BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01220.1
Length=1956
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892092 jgi|Araly1|892092|Al_scaffold_0006_88 2254 0.0
> Ahg892092 jgi|Araly1|892092|Al_scaffold_0006_88
Length=1557
Score = 2254 bits (1220), Expect = 0.0
Identities = 1458/1565 (93%), Gaps = 47/1565 (3%)
Strand=Plus/Plus
Query 107 GACTCTTTCTTCTATAAATCTCTCTATACCTCCTCATTTGCTTCCTAGCACG------A- 159
||| ||||||||||||||||||||| || |||||| |||||||||||||||| |
Sbjct 3 GACCCTTTCTTCTATAAATCTCTCTGTATCTCCTCGTTTGCTTCCTAGCACGACCATCAT 62
Query 160 C-T-AACACTTGTTCTTCTT-C-CT-CTGCAACCTCTTGTTCTCCTCCCAGGTCTTCTTC 214
| | |||||||||||||||| | || ||||| || |||| | | |||||||| | |||
Sbjct 63 CATCAACACTTGTTCTTCTTCCTCTGCTGCAGCCACTTG-T-T-CTCCCAGG---TGTTC 116
Query 215 TTTTGTTCTTCATTCCCC----TCTTTC-G--TTT-G-GTCACCGGAGATTACCC---A- 261
||||| |||||||||| || ||| | ||| | |||| |||||||||||| |
Sbjct 117 TTTTG---TTCATTCCCCTGTTTCATTCGGTCTTTCGTGTCAACGGAGATTACCCATTAG 173
Query 262 -TT-A---GCAAGAAAAGCAAGCTCCGCTTCTGTGGAGTGATTACAA---AGGAAG---C 310
|| | |||||||||||||||||||||||||||||| |||||||| ||| | |
Sbjct 174 CTTGATTCGCAAGAAAAGCAAGCTCCGCTTCTGTGGAGAGATTACAAGGGAGGCTGTTTC 233
Query 311 TGTTTCTGGGTCCAACGATATGACTATTACTCAAGTCAGAGAAGATGACGAATCGGAGAT 370
||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||
Sbjct 234 TGTTTCTGGGTCCAACGATATGACTATTACTGAAGTTAGGGAAGATGACGAATCGGAGAT 293
Query 371 TGATGCGCCGCTTCTCGATCCTGAGTCGCTCTCTAAGCCTAGGAGAATTGCTCTCTTTGT 430
||| || |||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 294 TGAAGCTCCGCTTCTCGATCCTGAGTCGCTCTCAAAGCCTAGGAGAATCGCTCTCTTTGT 353
Query 431 TGAGCCTTCTCCCTTTGCCTATGTATCCGGCTACAAAAACAGATTCCAGAATTTCATTAG 490
||||||||| || ||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 354 TGAGCCTTCACCGTTTGCCTATGTCTCCGGATACAAAAACAGATTCCAGAATTTCATTAG 413
Query 491 ATACCTCCGTGAAATGGGAGACGAGGTTATAGTCGTGACGACACATGAAGGTGTTCCTGA 550
|| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 414 GTATCTGCGTGAAATGGGAGACGAGGTTATAGTTGTGACGACACATGAAGGTGTTCCTGA 473
Query 551 AGAGTTTTATGGAGCCAGAGTCATTGGATCAAGAAGCTTCCCTTGTCCTTATTACCAAAA 610
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 474 AGAGTTTTATGGAGCCAAAGTCATTGGATCAAGAAGCTTCCCTTGCCCTTATTACCAAAA 533
Query 611 GGTTCCACTCTCGCTTGCGCTTAGTCCAAGAATCATCTCTGAAATTGCACGGTTTAAGCC 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 GGTTCCACTCTCGCTTGCGCTTAGTCCAAGAATCATCTCTGAAATTGCACGGTTTAAGCC 593
Query 671 TGACATTATACACGCTTCATCTCCC-GGAGTTATGGTCTTTGGTGCTCTGGCAATAGCAA 729
|||||| ||||||||||| |||||| ||| | ||||||||||||||||||||||||||||
Sbjct 594 TGACATAATACACGCTTCGTCTCCCGGGA-TAATGGTCTTTGGTGCTCTGGCAATAGCAA 652
Query 730 AAATGCTATCTGTACCAATAGTAATGTCTTACCACACACACGTCCCTGTATACATCCCAA 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 AAATGCTATCTGTACCAATAGTAATGTCTTACCACACACACGTCCCTGTATACATCCCAA 712
Query 790 GATACACTTTTAGTTGGTTGGTAAAACCAATGTGGTCTATAATAAGGTTCCTTCACAGAG 849
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 713 GATACACTTTTAGTTGGTTGGTAAAACCAATGTGGTCTATAATAAGATTCCTTCACAGAG 772
Query 850 CGGCTGATCTTACATTAGTTCCTTCTGCTGCCATTGGAAAAGATCTTATAGCAGCTGGTG 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 CGGCTGATCTTACATTAGTTCCTTCTGCTGCCATTGGAAAAGATCTTATAGCAGCTGGTG 832
Query 910 CAACTGCAGCTAATCAACTTCGACTTTGGAATAAGGGTGTCGATTCAGAAAGCTTCAATC 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 CAACTGCAGCTAATCAACTTCGACTTTGGAATAAGGGTGTCGATTCAGAAAGCTTCAATC 892
Query 970 CCCGTTTCCGTTCTCAAGAAATGCGTATAAGACTGAGTAATGGCGAACCAGAAAAGCCAC 1029
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 893 CCCGTTTCCGTTCTCAAGAAATGCGTATAAGACTAAGTAATGGTGAACCAGAAAAGCCAC 952
Query 1030 TAGTGATTCATGTAGGTCGCATTGGCGTAGAAAAGAGTTTGGAGCTTTTAAAGAGTGTAA 1089
||||||| ||||||||||| || |||||||| ||||||||||||||| ||||||||||||
Sbjct 953 TAGTGATCCATGTAGGTCGTATCGGCGTAGAGAAGAGTTTGGAGCTTCTAAAGAGTGTAA 1012
Query 1090 TGGACAAATTACCTGAAGCTCGGATTGCTTTCATTGGAGATGGACCATACAAAGAGGATC 1149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 TGGACAAATTACCTGAAGCTCGGATTGCTTTCATTGGAGATGGACCATACAAAGAGGATC 1072
Query 1150 TTGAGAAGTTGTTTACCGGAATGCCAGCGGTTTTCACTGGAACGTTACAAGGCGATGAAC 1209
||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||
Sbjct 1073 TTGAGAAGTTGTTTACCGGAATGCCAGCGGTTTTCACGGGAATGTTGCAAGGCGATGAAC 1132
Query 1210 TCTCACAAGCTTACGCAAGTGGAGATGTGTTTGTGATGCCATCAGAGTCGGAGACACTTG 1269
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1133 TCTCACAAGCTTACGCAAGTGGAGATGTGTTTGTGATGCCATCAGAGTCAGAGACACTTG 1192
Query 1270 GCCTTGTGGTTCTTGAAGCAATGTCTTCAGGACTTCCTGTCGTCGCGGCCCGTGCCGGTG 1329
||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||
Sbjct 1193 GCCTTGTGGTTCTTGAAGCAATGGCTTCAGGACTTCCTGTAGTTGCGGCCCGTGCCGGTG 1252
Query 1330 GAATCCCTGATATAATCCCTGAAGATCAGGAGGGAAAAACCGGATTTTTGTTCAACCCTG 1389
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1253 GAATCCCTGATATAATCCCTGAAGACCAGGAGGGAAAAACTGGATTTTTGTTCAACCCTG 1312
Query 1390 GAGATGTTGAAGATTGCGTGACAAAACTGAGAACTTTACTGCACGACCGTGAAACAAGAG 1449
||||||| ||||| |||||||| || |||||| ||||||||||||||||||||| |||||
Sbjct 1313 GAGATGTCGAAGACTGCGTGACGAAGCTGAGAGCTTTACTGCACGACCGTGAAAAAAGAG 1372
Query 1450 AGATCATTGGAAAAGCGGCAAGAGAAGAGACCGAGAAATATGATTGGAGAGCAGCAACGA 1509
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1373 AGATCATTGGAAAAGCGGCAAGAGAAGAAACCGAGAAGTATGATTGGAGAGCAGCAACGA 1432
Query 1510 CAAAGATACGCAATGAACAGTACAGTGCAGCGATTTGGTTCTGGAGGAAAAAGAAAGTTC 1569
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 CAAAGATACGCAATGAACAATACAGTGCAGCGATTTGGTTCTGGAGGAAAAAGAAAGTTC 1492
Query 1570 ATGTTTTGGGACCAATCAATTGGTTGATTAAACGACTGTTTCCAGTACCGGAAGGTAACG 1629
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 1493 ATGTTTTGGGACCAATCAATTGGTTGATTAAACGACTGTTTCCAGTGCCGGAAGTTAACG 1552
Query 1630 TGTAG 1634
|||||
Sbjct 1553 TGTAG 1557
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73514172850
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5