGACTACAAACG 1135
Query 1130 GTAATCGAACTACTTATTACCGCAAAGACAGAATCGTTCGGGTGGATTTGAAGGATCCCA 1189
|||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1136 GTAATCGAACTACTTATTTCCGCAAGGACAGAATCGTTCGGGTGGATTTGATGGATCCCA 1195
Query 1190 AATCCCGTGGCAGCGATAAGTCTGCTCAGGGGTTCTTGAAGAAAGCGACAAAGTGTACTG 1249
|||||||||||| |||||||| |||| ||||||||||| |||| |||||||| |||||
Sbjct 1196 AATCCCGTGGCATTAATAAGTCTACTCATGGGTTCTTGAAAAAAGAGACAAAGTTTACTG 1255
Query 1250 TATTAGATGATCTGACCATTACATCTATGAACTCCTGCTCCACAGTTTGTTTACTAAAGA 1309
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1256 TGTTAGATGATCTGACCATTACATCTATGAACTCCTGCTCCACAGTTTGCTTACTAAAGA 1315
Query 1310 AGTTGCAGAGTCACGCAGACGATCTAGAGGTGCAAGTAATTAGTATCAGCAATGCAGAGG 1369
| ||||||||||| ||||||||| |||||||||||||| |||| ||||||||||||||||
Sbjct 1316 ACTTGCAGAGTCATGCAGACGATTTAGAGGTGCAAGTAGTTAGCATCAGCAATGCAGAGG 1375
Query 1370 CTTTGGATTTGTTGAGAGCTTCCTTGGTGACATCCTCTGCTTTGAGCACGACATTATGGA 1429
||||| |||||||||||||||| |||||||||||| |||||||||||||| |||||||||
Sbjct 1376 CTTTGAATTTGTTGAGAGCTTCATTGGTGACATCCGCTGCTTTGAGCACGGCATTATGGA 1435
Query 1430 ATTTGATTGCTAAGAAACTGAAGGAGGAGACTGATTTATGG-GACACGGTTTCAAAGAAA 1488
||||||||||||||||||||||||||||||||||||||| | | | ||||||||||||||
Sbjct 1436 ATTTGATTGCTAAGAAACTGAAGGAGGAGACTGATTTATTGAGCC-CGGTTTCAAAGAAA 1494
Query 1489 GTGAAGGAAGAGACTTGAAGAAATAGA-A-AGCTAGTGAGAAT 1529
|| |||||||||||||||||||| | | | |||||||||||||
Sbjct 1495 GTCAAGGAAGAGACTTGAAGAAAAATACAGAGCTAGTGAGAAT 1537
> Ahg939564 jgi|Araly1|939564|scaffold_600108.1
Length=1547
Score = 433 bits (234), Expect = 2e-120
Identities = 736/973 (76%), Gaps = 56/973 (6%)
Strand=Plus/Plus
Query 33 TTTGAGACTTATTGTTGATGAAGAGAAAAACAAGGTTGTTTTGGCTGAAGCTTGTAGGGA 92
|||||||||||| |||||||| ||||||||||||| ||||| || || ||| ||| |||
Sbjct 54 TTTGAGACTTATCATTGATGAAAAGAAAAACAAGGTCGTTTTAGCCGAGGCTGGTAAGGA 113
Query 93 TTTTGTTGATGTACTCTTCAGCCTTCTGACACTT-CCAATGGGAACCATTGTCAGATTGC 151
||||||| | || |||||||| || ||||| || ||||||||||| || ||| || |||
Sbjct 114 TTTTGTTCAAGTTCTCTTCAGTTTTTTGACA-TTACCAATGGGAACAATCGTCCGACTGC 172
Query 152 TTGAGAATCATCGAA-AATCTGAGCCAGTAACTC-TGGGCTGTTTTAACAATCTCTATAG 209
||| ||| |||| || ||||||||||| || | | || ||| ||| ||| || ||||
Sbjct 173 TTGGGAAGCATC-AAGTCTCTGAGCCAGTTAC-CGTTGGATGTATTAGCAACCTTTATAC 230
Query 210 AAGTGTTGTGGACATGGGCAGTGATTG-TTTTGAGACTGAAGCTTGTAAGCAGATGCTTG 268
|||||||||||||||| | ||| || |||||||||||||||||||||||||||| |||
Sbjct 231 AAGTGTTGTGGACATGAAAATTGA-TGATTTTGAGACTGAAGCTTGTAAGCAGATG-TTG 288
Query 269 -TGTATCCGAAGAGT---GTGAAAGAC-CTCCAGTGCA-AAAGGCTTAAGCTCAACATAA 322
| ||||| | || | || | || ||| | |||| |||| |||||||||||||||
Sbjct 289 CTTTATCCCAGGAATTACGTTAGGGAAGCTCAA-TGCAGAAAGT-TTAAGCTCAACATAA 346
Query 323 ACCCTACTGAGGACATCAAGTGTTTTAAGTGCT-CAAGTTAC-T-GCGGCT---TGTACA 376
|||||||||| || ||||||| ||| |||| | || | | || ||| ||| ||
Sbjct 347 ACCCTACTGAAAACTTCAAGTGCTTTGGGTGCAGCTCTTTCCCTAGCTGCTCAATGTGCA 406
Query 377 GTAATTTCAGCACCTCTAAATGTCGTTGCGGAAAATTTATGAACGAGG-AGATTCAGTTA 435
||||||| | |||||| |||| | ||||| || || |||| | ||| ||||| | |||
Sbjct 407 GTAATTTTAACACCTCCCGATGTAGGTGCGGTAAGTTGATGACC-AGGGAGATTGATTTA 465
Query 436 G-A-AA-ACGAGGAACAAGATT-TAGGCCGGTTTCAAGATGATGATAA-TGGAGTATTTG 490
| || | ||||| ||| ||||| | ||| ||||| | ||||||||||
Sbjct 466 CTAGAAGATGAGGAGGTC-ATTGTAGGCATCATGCAAAATGATC-TCCGTGGAGTATTTA 523
Query 491 TCAGCGGTAGGT-GTTCATTCGTCTTAACCGATGACTTGGAAGTGTCAGTCAAGTCCACT 549
|||| | |||| || |||| || ||||||| ||||| || || |||| | || |||
Sbjct 524 TCAGAGACAGGTCGT-CATTTATCATAACCGACGACTTAAAACTGACAGTTGACTCTACT 582
Query 550 -GAACTTGTCTTGAATAA-GCTCAAATC-CTTAGGTTGTGCTGATGTTGGTAAGCTCG-G 605
| || ||||| | || |||||| | ||| |||| | |||||||| ||||||| | |
Sbjct 583 AGTTCTC-TCTTGCA-AACGCTCAAGGCTCTT-GGTTTTTCTGATGTTAGTAAGCT-GAG 638
Query 606 TGAAAGGCTTCTTGATATTGGTGTGAAAGAGGTACTGACTCTGCTGGGATGTATATTCTC 665
||| || |||||||||| ||| | |||||||| ||||| ||||| ||||| |||||||
Sbjct 639 AGAACGGGTTCTTGATATCGGTCTCAAAGAGGTTTTGACTTTGCTGCGATGTGTATTCTC 698
Query 666 CTCAAATGCTCCCTTAA-AGGACATTTTCTTGAACAAG-AA-GATTACACAAGGTGCGAC 722
||||| | ||||||| | || ||| ||||||||| || || | |||||||||||| |
Sbjct 699 CTCAAGTTCTCCCTTGACAG-ACACTTTCTTGAAGAATCAAAGTTTACACAAGGTGAG-- 755
Query 723 GAAGTTTTACAAATCGCAAAGTCCATGTTTGGAGAAAAAAGAAGATGAAGCAGAACCTGA 782
|||| |||| ||| || |||||||| |||||||| || | |||||||||||||| ||
Sbjct 756 GAAGATTTATAAAAGGCTGAGTCCATGCTTGGAGAAGAACGGAGATGAAGCAGAACAAGA 815
Query 783 -AAAGGTAGTAACTTT-GAAAGCATTTGTGAGGAAGCAGGACATGAAGATTTTATTTGTT 840
|||| || ||||||| || ||| | || ||||| ||||||||||||||||| | ||||
Sbjct 816 CAAAG-TAATAACTTTTGAT-GCAATAGTAAGGAAACAGGACATGAAGATTTTGTATGTT 873
Query 841 GAATGCGGAGAGGAATTTGTTGAGCTTCTTTTCTCTTTTATTGCTGTCCCGCTTGAATCT 900
|| ||| | || || |||||||| |||||||| ||||| | || | || || ||||||
Sbjct 874 GAGTGCCGTGAAGACTTTGTTGATCTTCTTTTAACTTTTCTCGCCATTCCACTGGAATCT 933
Query 901 GCATGGGAAATCTCTGGCAGC-AGTATCTCCTT-AGGTTGCATAGGAAACATGTGTAGAA 958
||||||| ||||||||| | | ||| | || ||| ||| | || ||| | | ||||
Sbjct 934 ATATGGGAAGTCTCTGGCAACCA-TAT-TAGTTTAGGATGCGTTGGGAACTTAAGCAGAA 991
Query 959 CCTTCAGGGACTT 971
||||| ||||||
Sbjct 992 GCTTCAAGGACTT 1004
> Ahg892358 jgi|Araly1|892358|Al_scaffold_0006_354
Length=684
Score = 403 bits (218), Expect = 2e-111
Identities = 352/413 (85%), Gaps = 23/413 (6%)
Strand=Plus/Plus
Query 730 TACAAATCGCAAAGTCCATGTTTGGAGAAAAAAGAAGATGAAGCAGAACCTGA-AAAG-- 786
|||||||||| |||| |||||||||||||||||||||||||||||||||| || || |
Sbjct 19 TACAAATCGCTAAGTTCATGTTTGGAGAAAAAAGAAGATGAAGCAGAACCGGAGAAGGTA 78
Query 787 GTAGTAACTTTGAAAGCATTTGTGAGGAAGCAGGACATGAAGATTTTATTTGTTGAATGC 846
|||||||||||||||||| | || |||||||| ||||| || |||||||| |||||||||
Sbjct 79 GTAGTAACTTTGAAAGCAATCGTTAGGAAGCAAGACATAAATATTTTATTCGTTGAATGC 138
Query 847 GGAGAGGAATTTGTTGAGCTTCTTTTCTCTTTTATTGCTGTCCCGCTTGAATCTGCATGG 906
|||||||||||||||||||||||||| |||||| |||||||||||||| |||||| ||||
Sbjct 139 GGAGAGGAATTTGTTGAGCTTCTTTTATCTTTTCTTGCTGTCCCGCTTAAATCTGTATGG 198
Query 907 GAAATCTCTGGCAGCAGTATCTCCTTAGGTTGCATAGGAAACATGTGTAGAACCTTCAGG 966
||||||||||||||| ||||||| ||||||||||| |||||| ||||||||| ||||||
Sbjct 199 GAAATCTCTGGCAGCGGTATCTCTTTAGGTTGCATTGGAAACTTGTGTAGAAGCTTCAGT 258
Query 967 GACTTAAATG--A----GGAGACTCAAATGTCAACTTCCACATGCGCACTT-CCGTCTTT 1019
|||||||| | | || |||| || |||||||||| ||||||||| || ||||||||
Sbjct 259 GACTTAAACGCTAATAAGGGGACTGAACTGTCAACTTCAACATGCGCA-TTACCGTCTTT 317
Query 1020 CTATA-ATTTCCAGATGCAACTGCCTGGTATTATCACTCAACAACCTCCGGTGTACTACC 1078
|||| ||| ||||||||| |||| |||| ||||||||||||||||| || |||||||
Sbjct 318 TTATAGATT-CCAGATGCAGGTGCCCCGTATCATCACTCAACAACCTCCAGTATACTACC 376
Query 1079 GTTACAGGCTCTACGATTACAGGCAAATGAACTATGG-T--T-TGACTACAAA 1127
| |||| | | |||| ||||||| ||| |||||| | | ||||||||||
Sbjct 377 GCTACA--C-C---GATTGCAGGCAAGTGAGCTATGGATGGTGTGACTACAAA 423
Score = 316 bits (171), Expect = 3e-85
Identities = 199/213 (93%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 1157 ACAGAATCGTTCGGGTGGATTTGAAGGATCCCAAATCCCGTGGCAGCGATAAGTCTGCTC 1216
||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||
Sbjct 419 ACAAAATCGTTCGGGTGGATTTGATGGATCCCAAATCCCGTGGCAGTGATAAGTCTACTC 478
Query 1217 AGGGGTTCTTGAAGAAAGCGACAAAGTGTACTGTATTAGATGATCTGACCATTACATCTA 1276
| |||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||
Sbjct 479 ATGGGTTCTTGAAGAAAGAGACAAAGTTTACTGTCTTAGATGATCTGACCATTACATCTA 538
Query 1277 TGAACTCCTGCTCCACAGTTTGTTTACTAAAGAAGTTGCAGAGTCACGCAGACGATCTAG 1336
|||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 539 TGAACTCCTGCTCCTCAGTTTGCTTACTAAAGAAGTTACAGAGTCACGCAGACGATCTAG 598
Query 1337 AGGTGCAAGTAATTAGTATCAGCAATGCAGAGG 1369
||||||||||| |||| || |||||||||||||
Sbjct 599 AGGTGCAAGTAGTTAGCATTAGCAATGCAGAGG 631
> Ahg486966 jgi|Araly1|486966|fgenesh2_kg.6__100__AT5G01140.1
Length=1269
Score = 141 bits (76), Expect = 2e-32
Identities = 128/153 (84%), Gaps = 4/153 (3%)
Strand=Plus/Plus
Query 130 ATGGGAACCATTGTCAGATTGCTTGAGAATCATCGAAAATCTGAGCCAGTAACTCTGGGC 189
|||||||| || || |||||||||||||| |||||||| |||||| |||| ||| | ||
Sbjct 1 ATGGGAACAATCGTTAGATTGCTTGAGAAGCATCGAAAGTCTGAGTCAGTTACTATAGGA 60
Query 190 TGTTTTAACAATCTCTATAGAAGTGTTGTGGACATG-GGCAGTGATTGTTTTGAGACTGA 248
||| ||| ||| || |||| |||||||||||||||| | | |||| ||||||||||||
Sbjct 61 TGTCTTAGCAACCTTTATACAAGTGTTGTGGACATGAAG-ATTGATCATTTTGAGACTGA 119
Query 249 AGCTTGTAAGCAGATGCTTG-TGTATCCGAAGA 280
|||||||||||||||| ||| | ||||| ||||
Sbjct 120 AGCTTGTAAGCAGATG-TTGCTTTATCCCAAGA 151
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62772723760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5