BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G01225.1

Length=405
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg486956 jgi|Araly1|486956|fgenesh2_kg.6__90__AT5G01225.1           536    4e-152


> Ahg486956 jgi|Araly1|486956|fgenesh2_kg.6__90__AT5G01225.1
Length=406

 Score =  536 bits (290),  Expect = 4e-152
 Identities = 373/411 (91%), Gaps = 13/411 (3%)
 Strand=Plus/Plus

Query  1    ATGTCTCGAAGAGCATCCAAAAGAGTACGCTTTAGTCCGGACCCAGAAGCAAACGACGAA  60
            |||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct  1    ATGTCTCGAAGAACATCCAAAAGAGTAAGTTTTAGTCCGGACCCAGAAGCAAACGACGAA  60

Query  61   CTGATCTTCCCAACACACAGCTCATCACGGCATGGTCGCAGGAGGGTCGTTGTTGGAATA  120
            ||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||| 
Sbjct  61   CTGGTCTTCCCAACACACACCTCATCACGGCATGGTCGGAGGAGGGTCGTTGTTGGAATT  120

Query  121  TTCAGTTTCAGCT-TCAGTGACTCGCCGGCAACGACGAAGAGATTACTCCG-CAGTATTG  178
            ||||||||| | | ||||||||||| ||||| | |  |||||||||||||| | ||||||
Sbjct  121  TTCAGTTTCGG-TGTCAGTGACTCGACGGCAGC-A--AAGAGATTACTCCGGC-GTATTG  175

Query  179  GAGACAGAGTTGGCAAAACGTTTCGTTATATATCATTCGGCAGGATGA--A----CACCA  232
            ||| ||||||| |||||||||| |||||||||||||||||||||| ||  |    |||||
Sbjct  176  GAGCCAGAGTTAGCAAAACGTTCCGTTATATATCATTCGGCAGGAAGAGTAATAACACCA  235

Query  233  AAACGACACCGTCATCTTCCAGTAACGTTTCTTCGTCTCTTTATTTGATGAAGTCAAAGT  292
            ||||||| ||||||||||| || ||| |||| |||||| |||||||||||||||||||||
Sbjct  236  AAACGACGCCGTCATCTTCGAGAAACCTTTCCTCGTCTATTTATTTGATGAAGTCAAAGT  295

Query  293  CTCTAAACGGATCAGAGTCTCACCGTGCAGAAGCCATTGAGGACTGCATTGAGTTCTTAA  352
            ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  296  CTCTAAACGAATCAGAGTCTCACCGTGCAGAAGCCATTGAGGACTGCATCGAGTTCTTAA  355

Query  353  ACTCTTGCTCTTCTTTGTCGAGATCAAACTCGATCTCTACCTGGTCTCGCT  403
            ||||||| ||||||||||||||||||||||||||||| ||||||||| |||
Sbjct  356  ACTCTTGTTCTTCTTTGTCGAGATCAAACTCGATCTCCACCTGGTCTTGCT  406



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14537279409


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5