BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G01225.1 Length=405 Score E Sequences producing significant alignments: (Bits) Value Ahg486956 jgi|Araly1|486956|fgenesh2_kg.6__90__AT5G01225.1 536 4e-152 > Ahg486956 jgi|Araly1|486956|fgenesh2_kg.6__90__AT5G01225.1 Length=406 Score = 536 bits (290), Expect = 4e-152 Identities = 373/411 (91%), Gaps = 13/411 (3%) Strand=Plus/Plus Query 1 ATGTCTCGAAGAGCATCCAAAAGAGTACGCTTTAGTCCGGACCCAGAAGCAAACGACGAA 60 |||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 1 ATGTCTCGAAGAACATCCAAAAGAGTAAGTTTTAGTCCGGACCCAGAAGCAAACGACGAA 60 Query 61 CTGATCTTCCCAACACACAGCTCATCACGGCATGGTCGCAGGAGGGTCGTTGTTGGAATA 120 ||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||| Sbjct 61 CTGGTCTTCCCAACACACACCTCATCACGGCATGGTCGGAGGAGGGTCGTTGTTGGAATT 120 Query 121 TTCAGTTTCAGCT-TCAGTGACTCGCCGGCAACGACGAAGAGATTACTCCG-CAGTATTG 178 ||||||||| | | ||||||||||| ||||| | | |||||||||||||| | |||||| Sbjct 121 TTCAGTTTCGG-TGTCAGTGACTCGACGGCAGC-A--AAGAGATTACTCCGGC-GTATTG 175 Query 179 GAGACAGAGTTGGCAAAACGTTTCGTTATATATCATTCGGCAGGATGA--A----CACCA 232 ||| ||||||| |||||||||| |||||||||||||||||||||| || | ||||| Sbjct 176 GAGCCAGAGTTAGCAAAACGTTCCGTTATATATCATTCGGCAGGAAGAGTAATAACACCA 235 Query 233 AAACGACACCGTCATCTTCCAGTAACGTTTCTTCGTCTCTTTATTTGATGAAGTCAAAGT 292 ||||||| ||||||||||| || ||| |||| |||||| ||||||||||||||||||||| Sbjct 236 AAACGACGCCGTCATCTTCGAGAAACCTTTCCTCGTCTATTTATTTGATGAAGTCAAAGT 295 Query 293 CTCTAAACGGATCAGAGTCTCACCGTGCAGAAGCCATTGAGGACTGCATTGAGTTCTTAA 352 ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 296 CTCTAAACGAATCAGAGTCTCACCGTGCAGAAGCCATTGAGGACTGCATCGAGTTCTTAA 355 Query 353 ACTCTTGCTCTTCTTTGTCGAGATCAAACTCGATCTCTACCTGGTCTCGCT 403 ||||||| ||||||||||||||||||||||||||||| ||||||||| ||| Sbjct 356 ACTCTTGTTCTTCTTTGTCGAGATCAAACTCGATCTCCACCTGGTCTTGCT 406 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 14537279409 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5