BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01170.1
Length=1975
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486963 jgi|Araly1|486963|fgenesh2_kg.6__97__AT5G01170.1 2723 0.0
Ahg478217 jgi|Araly1|478217|fgenesh2_kg.3__918__AT3G09070.1 122 7e-27
> Ahg486963 jgi|Araly1|486963|fgenesh2_kg.6__97__AT5G01170.1
Length=1994
Score = 2723 bits (1474), Expect = 0.0
Identities = 1837/2007 (92%), Gaps = 45/2007 (2%)
Strand=Plus/Plus
Query 1 ATCTCCTTTCTCTTTCAATGTCCGTTGGTAAAAGACGAAAGTTTCAGACATAACATCTCT 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1 ATCTCCTTTCTCTTTCAATGTCCGTTGGTAACAGACGAAAGTTTCAGACATAACAACTCT 60
Query 61 TCCCATCTCTCTCCCCTCTAAGCAATTAAGCAGACAAGACACTGATGATATGAGACGAAG 120
||| |||||||| || |||||||||||||||||||||| |||||||||||| | |||
Sbjct 61 TCCAATCTCTCT---CT-AAAGCAATTAAGCAGACAAGACAGTGATGATATGAGCCAAAG 116
Query 121 AGAAA-GAAGTC-T--TATCACTCATCCTTTCCTCTTATGAATCTCTCCGCCGACCAAGC 176
||||| | || | | ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 117 AGAAACG-AGCCGTGGTATCACTCATCGTTTCCTCTTATGAATCTCTCCGCCGACCAAGC 175
Query 177 TCCCGTCACCGCCGTCGACGAACTAGCTCCGCCTTCTCAACCGCATCGCTTATCTACATC 236
|||| || |||||| |||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 176 TCCCATCGCCGCCGCCGACGAACTAGCTCCGCCGTCTCAACCGCATCGCTTATCAACATC 235
Query 237 ATGTGATCTCCACCCAGAAGAGCGTTTCTCCGGTTTCTGTCCTTCTTGTCTTTGCGACCG 296
|||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||||| ||
Sbjct 236 ATGTGATCTCCACCCAGATGAGCGTTTCTCCGGTTTTTGTCCTTCCTGTCTCTGCGATCG 295
Query 297 CCTCTCCGTCTTAGATCACAACGCCGCTCCGCCACCGTCTTCTTCTTCCCGGAAACCTCC 356
||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 296 CCTCTCCGTCTTAGATCACAACGCCGCTCCGCCGCCGTCGTCTTCTTCCCGGAAACCTCT 355
Query 357 CTCTATCTCCGCTGTTTCGTTAAAAGCTCTCTTCAAGCCCTCCTCTAGTGGTACCAACAA 416
| |||||||||||| | |||||||||||||||| |||||| || ||||||||| ||||||
Sbjct 356 CACTATCTCCGCTGCTACGTTAAAAGCTCTCTTTAAGCCCCCCACTAGTGGTAACAACAA 415
Query 417 CTCCAACGGAAACGGTCGGGTCAGACCCGGTTTCTTCCCGGAGCTCCGACGTACAAAGTC 476
|||||| | |||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 416 CTCCAATGTAAACGGTCGGGTCAAACCCGGTTTCTTCCCGGAGCTCCGACGTACGAAGTC 475
Query 477 CTTTTCCGCAAAGAACAACGAAGGATTTTCCGGTGGGTTTGAGCCACAGCGTCGGTCTTG 536
||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 476 GTTTTCTGCAAAGAACAACGAAGGATTATCCGGTGGGTTTGAGCCGCAGCGTCGGTCTTG 535
Query 537 TGACGTCAGACTTCGTGACGACGAAAGAAACCTTCCCAT-CAATGAAGCTGCCTCCGTCG 595
||||||||| |||||||||||| | ||||||| |||| | ||| ||| ||||| ||||||
Sbjct 536 TGACGTCAGGCTTCGTGACGACCATAGAAACCCTCCC-TCCAAAGAAACTGCCACCGTCG 594
Query 596 ATAAAATCGAGGAGGAGGCTAGGGAGTCTAGCGTGAGTGAGATAGTTTTAGAGGTGACTG 655
|||||||||||| ||| | || ||||||||||||||||||||||||||||||||| ||
Sbjct 595 GTAAAATCGAGGACGAGCCGAGAAAGTCTAGCGTGAGTGAGATAGTTTTAGAGGTGAGTG 654
Query 656 AAGAAGCTGAAATTGAGGAGGATGAAGAAAA---CGG------TGAG-----AAA-GATC 700
|||||||||||||||||||||| |||||||| || |||| ||| |||
Sbjct 655 AAGAAGCTGAAATTGAGGAGGAAGAAGAAAATGGTGGCCACTCTGAGATCTTAAATGATA 714
Query 701 CCGGCGAGATAGTTGAGGAAAAAAGCAGCGAAATTGGTGAGGAAGAAGAGGAATTGAAGC 760
||||||| || ||||| ||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 715 CCGGCGAAATCGTTGAAGAAAAAAGCGGCGAAATTGTTGAGGAAGAAGAGGAATTGAAGC 774
Query 761 CAATGAAGGATTACATGGATCTCTACTCACAAACAAAGAAACCGTCGGTGAAAGATTTCG 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 CAATGAAGGATTACATGGATCTCTACTCACAAACAAAGAAACCGTCGGTGAAAGATTTCG 834
Query 821 CCGGGAGTTTCTTTTCGGCGGCCTCTGTTTTCAGCAAGAAGCTTCAGAAATGGAAGCAGA 880
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 835 CCGGGAGTTTCTTTTCGGCGGCCTCTGTTTTCAGCAAGAAACTTCAGAAATGGAGGCAGA 894
Query 881 AGCAGAAGGTGAAGAAGCCGAGAAACGGTGTCGGCGG------AGGACGGCCACAGTCTG 934
|||||||| | |||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 895 AGCAGAAGATCAAGAAGCCGAGAAACGGTGTCGGCGGCGGCGGAGGACGGCCACAGTCCG 954
Query 935 AAATCGGAGTAGGCCGGAGATCAAGCGACACCGACCCGAGATTCTCTCTTGACGCCGGGA 994
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 955 AAATCGGAGTAGGCCGGAGATCCAGCGACACCGACCCGAGATTCTCTCTTGACGCCGGGA 1014
Query 995 GATTCTCCGTCGATATAGGTCGGATTTCAATGGACGATTCTCGCTACTCATTAGATGAGC 1054
|||||||||||||||||||||||||||| ||||||||||||| ||||| || || ||||
Sbjct 1015 GATTCTCCGTCGATATAGGTCGGATTTCGCTGGACGATTCTCGTTACTCGTTGGACGAGC 1074
Query 1055 CAAGAGCGTCGTGGGATGGACACTTAATCGGCAGGACAACGGCGGCTAGGGTTCCTCTGC 1114
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1075 CAAGAGCGTCGTGGGATGGACACTTAATCAGCAGGACAACGGCGGCTAGGGTTCCTCCGC 1134
Query 1115 CGCCATCGATGTTATCAGTTGTGGAAAATGCTCCG-TTGAATCGATCAGACATGCAGATT 1173
||||||||||||||||||| ||| |||| || || || | |||||||||||||||||||
Sbjct 1135 CGCCATCGATGTTATCAGTCGTGAAAAACGCGCCAATTCA-TCGATCAGACATGCAGATT 1193
Query 1174 CCATCGTCTCCGTCAATTAAACCGATTAGCGGTGACTCCGACCCGATTATCATAATCCCA 1233
|||||||||||||||||||| ||| ||| | ||| ||||| ||||||||||| |||||
Sbjct 1194 CCATCGTCTCCGTCAATTAATCCGGTTAACAATGAATCCGATCCGATTATCATTATCCCC 1253
Query 1234 GGCGGATCCAATCAAACTCGAGACTACTACACTGGACCTCCGTCGTCACGGAGACGGAAG 1293
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1254 GGCGGATCTAATCAAACTCGAGACTATTACACTGGACCTCCGTCGTCACGGAGACGGAAG 1313
Query 1294 AGCCTCGACAGATCCAATTCTATTAGAAAAATTGTAACGGAGCTAGAGGATGTCAAATCG 1353
|||||||||||||||||||| ||||| ||||||| |||||||| || ||||||||||||
Sbjct 1314 AGCCTCGACAGATCCAATTCAATTAGGAAAATTGCGACGGAGCTGGACGATGTCAAATCG 1373
Query 1354 GTATCAAATTCGACAACAACAATAGACTCAAATTCCATGGAAACAGCGGAGAACAAAGGG 1413
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 1374 GTATCAAATTCGACAACAACAATAGATTCAAATTTCATGGAAACAGCGGAGAACAAAGGG 1433
Query 1414 AATCAAAACGGCGATAAGAAATCGAGACGGTGGG-GAAAATGGAGCATTTTAGGGTTTAT 1472
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1434 AATCAAAACGGCGATAAGAAATCGAGACGGTGGGCGAAA-TGGAGCATTTTAGGGTTTAT 1492
Query 1473 ATACAGAAAAGGTAAGGACGATGAAGAAGAAGA---TAGGTACAGCAGATCCAACAGCGC 1529
|||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 1493 ATACAGGAAAGGTAAGGACGATGAAGAAGAAGAAGATAGGTATAGCAGATCCAACAGCGC 1552
Query 1530 CGGAATGGTTGAGAGGTCTTTATCGGAATCATGGCCGGAGATGAGGAATGGAGAAGGAGG 1589
|||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||
Sbjct 1553 CGGAATGGTTGAGAGGTCTTTATCGGAATCGTGGCCGGAGCTGAGGAACGGAGAAGGAGG 1612
Query 1590 AGGACCGAAGATGAGGAGGAGTAACAGCAATGTGAGCTGGCGAAGCTCCGGTGGAGGATC 1649
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1613 AGGGCCGAAGATGAGGAGGAGTAACAGCAATGTGAGCTGGCGAAGCTCCGGTGGAGGATC 1672
Query 1650 GGCGAGGAATAAGAGTTCGAGGTATTCGTCCAAAGATGGAGAGAACGGAATGTTGAGGTT 1709
| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1673 GACGAGGAATAAGAGTTCGAGGTATTCTTCTAAAGATGGAGAGAACGGAATGTTGAGGTT 1732
Query 1710 TTATTTGACTCCGATGAGGAGAAGCTGGAAGAC-CAGCggtggtagtggtggaggcggag 1768
||||||||||||||||||||| ||||||| || | |||| ||||||||||| |||||
Sbjct 1733 TTATTTGACTCCGATGAGGAGTAGCTGGA-GAAGCGGCGGGGGTAGTGGTGGTGGCGG-- 1789
Query 1769 gcggtggtggtggtggtgggtggGAGAAGACGGCGGCTAAGGCGAATAGTCACGGCCACT 1828
||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1790 -CGGAGGCGGTGGTGGTGGGTGGGAGAAGACGGCGGCTAAGGCAAATAGTCACGGCCACT 1848
Query 1829 CTATAGCGAGGAGGGTTATGAGGCTGTATTGACCAAAGTGTCCCTCTTCATTTTAATTAT 1888
||||||| ||||| ||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 1849 CTATAGCAAGGAGAGTTATGAGGCTGTATTGACGAAATTGTCCCTCTTCATTTTAATTAT 1908
Query 1889 TGGGAGCAATGTGAGGTTTTGGTTTGGGGTTCTCTAATTATCTTTGTGAATAAATTGGAT 1948
||||||||||| ||||||||||||| ||||| ||||||||||||||||||||| |||| |
Sbjct 1909 TGGGAGCAATGGGAGGTTTTGGTTTTGGGTTGTCTAATTATCTTTGTGAATAA-TTGGTT 1967
Query 1949 ATCTACTTAACCGGAGTTAATCGGACC 1975
|||||||||||| ||||||||| ||||
Sbjct 1968 ATCTACTTAACCAGAGTTAATCAGACC 1994
> Ahg478217 jgi|Araly1|478217|fgenesh2_kg.3__918__AT3G09070.1
Length=3230
Score = 122 bits (66), Expect = 7e-27
Identities = 136/167 (81%), Gaps = 15/167 (9%)
Strand=Plus/Plus
Query 745 GAAGAGGAATTGAAGCCAATGAAGGATTACATGGATC-T-CTACTCACAAACAAAGAAAC 802
|||||||| ||||||||||| ||||||||||| |||| | |||| ||||| ||||| |
Sbjct 1712 GAAGAGGAGTTGAAGCCAATTAAGGATTACATAGATCTTGATACT--CAAACCAAGAAGC 1769
Query 803 CGTCGGTGAAAGATTTCGCCGGGAGTTTCTT-TTCGGCGGCCTCTGTTTTCAGCAAGAAG 861
| ||||| | || | ||||||| || |||||||||||||||||||||||||||
Sbjct 1770 CATCGGT----G----CGAC-GGAGTTT-TTGGTCGGCGGCCTCTGTTTTCAGCAAGAAG 1819
Query 862 CTTCAGAAATGGAAGCAGAAGCAGAAGGTGAAGAAGCCGAGAAACGG 908
||||||||||||| |||||| || ||| ||||||||| | | |||||
Sbjct 1820 CTTCAGAAATGGAGGCAGAATCAAAAGATGAAGAAGCGGCGGAACGG 1866
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74237887505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5