BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01210.1
Length=1802
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486958 jgi|Araly1|486958|fgenesh2_kg.6__92__AT5G01210.1 2246 0.0
> Ahg486958 jgi|Araly1|486958|fgenesh2_kg.6__92__AT5G01210.1
Length=1679
Score = 2246 bits (1216), Expect = 0.0
Identities = 1385/1467 (94%), Gaps = 10/1467 (1%)
Strand=Plus/Plus
Query 74 AAATAAAATGCCTTCTTGTTCGGTAACTGAAATTTCAAAATGTATCGTCTATCCGGAGAA 133
||||||||||||||||||||| ||||| | |||||||||||| || || |||||||||||
Sbjct 2 AAATAAAATGCCTTCTTGTTCAGTAACAGGAATTTCAAAATGCATAGTTTATCCGGAGAA 61
Query 134 GAAGTCCACCGTCTCCGATCTCCGTCTCTCCGTCTCCGACCTCCCTATGCTCTCATGTCA 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 GAAGTCCACCGTCTCCGATCTCCGTCTCTCCGTCTCCGACCTCCCTATGCTCTCATGTCA 121
Query 194 TTACATTCAAAAAGGCGtcctcctcac-cagccctcctccttccttctccttcgacgacc 252
||||||||||||||||||||||||| | | |||||||||||||||| |||||||||||||
Sbjct 122 TTACATTCAAAAAGGCGTCCTCCTCTCTC-GCCCTCCTCCTTCCTTTTCCTTCGACGACC 180
Query 253 ttgtctcctctctccgccgttctctctcctccactctttccctcttccCTGCTTTAGCCG 312
||||||||||||||||||||||||| ||||||||||| || || ||||||||||||||||
Sbjct 181 TTGTCTCCTCTCTCCGCCGTTCTCTTTCCTCCACTCTCTCTCTTTTCCCTGCTTTAGCCG 240
Query 313 GCCGTTTCTCCACCACTCCCGCCGGTCACATTTCCATTGTCTGCAACGACGCCGGAGTTG 372
| ||||||||||||| ||||||||||||||||||||| |||||||||||||| || ||||
Sbjct 241 GACGTTTCTCCACCAGTCCCGCCGGTCACATTTCCATAGTCTGCAACGACGCGGGCGTTG 300
Query 373 ATTTCGTCGCCGCTTCCGCTAAACACGTCAAACTCTCTGATGTTCTCTTACCAGGTGAAG 432
|||||||||||||||| ||||||||||||||| |||| || ||||||||||||| | |||
Sbjct 301 ATTTCGTCGCCGCTTCTGCTAAACACGTCAAAGTCTCCGACGTTCTCTTACCAGATAAAG 360
Query 433 ACGTTCCTCTGCTTTTCCGTGAGTTTTTCGTCTTCGAGCGTCTCGTTAGTTACAACGGTC 492
||||||| || || ||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 361 ACGTTCCGCTTCTCTTCCGTGAGTTTTTCGTCTTCGAACGTCTCGTTAGTTATAACGGTC 420
Query 493 ATCATAAGCCTCTCGCCGCCGTTCAAGTGACGGAGCTCCACGACGGTGTCTTCATCGGAT 552
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 421 ATCATAAGCCTCTCGCCGCCGTTCAAGTGACGGAGCTCGACGACGGTGTTTTCATCGGAT 480
Query 553 GTACCGTGAATCATTCCGTTACTGACGGAACTTCCTTCTGGCACTTCTTCAACACCTTTG 612
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
Sbjct 481 GTACCGTGAATCATTCCGTAACTGACGGAACTTCCTTTTGGCACTTCTTCAACACCTTCG 540
Query 613 CTGACGTCACTAGCGGTGCTTGTAAGATCAAACACCTTCCAGATTTCTCCCGCCACACCG 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTGACGTCACTAGCGGTGCTTGTAAGATCAAACACCTTCCAGATTTCTCCCGCCACACCG 600
Query 673 TCTTCGATTCTCCGG-TCGTTCTTCCAGTCCCTCCCGGTGGTCCACGTGTCACTTTCGAC 731
||||||||||||||| | ||||| | |||||||||||||||||||||||||||||||||
Sbjct 601 TCTTCGATTCTCCGGCT-GTTCTACGAGTCCCTCCCGGTGGTCCACGTGTCACTTTCGAT 659
Query 732 GCCGACCAACCTCTACGGGAGAGAATTTTTCATTTCAGCAGAGAGGCGATTACCAAACTG 791
||||| || ||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 660 GCCGATCAGCCTCTCCGGGAGAGAATTTTTCATTTCAGCAGAGAGGCGATTACGAAACTG 719
Query 792 AAACAGAGGACGAATAACAGAGTTAACGGAATTGAGACTGCCGTTAACGATGGAAGGAAA 851
|||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||
Sbjct 720 AAACAGAGGACGAATAACAGAGTTAACGGAATTGAGCCTGCTGTTAACGACGGAAGGAAA 779
Query 852 TGTAACGG-A---GAGA--TTAACGGAAAAATAACAACCGTTTTGGATAGTTTTTTGAAT 905
|||||||| | |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TGTAACGGTAACAGAGAGATTAACGGAAAAATAACAACCGTTTTGGATAGTTTTTTGAAT 839
Query 906 AATAAGAAGAGTTATGATCGGACGGCTGAGATTTCATCGTTCCAATCTCTCAGCGCTCAG 965
|||||||||| | |||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 840 AATAAGAAGACTCATGATCGGACGGCTGAGATTTCATCGTTCCAATCACTCAGTGCTCAG 899
Query 966 CTATGGCGATCCGTTACACGAGCGAGGAATCTCGATCCGAGCAAGACGACGACGTTTCGA 1025
|||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 900 CTATGGCGATCCGTCACGCGATCGAGGAATCTCGATCCGAGCAAGACGACGACGTTTCGA 959
Query 1026 ATGGCGGTTAATTGCCGGCACCGGCTTGAGCCGAAGATGGATCCGTACTACTTCGGAAAC 1085
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 960 ATGGCGGTTAATTGCCGGCACCGGCTTGAGCCTAAGATGGATCCGTACTACTTCGGAAAC 1019
Query 1086 GCGATACAGAGCATACCGACGTTGGCGTCTGCGGGAGATCTGCTAAGCAAAGATCTCAGG 1145
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1020 GCGATACAGAGCATACCGACGTTGGCGTCTGCGGGAGATCTGTTAAGCAAAGATCTCCGG 1079
Query 1146 TGGTCCGCCGAACAGTTACACAGGAACGTGGTGGCGCACGACGACGCGACGGTCCGCCGT 1205
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1080 TGGTCCGCCGAACAATTACACAGAAACGTGGTGGCGCACGACGACGCGACGGTCCGACGG 1139
Query 1206 GGAATCGCCGCTTGGGAAAGCGATCCGAGGCTGTTTCCTCTCGGAAATCCAGATGGAGCT 1265
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1140 GGAATCGCCGCTTGGGAAAGCGATCCGAGGCTGTTTCCTCTCGGAAATCCAGACGGAGCT 1199
Query 1266 TCGATCACGATGGGGAGCTCGCCGAGATTCCCAATGTACGACAATGATTTCGGATGGGGA 1325
||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 1200 TCGATCACGATGGGGAGCTCGCCGAGATTTCCAATGTACGAGAATGATTTCGGTTGGGGA 1259
Query 1326 AAACCGTTAGCTGTGAGAAGCGGCGGAGCGAATAAATTCGACGGGAAGATCTCGGCGTTT 1385
|| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1260 AAGCCGTTAGCGGTGAGAAGCGGCGGAGCGAACAAATTCGACGGGAAGATCTCGGCGTTT 1319
Query 1386 CCCGGTAGAGAAGGAAACGGAAGCGTGGATCTGGAAGTAGTTCTGGCGCCGGAGACTATG 1445
|||||||||||||| |||||||| || |||||||||||||| ||||||||||||||||||
Sbjct 1320 CCCGGTAGAGAAGGTAACGGAAGTGTAGATCTGGAAGTAGTACTGGCGCCGGAGACTATG 1379
Query 1446 ACTGGGATTGAGAACGATGCTGAGTTTATGCAATACGTATCAGAAGTCACTTACGATTGT 1505
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1380 ACTGGGATTGAGAACGATCCTGAGTTTATGCAATACGTATCACAAGTCACTTACGATTGT 1439
Query 1506 TGAAAACGACGTAGTTTCTGATACAGA 1532
|||||||||| | ||||||||||||||
Sbjct 1440 TGAAAACGACATCGTTTCTGATACAGA 1466
Score = 219 bits (118), Expect = 8e-56
Identities = 187/217 (86%), Gaps = 17/217 (8%)
Strand=Plus/Plus
Query 1572 ATGGCATGGCACTTTGGACGGTTGAGATTTATCTATAAAGTTTTTAGATATTTCGATCTG 1631
||| ||||||||||| ||||||||||||||||| | ||| ||||||||||||||||
Sbjct 1466 ATGACATGGCACTTTTGACGGTTGAGATTTATC-A-AAA-AAATTAGATATTTCGATCTA 1522
Query 1632 AGAGTTGTGAAGCGAA-CGACGTCTTATGAGTC-A---ATCTACT-G-----G-TCTTAA 1679
|||||||||||||||| || |||||||||||| | ||||||| | | ||||||
Sbjct 1523 AGAGTTGTGAAGCGAAGGGA-GTCTTATGAGTCAATCTATCTACTGGTCTTTGTTCTTAA 1581
Query 1680 TGTGACAGT-GTATTATTAATGTACAAAATCCCGTCTTTTTCAAGTTTTTCTTTCTAAAT 1738
||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1582 TGTGACAGTATTACTATTAATGTACAAAATCCCGTCTTTTTCAATTTTTTCTTTCTAAAT 1641
Query 1739 TAACAACTCTGTATTATCATTTTAGAAACTTTTATTT 1775
||||||| ||||||||||| ||||||||||||| |||
Sbjct 1642 TAACAACCCTGTATTATCAATTTAGAAACTTTTTTTT 1678
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67648275120
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5