BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G01160.1

Length=1404
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg939840 jgi|Araly1|939840|scaffold_600384.1                        462    3e-129


> Ahg939840 jgi|Araly1|939840|scaffold_600384.1
Length=862

 Score =  462 bits (250),  Expect = 3e-129
 Identities = 299/321 (93%), Gaps = 9/321 (3%)
 Strand=Plus/Plus

Query  525  GAAGATTCAAACAATCAAGATGATGGAAGGGATCTTCATCTGTGCAGCTCCTCATTGTCT  584
            ||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  242  GAAAATTCAGACAATCAAGATGATGGAAGGAATCTTCATCTGTGCAGCTCCTCATTGTCT  301

Query  585  TAGGTCTTTCCTGAAGAAACTTGACTTTGAAGCCCATGTCCATGACCTCCATGGAAGCCT  644
            |||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct  302  TAGGTCATTCCTGAAGAAACTTGACTTTGAAGCCCATGTCCATGAGCTCCACGGAAGCCT  361

Query  645  ATTACAAGCCGATGCAGAGAAAGAAGATGGTAACCAGTCAGATGTTCAGAGCACAATGCA  704
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  362  ATTACAAGCCGATGCAGAGAAAGAAGATGGTAACCAGTCAGATGTTCAGAGCACAATGCA  421

Query  705  GCAGTCTTCAGCTTCAGAATCCACCTTGCGAGCTCCTTTAAGATCCCAGCTGCAACAATC  764
            ||| |||||||||||||||||||| ||||||| ||||||||||||||||| || ||||||
Sbjct  422  GCAATCTTCAGCTTCAGAATCCACGTTGCGAGGTCCTTTAAGATCCCAGCAGCTACAATC  481

Query  765  CCGTGAAC-----T-A--AA-CAGGTCGGCGTCATTTGCAAAGTCACAGTCTGGATTTAG  815
            ||||||||     | |  || ||||||||||||||||||||||||||| ||||||||| |
Sbjct  482  CCGTGAACAACCGTTACTAAACAGGTCGGCGTCATTTGCAAAGTCACAATCTGGATTTGG  541

Query  816  TCAAGTCCAGAATTACCCTCC  836
            |||||||||||||||||||||
Sbjct  542  TCAAGTCCAGAATTACCCTCC  562


 Score =  292 bits (158),  Expect = 4e-78
 Identities = 185/198 (93%), Gaps = 2/198 (1%)
 Strand=Plus/Plus

Query  252  TTCTCCGACGGAGAC-GGTTACTGTAGCCTGTCCCGACCATCTCGTCCTCGCCGATCTTC  310
            ||||||| ||||||| ||  | || ||||||||| ||||||||||||||||| |||||||
Sbjct  47   TTCTCCGGCGGAGACTGG-AAATGGAGCCTGTCCTGACCATCTCGTCCTCGCTGATCTTC  105

Query  311  CTGTTGCGAAAGGAATCGGTTCCGTGACTCCCACCACCGTAATCAAGCCCGTCGGTCGTC  370
            ||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||
Sbjct  106  CTGTTGCGAAAGGAATCGGTTCCGTGACTCCAACCACCGTAATCAAGCCTGTTGGTCGTC  165

Query  371  GTTCTCGCCGTCAGCTAGGCGAGAGAGTTCACTTCTGCGTTCGTTGCGATTTTCCGATTG  430
            ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct  166  GTTCTCGCCGTCAGCTAGGCGAGAGAGTTCATTTCTGCGTCCGTTGCGATTTTCCGATTG  225

Query  431  CAATCTATGGTCGTCTGA  448
            ||||||||||||||||||
Sbjct  226  CAATCTATGGTCGTCTGA  243


 Score =  159 bits (86),  Expect = 4e-38
 Identities = 96/101 (95%), Gaps = 0/101 (0%)
 Strand=Plus/Plus

Query  1119  ACCAATGACGAATCTGAATTTCCAAGGATCGTATCCTCCTCCATCATGGAATCCCGGAAT  1178
             |||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct  626   ACCAATGATGAATCTGAATTTCCAAGGATCGTATCCTCCTCCGTCATGGAATCCTGGAAT  685

Query  1179  GGCACCGCCTCACACGACCCAGCAGGTTAACCGGGGTAGAG  1219
             ||||| |||||| ||||||||||||||||||||||||||||
Sbjct  686   GGCACTGCCTCAAACGACCCAGCAGGTTAACCGGGGTAGAG  726


 Score = 63.9 bits (34),  Expect = 3e-09
 Identities = 36/37 (97%), Gaps = 0/37 (0%)
 Strand=Plus/Plus

Query  1234  GGGTGGCCACAAGAGAACCGTGATGGCTTTGGGCAGG  1270
             ||||||| |||||||||||||||||||||||||||||
Sbjct  726   GGGTGGCAACAAGAGAACCGTGATGGCTTTGGGCAGG  762



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 52488357610


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5