BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G01170.1 Length=1975 Score E Sequences producing significant alignments: (Bits) Value Ahg486963 jgi|Araly1|486963|fgenesh2_kg.6__97__AT5G01170.1 2723 0.0 Ahg478217 jgi|Araly1|478217|fgenesh2_kg.3__918__AT3G09070.1 122 7e-27 > Ahg486963 jgi|Araly1|486963|fgenesh2_kg.6__97__AT5G01170.1 Length=1994 Score = 2723 bits (1474), Expect = 0.0 Identities = 1837/2007 (92%), Gaps = 45/2007 (2%) Strand=Plus/Plus Query 1 ATCTCCTTTCTCTTTCAATGTCCGTTGGTAAAAGACGAAAGTTTCAGACATAACATCTCT 60 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 1 ATCTCCTTTCTCTTTCAATGTCCGTTGGTAACAGACGAAAGTTTCAGACATAACAACTCT 60 Query 61 TCCCATCTCTCTCCCCTCTAAGCAATTAAGCAGACAAGACACTGATGATATGAGACGAAG 120 ||| |||||||| || |||||||||||||||||||||| |||||||||||| | ||| Sbjct 61 TCCAATCTCTCT---CT-AAAGCAATTAAGCAGACAAGACAGTGATGATATGAGCCAAAG 116 Query 121 AGAAA-GAAGTC-T--TATCACTCATCCTTTCCTCTTATGAATCTCTCCGCCGACCAAGC 176 ||||| | || | | ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 117 AGAAACG-AGCCGTGGTATCACTCATCGTTTCCTCTTATGAATCTCTCCGCCGACCAAGC 175 Query 177 TCCCGTCACCGCCGTCGACGAACTAGCTCCGCCTTCTCAACCGCATCGCTTATCTACATC 236 |||| || |||||| |||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 176 TCCCATCGCCGCCGCCGACGAACTAGCTCCGCCGTCTCAACCGCATCGCTTATCAACATC 235 Query 237 ATGTGATCTCCACCCAGAAGAGCGTTTCTCCGGTTTCTGTCCTTCTTGTCTTTGCGACCG 296 |||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||||| || Sbjct 236 ATGTGATCTCCACCCAGATGAGCGTTTCTCCGGTTTTTGTCCTTCCTGTCTCTGCGATCG 295 Query 297 CCTCTCCGTCTTAGATCACAACGCCGCTCCGCCACCGTCTTCTTCTTCCCGGAAACCTCC 356 ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 296 CCTCTCCGTCTTAGATCACAACGCCGCTCCGCCGCCGTCGTCTTCTTCCCGGAAACCTCT 355 Query 357 CTCTATCTCCGCTGTTTCGTTAAAAGCTCTCTTCAAGCCCTCCTCTAGTGGTACCAACAA 416 | |||||||||||| | |||||||||||||||| |||||| || ||||||||| |||||| Sbjct 356 CACTATCTCCGCTGCTACGTTAAAAGCTCTCTTTAAGCCCCCCACTAGTGGTAACAACAA 415 Query 417 CTCCAACGGAAACGGTCGGGTCAGACCCGGTTTCTTCCCGGAGCTCCGACGTACAAAGTC 476 |||||| | |||||||||||||| |||||||||||||||||||||||||||||| ||||| Sbjct 416 CTCCAATGTAAACGGTCGGGTCAAACCCGGTTTCTTCCCGGAGCTCCGACGTACGAAGTC 475 Query 477 CTTTTCCGCAAAGAACAACGAAGGATTTTCCGGTGGGTTTGAGCCACAGCGTCGGTCTTG 536 ||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 476 GTTTTCTGCAAAGAACAACGAAGGATTATCCGGTGGGTTTGAGCCGCAGCGTCGGTCTTG 535 Query 537 TGACGTCAGACTTCGTGACGACGAAAGAAACCTTCCCAT-CAATGAAGCTGCCTCCGTCG 595 ||||||||| |||||||||||| | ||||||| |||| | ||| ||| ||||| |||||| Sbjct 536 TGACGTCAGGCTTCGTGACGACCATAGAAACCCTCCC-TCCAAAGAAACTGCCACCGTCG 594 Query 596 ATAAAATCGAGGAGGAGGCTAGGGAGTCTAGCGTGAGTGAGATAGTTTTAGAGGTGACTG 655 |||||||||||| ||| | || ||||||||||||||||||||||||||||||||| || Sbjct 595 GTAAAATCGAGGACGAGCCGAGAAAGTCTAGCGTGAGTGAGATAGTTTTAGAGGTGAGTG 654 Query 656 AAGAAGCTGAAATTGAGGAGGATGAAGAAAA---CGG------TGAG-----AAA-GATC 700 |||||||||||||||||||||| |||||||| || |||| ||| ||| Sbjct 655 AAGAAGCTGAAATTGAGGAGGAAGAAGAAAATGGTGGCCACTCTGAGATCTTAAATGATA 714 Query 701 CCGGCGAGATAGTTGAGGAAAAAAGCAGCGAAATTGGTGAGGAAGAAGAGGAATTGAAGC 760 ||||||| || ||||| ||||||||| ||||||||| ||||||||||||||||||||||| Sbjct 715 CCGGCGAAATCGTTGAAGAAAAAAGCGGCGAAATTGTTGAGGAAGAAGAGGAATTGAAGC 774 Query 761 CAATGAAGGATTACATGGATCTCTACTCACAAACAAAGAAACCGTCGGTGAAAGATTTCG 820 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 775 CAATGAAGGATTACATGGATCTCTACTCACAAACAAAGAAACCGTCGGTGAAAGATTTCG 834 Query 821 CCGGGAGTTTCTTTTCGGCGGCCTCTGTTTTCAGCAAGAAGCTTCAGAAATGGAAGCAGA 880 |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct 835 CCGGGAGTTTCTTTTCGGCGGCCTCTGTTTTCAGCAAGAAACTTCAGAAATGGAGGCAGA 894 Query 881 AGCAGAAGGTGAAGAAGCCGAGAAACGGTGTCGGCGG------AGGACGGCCACAGTCTG 934 |||||||| | |||||||||||||||||||||||||| ||||||||||||||| | Sbjct 895 AGCAGAAGATCAAGAAGCCGAGAAACGGTGTCGGCGGCGGCGGAGGACGGCCACAGTCCG 954 Query 935 AAATCGGAGTAGGCCGGAGATCAAGCGACACCGACCCGAGATTCTCTCTTGACGCCGGGA 994 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 955 AAATCGGAGTAGGCCGGAGATCCAGCGACACCGACCCGAGATTCTCTCTTGACGCCGGGA 1014 Query 995 GATTCTCCGTCGATATAGGTCGGATTTCAATGGACGATTCTCGCTACTCATTAGATGAGC 1054 |||||||||||||||||||||||||||| ||||||||||||| ||||| || || |||| Sbjct 1015 GATTCTCCGTCGATATAGGTCGGATTTCGCTGGACGATTCTCGTTACTCGTTGGACGAGC 1074 Query 1055 CAAGAGCGTCGTGGGATGGACACTTAATCGGCAGGACAACGGCGGCTAGGGTTCCTCTGC 1114 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || Sbjct 1075 CAAGAGCGTCGTGGGATGGACACTTAATCAGCAGGACAACGGCGGCTAGGGTTCCTCCGC 1134 Query 1115 CGCCATCGATGTTATCAGTTGTGGAAAATGCTCCG-TTGAATCGATCAGACATGCAGATT 1173 ||||||||||||||||||| ||| |||| || || || | ||||||||||||||||||| Sbjct 1135 CGCCATCGATGTTATCAGTCGTGAAAAACGCGCCAATTCA-TCGATCAGACATGCAGATT 1193 Query 1174 CCATCGTCTCCGTCAATTAAACCGATTAGCGGTGACTCCGACCCGATTATCATAATCCCA 1233 |||||||||||||||||||| ||| ||| | ||| ||||| ||||||||||| ||||| Sbjct 1194 CCATCGTCTCCGTCAATTAATCCGGTTAACAATGAATCCGATCCGATTATCATTATCCCC 1253 Query 1234 GGCGGATCCAATCAAACTCGAGACTACTACACTGGACCTCCGTCGTCACGGAGACGGAAG 1293 |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1254 GGCGGATCTAATCAAACTCGAGACTATTACACTGGACCTCCGTCGTCACGGAGACGGAAG 1313 Query 1294 AGCCTCGACAGATCCAATTCTATTAGAAAAATTGTAACGGAGCTAGAGGATGTCAAATCG 1353 |||||||||||||||||||| ||||| ||||||| |||||||| || |||||||||||| Sbjct 1314 AGCCTCGACAGATCCAATTCAATTAGGAAAATTGCGACGGAGCTGGACGATGTCAAATCG 1373 Query 1354 GTATCAAATTCGACAACAACAATAGACTCAAATTCCATGGAAACAGCGGAGAACAAAGGG 1413 |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| Sbjct 1374 GTATCAAATTCGACAACAACAATAGATTCAAATTTCATGGAAACAGCGGAGAACAAAGGG 1433 Query 1414 AATCAAAACGGCGATAAGAAATCGAGACGGTGGG-GAAAATGGAGCATTTTAGGGTTTAT 1472 |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct 1434 AATCAAAACGGCGATAAGAAATCGAGACGGTGGGCGAAA-TGGAGCATTTTAGGGTTTAT 1492 Query 1473 ATACAGAAAAGGTAAGGACGATGAAGAAGAAGA---TAGGTACAGCAGATCCAACAGCGC 1529 |||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||| Sbjct 1493 ATACAGGAAAGGTAAGGACGATGAAGAAGAAGAAGATAGGTATAGCAGATCCAACAGCGC 1552 Query 1530 CGGAATGGTTGAGAGGTCTTTATCGGAATCATGGCCGGAGATGAGGAATGGAGAAGGAGG 1589 |||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| Sbjct 1553 CGGAATGGTTGAGAGGTCTTTATCGGAATCGTGGCCGGAGCTGAGGAACGGAGAAGGAGG 1612 Query 1590 AGGACCGAAGATGAGGAGGAGTAACAGCAATGTGAGCTGGCGAAGCTCCGGTGGAGGATC 1649 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1613 AGGGCCGAAGATGAGGAGGAGTAACAGCAATGTGAGCTGGCGAAGCTCCGGTGGAGGATC 1672 Query 1650 GGCGAGGAATAAGAGTTCGAGGTATTCGTCCAAAGATGGAGAGAACGGAATGTTGAGGTT 1709 | ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 1673 GACGAGGAATAAGAGTTCGAGGTATTCTTCTAAAGATGGAGAGAACGGAATGTTGAGGTT 1732 Query 1710 TTATTTGACTCCGATGAGGAGAAGCTGGAAGAC-CAGCggtggtagtggtggaggcggag 1768 ||||||||||||||||||||| ||||||| || | |||| ||||||||||| ||||| Sbjct 1733 TTATTTGACTCCGATGAGGAGTAGCTGGA-GAAGCGGCGGGGGTAGTGGTGGTGGCGG-- 1789 Query 1769 gcggtggtggtggtggtgggtggGAGAAGACGGCGGCTAAGGCGAATAGTCACGGCCACT 1828 ||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1790 -CGGAGGCGGTGGTGGTGGGTGGGAGAAGACGGCGGCTAAGGCAAATAGTCACGGCCACT 1848 Query 1829 CTATAGCGAGGAGGGTTATGAGGCTGTATTGACCAAAGTGTCCCTCTTCATTTTAATTAT 1888 ||||||| ||||| ||||||||||||||||||| ||| |||||||||||||||||||||| Sbjct 1849 CTATAGCAAGGAGAGTTATGAGGCTGTATTGACGAAATTGTCCCTCTTCATTTTAATTAT 1908 Query 1889 TGGGAGCAATGTGAGGTTTTGGTTTGGGGTTCTCTAATTATCTTTGTGAATAAATTGGAT 1948 ||||||||||| ||||||||||||| ||||| ||||||||||||||||||||| |||| | Sbjct 1909 TGGGAGCAATGGGAGGTTTTGGTTTTGGGTTGTCTAATTATCTTTGTGAATAA-TTGGTT 1967 Query 1949 ATCTACTTAACCGGAGTTAATCGGACC 1975 |||||||||||| ||||||||| |||| Sbjct 1968 ATCTACTTAACCAGAGTTAATCAGACC 1994 > Ahg478217 jgi|Araly1|478217|fgenesh2_kg.3__918__AT3G09070.1 Length=3230 Score = 122 bits (66), Expect = 7e-27 Identities = 136/167 (81%), Gaps = 15/167 (9%) Strand=Plus/Plus Query 745 GAAGAGGAATTGAAGCCAATGAAGGATTACATGGATC-T-CTACTCACAAACAAAGAAAC 802 |||||||| ||||||||||| ||||||||||| |||| | |||| ||||| ||||| | Sbjct 1712 GAAGAGGAGTTGAAGCCAATTAAGGATTACATAGATCTTGATACT--CAAACCAAGAAGC 1769 Query 803 CGTCGGTGAAAGATTTCGCCGGGAGTTTCTT-TTCGGCGGCCTCTGTTTTCAGCAAGAAG 861 | ||||| | || | ||||||| || ||||||||||||||||||||||||||| Sbjct 1770 CATCGGT----G----CGAC-GGAGTTT-TTGGTCGGCGGCCTCTGTTTTCAGCAAGAAG 1819 Query 862 CTTCAGAAATGGAAGCAGAAGCAGAAGGTGAAGAAGCCGAGAAACGG 908 ||||||||||||| |||||| || ||| ||||||||| | | ||||| Sbjct 1820 CTTCAGAAATGGAGGCAGAATCAAAAGATGAAGAAGCGGCGGAACGG 1866 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 74237887505 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5