BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01190.1
Length=1821
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892095 jgi|Araly1|892095|Al_scaffold_0006_91 2667 0.0
> Ahg892095 jgi|Araly1|892095|Al_scaffold_0006_91
Length=1680
Score = 2667 bits (1444), Expect = 0.0
Identities = 1604/1682 (95%), Gaps = 7/1682 (0%)
Strand=Plus/Plus
Query 1 ATGGTATTTCCAAT--T-CGGATTTTGGTTCTTTTCGCATTGCTCGCCTTCCCGGCATGC 57
|||| ||||||||| | ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGAATTTCCAATAATCCGGATTTTGGTTCTTTTCGCATTACTCGCCTTCCCGGCATGC 60
Query 58 GTCCACGGTGCAATCCGCAAGTACACCTTCAACGTGGTAACGAAACAAGTGACGCGGATT 117
|||||||||||||| ||||||||||| ||||||||||||||||||||||| || || ||
Sbjct 61 GTCCACGGTGCAATTCGCAAGTACACATTCAACGTGGTAACGAAACAAGTAACAAGGCTT 120
Query 118 TGTTCAACGAAACAGATCGTTACCGTTAACGGTAAATTCCCAGGACCCACAATCTACGCT 177
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 TGTTCAACGAAACAGATCGTTACCGTTAACGGTAAATTTCCAGGACCCACAATCTACGCT 180
Query 178 AATGAAGACGACACAATTCTCGTTAACGTCGTTAACAACGTCAAGTATAACGTCTCTATC 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AATGAAGACGACACAATTCTCGTTAACGTCGTTAACAACGTCAAGTATAACGTCTCTATC 240
Query 238 CATTGGCATGGGATAAGACAATTAAGAACCGGTTGGGCTGACGGACCGGCCTACATAACT 297
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 241 CATTGGCATGGGATAAGACAATTAAGAACCGGTTGGGCTGACGGACCGGCCTATATAACC 300
Query 298 CAATGTCCAATTAAGCCGGGTCACAGCTACGTGTATAATTTCACGGTCACGGGTCAACGT 357
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 301 CAATGTCCAATTAAACCGGGTCACAGCTACGTGTATAATTTCACGGTCACGGGGCAACGT 360
Query 358 GGTACGCTCTGGTGGCACGCACATGTTCTCTGGCTCCGAGCTACGGTTCATGGTGCCATC 417
||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||
Sbjct 361 GGTACGCTCTGGTGGCATGCGCATGTTCTCTGGCTCCGAGCTACAGTTCATGGTGCCATC 420
Query 418 GTGATTCTGCCTAAACTGGGTCTACCTTACCCGTTCCCTAAACCACATAGAGAAGAAGTC 477
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 421 GTGATTCTGCCTAAACCGGGTCTACCTTACCCGTTCCCTAAACCACACAGAGAAGAAGTC 480
Query 478 ATCATACTCGGTGAGTGGTGGAAATCAGATACCGAAACGGTAGTAAATGAAGCATTAAAA 537
|||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 481 ATCATACTAGGTGAGTGGTGGAAATCAGATACCGAAACGGTTGTTAATGAAGCATTAAAA 540
Query 538 TCCGGTTTAGCACCAAATGTCTCAGATGCTCACGTCATTAACGGTCATCCCGGTTTCGTT 597
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 541 TCCGGTTTAGCACCCAATGTCTCAGATGCTCACGTCATTAACGGTCATCCCGGTCTCGTT 600
Query 598 CCAAATTGTCCGTCGCAAGGTAATTTTAAATTAGCGGTAGAGAGCGGGAAAACATACATG 657
||||| ||||||||| ||||||||||||||||||| || || ||||||||||||||||||
Sbjct 601 CCAAACTGTCCGTCGGAAGGTAATTTTAAATTAGCAGTGGAAAGCGGGAAAACATACATG 660
Query 658 CTACGACTAATAAACGCAGC-ATTGAACGAAGAACTCTTCTTCAAGATCGCCGGCCACCG 716
|||||| ||||||||||||| || ||||||||||||||||||||| ||||||||||||||
Sbjct 661 CTACGATTAATAAACGCAGCTAT-GAACGAAGAACTCTTCTTCAAAATCGCCGGCCACCG 719
Query 717 TTTCACCGTTGTGGAAGTCGACGCCGTATATGTCAAACCCTTCAACACCGACACAATCCT 776
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 720 TTTCACCGTTGTGGAAGTCGACGCCGTCTACGTCAAACCCTTCAACACCGACACAATCCT 779
Query 777 AATCGCCCCCGGTCAAACCACCACCGCCTTAGTCTCCGCCGCACGTCCTTCCGGTCAATA 836
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 780 AATCGCCCCCGGTCAAACCACCACCGCCTTAGTCTCCGCCGCACGTCCCTCCGGTCAATA 839
Query 837 TCTAATCGCCGCTGCTCCTTTCCAAGACTCCGCCGTCGTCGCCGTCGATAATCGCACCGC 896
||||| ||||| |||||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct 840 CCTAATTGCCGCCGCTCCTTTTCAAGACTCGGCCGTCGTTGCCGTCGATAATCGCACCGC 899
Query 897 CACCGCTACCGTTCATTACTCCGGCACGCTCTCCGCCACACCCACCAAAACCACTTCACC 956
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 900 CACCGCTACCGTTCATTACTCCGGAACGCTCTCCGCCACACCCACCAAAACCACTTCACC 959
Query 957 ACCGCCTCAAAACGCCACCTCTGTCGCAAATACATTCGTTAATTCCCTCAGAAGTCTCAA 1016
|||||||||||||||||||||||| |||||||||||| ||||||||||| | ||||||||
Sbjct 960 ACCGCCTCAAAACGCCACCTCTGTAGCAAATACATTCATTAATTCCCTCCGGAGTCTCAA 1019
Query 1017 TTCCAAGACATATCCGGCTAACGTTCCGATCACCGTTGACCACGATCT-TCTATTCACCG 1075
||| ||||||||||||||||| ||||||||||||||||| |||||||| | |||||||||
Sbjct 1020 TTCAAAGACATATCCGGCTAAAGTTCCGATCACCGTTGATCACGATCTAT-TATTCACCG 1078
Query 1076 TTGGATTAGGAATCAACCGATGTCACAGCTGTAAAGCCGGAAACTTCTCACGAGTCGTCG 1135
||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1079 TTGGATTAGGAGTCAACCGATGTCACAGTTGTAAAGCCGGAAACTTCTCACGTGTCGTCG 1138
Query 1136 CCGCCATAAACAACATTACATTCAAGATGCCTAAAACGGCTCTGCTTCAAGCGCATTACT 1195
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1139 CTGCCATAAACAACATTACATTCAAAATGCCTAAAACGGCTCTGCTTCAAGCGCATTACT 1198
Query 1196 TTAACCTAACCGGAATATACACAACCGATTTTCCTGCAAAACCAAGACGGGTTTTCGATT 1255
| ||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1199 TCAACTTAACCGGAATATACACAACCGATTTTCCTGGAAAACCAAGACGGTTTTTCGATT 1258
Query 1256 TTACCGGAAAACCGCCTTCCAATTTAGCAACCATGAAGGCTACAAAGCTTTACAAGCTTC 1315
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1259 TTACCGGAAAACCGCCTTCGAATTTAGCAACCATGAAGGCTACAAAGCTTTATAAGCTTC 1318
Query 1316 CATATAATTCGACGGTGCAAGTTGTTTTGCAAGACACCGGAAATGTAGCGCCGGAGAATC 1375
|||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1319 CATACAATTCGACGGTGCAAGTTGTTTTGCAAGATACCGGAAATGTGGCGCCGGAGAATC 1378
Query 1376 ATCCGATTCATCTACATGGATTTAATTTCTTTGTGGTTGGTTTAGGAACTGGAAACTATA 1435
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 ATCCGATTCATCTCCATGGATTTAATTTCTTTGTGGTTGGTTTAGGAACTGGAAACTATA 1438
Query 1436 ATTCCAAGAAAGATTCTAACAAGTTTAATCTTGTTGATCCGGTGGAGAGAAATACCGTCG 1495
|||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1439 ATTCCAAGAAAGATTCGAAAAAGTTTAATCTTGTTGATCCGGTGGAGAGGAATACCGTCG 1498
Query 1496 GTGTACCTTCCGGTGGTTGGGCGGCGATCAGATTCCGAGCAGATAATCCAGGGGTTTGGT 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 GTGTACCTTCCGGTGGTTGGGCGGCGATCAGATTCCGAGCAGATAATCCAGGGGTTTGGT 1558
Query 1556 TTATGCATTGCCATTTAGAGGTACATACAACATGGGGACTAAAAATGGCTTTCTTGGTGG 1615
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1559 TTATGCATTGCCATATAGAGGTACACACAACATGGGGACTAAAAATGGCTTTCTTGGTGG 1618
Query 1616 AGAATGGTAAAGGCCCTAACCAATCAATTCGTCCTCCTCCAAGTGATCTTCCCAAATGTT 1675
|||||||||||||||| ||||||||||||| |||||| |||||||| |||||||||||||
Sbjct 1619 AGAATGGTAAAGGCCCAAACCAATCAATTCTTCCTCCCCCAAGTGACCTTCCCAAATGTT 1678
Query 1676 GA 1677
||
Sbjct 1679 GA 1680
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68371989775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5