BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01180.1
Length=2055
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324861 jgi|Araly1|324861|fgenesh1_pm.C_scaffold_6000081 2732 0.0
> Ahg324861 jgi|Araly1|324861|fgenesh1_pm.C_scaffold_6000081
Length=1713
Score = 2732 bits (1479), Expect = 0.0
Identities = 1639/1717 (95%), Gaps = 8/1717 (0%)
Strand=Plus/Plus
Query 103 ATGGAAGATGACAAGGATATATACACAAAAGATGGAACTCTTGACATTCACAAGAAACCA 162
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAAGAGGACAAGGATATATACACACAAGATGGAACTCTTGACATTCACAAGAAACCA 60
Query 163 GCCAACAAGAATAAAACTGGAACCTGGAAAGCTTGCAGATTCATTCTTGGAACTGAGTGC 222
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCAAACAAGAATAAAACAGGAACCTGGAAAGCTTGCAGATTCATTCTTGGAACTGAGTGC 120
Query 223 TGTGAAAGATTAGCTTACTATGGAATGAGTACTAATCTCATCAACTATCTCGAGAAACAA 282
||||||||||| ||||||||||||||||||||||||||| | |||||||| |||||||||
Sbjct 121 TGTGAAAGATTGGCTTACTATGGAATGAGTACTAATCTCGTGAACTATCTTGAGAAACAA 180
Query 283 ATGAATATGGAAAACGTCTCTGCTTCTAAGAGTGTCAGTAACTGGTCTGGAACATGTTAC 342
||||||||||||| |||| ||||||| || ||||||| |||||||||||||||||||||
Sbjct 181 ATGAATATGGAAACCGTCACTGCTTCCAACAGTGTCACTAACTGGTCTGGAACATGTTAT 240
Query 343 GCTACTCCTTTGATCGGTGCTTTTATCGCCGATGCTTATCTCGGTCGATACTGGACCATC 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCTACTCCTTTGATCGGTGCTTTTATCGCCGATGCTTATCTCGGTCGATACTGGACCATC 300
Query 403 GCTTCCTTTGTCGTCATCTACATTGCCGGAATGACGCTATTGACGATATCAGCTTCGGTT 462
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 301 GCTTCCTTTGTCGTCATCTACATTTCTGGAATGACGCTATTGACGATATCAGCTTCGGTT 360
Query 463 CCTGGTCTAACACCAACCTGCAGCGGAGAA-ACCTGTCACGCAACAGCGGGTCAAACCGC 521
||||||||||||||||||||||||||| || | |||||||||||| ||| |||||||||
Sbjct 361 CCTGGTCTAACACCAACCTGCAGCGGA-AACAGCTGTCACGCAACCGCGTCTCAAACCGC 419
Query 522 TATTACATTCATAGCGCTTTACTTGATCGCACTCGGAACTGGAGGGATCAAGCCTTGTGT 581
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 420 GGTTACATTCATCGCGCTTTACTTGATCGCACTCGGTACTGGAGGGATCAAGCCTTGTGT 479
Query 582 CTCTTCCTTTGGTGCTGATCAGTTTGATGATACAGACGAAAAAGAGAAAGAGTCTAAGAG 641
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 480 CTCTTCCTTTGGTGCTGATCAGTTTGATGATACAGATGAAAAAGAGAAAGAGTCGAAAAG 539
Query 642 CTCTTTCTTTAACTGGTTCTACTTTGTGATCAACGTTGGTGCAATGATTGCTTCCTCTGT 701
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CTCTTTCTTTAATTGGTTTTACTTTGTGATCAACGTTGGTGCAATGATTGCTTCCTCTGT 599
Query 702 TCTCGTTTGGATTCAGATGAATGTTGGTTGGGGTTGGGGTTTAGGTGTTCCCACCGTCGC 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TCTCGTTTGGATTCAGATGAATGTTGGTTGGGGTTGGGGTTTAGGTGTTCCCACCGTCGC 659
Query 762 AATGGCTATAGCCGTCGTGTTCTTCTTCGCCGGAAGCAACTTCTACAGGCTGCAGAAACC 821
||||| | |||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 660 AATGGGTGTAGCCGTCGTTTTCTTCTTCGCCGGAAGCAAGTTCTACAGGCTGCAGAAACC 719
Query 822 AGGAGGAAGTCCTCTCACAAGAATGCTGCAAGTCATTGTGGCTTCATGCAGAAAATCTAA 881
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 720 AGGAGGAAGTCCGCTCACAAGAATGCTTCAAGTCATTGTGGCTTCATGCAGAAAATCTAA 779
Query 882 AGTGAAAATTCCTGAAGATGAATCTCTTCTCTACGAGAACCAAGACGCCGAAAGCAGTAT 941
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 AGTGAAAGTCCCTGAAGATGAATCTCTTCTCTACGAGAACCAAGACGCCGAAAGCAGTAT 839
Query 942 CATAGGAAGCCGCAAGCTCGAACACACCAAAATATTAACGTTCTTTGATAAGGCAGCAGT 1001
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 840 CATAGGAAGCCGCAAGCTCGAACACACCAAAATATTAACGTTCTTTGATAAAGCAGCAGT 899
Query 1002 GGAAACAGAGAGTGACAACAAAGGAGCAGCTAAGTCGTC-TTCATGGAAGCTATGCACAG 1060
| | ||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 900 GCAGACAGAGAGTGACAACAAAGGAGCAGCTAAGTCGTCGTT-ATGGAAGCTATGCACAG 958
Query 1061 TGACACAAGTAGAAGAGCTCAAAGCACTGATCCGTCTCTTACCGATTTGGGCCACAGGGA 1120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 959 TGACACAAGTAGAAGAGCTCAAAGCACTGATCCGCCTCTTACCGATTTGGGCCACAGGGA 1018
Query 1121 TTGT-TTTCGCTTCGGTTTATAGCCAAATGGGGACTGTGTTTGTACTACAAGGCAACACA 1179
|||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TTGTCTTT-GCTTCTGTTTATAGCCAAATGGGGACTGTGTTTGTACTACAAGGCAACACA 1077
Query 1180 CTGGACCAACACATGGGACCTAACTTCAAAATCCCTTCCGCATCACTCTCCTTATTCGAT 1239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 TTGGACCAACACATGGGACCTAACTTCAAAATCCCTTCCGCATCACTCTCCTTATTCGAC 1137
Query 1240 ACGCTTAGTGTCCTGTTTTGGGCACCTGTCTACGACAAGCTAATTGTTCCCTTCGCCCGG 1299
|||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1138 ACGCTTAGTGTCCTCTTTTGGGCACCTGTCTATGACAAGCTAATTGTTCCCTTTGCCCGG 1197
Query 1300 AAATACACAGGTCACGAACGCGGATTCACACAGCTTCAACGGATTGGAATCGGGCTTGTA 1359
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1198 AAATACACAGGTCACGAACGCGGGTTCACACAGCTTCAACGGATTGGAATCGGGCTCGTA 1257
Query 1360 ATCTCCATCTTTTCTATGGTCTCTGCGGGAATCCTCGAGGTCGCAAGGTTAAACTACGTT 1419
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 ATCTCTATCTTTGCTATGGTCTCTGCGGGAATCCTCGAGGTCGCAAGGTTAAACTACGTT 1317
Query 1420 CAAACACACAATCTTTACAATGAAGAGACTATCCCGATGACGATTTTCTGGCAAGTTCCG 1479
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1318 CAAACACACAATCTTTACAATGAAGAGACAATCCCGATGACGATTTTCTGGCAAGTTCCG 1377
Query 1480 CAGTATTTTTTGGTGGGTTGCGCCGAGGTTTTCACGTTTATAGGTCAGCTTGAGTTCTTC 1539
||||||||| | ||||||||||| ||||||||||| ||| ||||||||||||||||||||
Sbjct 1378 CAGTATTTTCTCGTGGGTTGCGCGGAGGTTTTCACTTTTGTAGGTCAGCTTGAGTTCTTC 1437
Query 1540 TATGACCAAGCTCCTGATGCTATGAGGAGTCTCTGCTCGGCTTTGTCGCTCACCGCAATT 1599
||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1438 TATGATCAAGCTCCTGATGCTATGAGGAGTCTCTGCTCGGCTTTGTCGCTCACCACGGTT 1497
Query 1600 GCATTTGGGAACTATCTGAGCACATTTCTGGTGACATTGGTCACTAA-AGTCACGAGATC 1658
||||||||||||||||||||||||||| ||||||||||| ||||||| | ||||||||||
Sbjct 1498 GCATTTGGGAACTATCTGAGCACATTTTTGGTGACATTGATCACTAATA-TCACGAGATC 1556
Query 1659 AGGTGGAAGACCAGGCTGGATCGCTAAGAACCTCAACAATGGTCATCTTGATTACTTCTT 1718
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1557 GGGTGGAAGACCAGGCTGGATCGCTAAAAACCTCAACAATGGTCATCTTGATTACTTCTT 1616
Query 1719 TTGGCTATTAGCTGGTCTGAGTTTCTTGAATTTCTTGGTCTACCTTTGGATTGCTAAATG 1778
||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1617 TTGGCTATTAGCTGGTCTGAGTTTCTTGAATTTCTTGATCTTTCTTTGGATTGCTAAATG 1676
Query 1779 GTACACTTACAAGAAAACGACCGGGCATGCGCTTTGA 1815
||||||||||||||||||||| |||||||| ||||||
Sbjct 1677 GTACACTTACAAGAAAACGACGGGGCATGCACTTTGA 1713
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77285107105
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5