BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01230.1
Length=1245
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486954 jgi|Araly1|486954|fgenesh2_kg.6__88__AT5G01230.1 1707 0.0
> Ahg486954 jgi|Araly1|486954|fgenesh2_kg.6__88__AT5G01230.1
Length=1063
Score = 1707 bits (924), Expect = 0.0
Identities = 998/1033 (97%), Gaps = 7/1033 (1%)
Strand=Plus/Plus
Query 100 CTAGCTGCTGTATACTATAC-GTGAACCAACTCCGT-ATTCTACTTTAGAGGCCATGGGA 157
|||||||||||||||||| | ||||||||||| | | ||||||||||||||| |||||||
Sbjct 36 CTAGCTGCTGTATACTAT-CAGTGAACCAACT-CTTAATTCTACTTTAGAGGACATGGGA 93
Query 158 AAAGCTTCTCGAGACAAAAGGGATATCTATTATCGTAAAGCTAAAGAAGAAGGATGGCGT 217
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 94 AAAGCTTCTCGAGACAAAAGGGATATCTACTATCGTAAAGCTAAAGAAGAAGGATGGCGT 153
Query 218 GCAAGAAGTGCTTTTAAGCTTCTTCAGATTGATGAAGAATTTAATATTTTTGAAGGTGTG 277
|| |||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 154 GCGAGAAGTGCCTTTAAGCTTCTTCAGATTGATGAAGAATTCAATATTTTTGAAGGCGTG 213
Query 278 AAGAGGGTCGTAGATTTATGTGCTGCACCTGGTAGCTGGAGTCAGGTCTTGAGTCGTCAA 337
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 214 AAGAGGGTTGTAGATTTATGTGCTGCACCTGGTAGCTGGAGTCAGGTCTTGAGTCGTCAA 273
Query 338 TTATATCTTCCTGCAAAGTCCTCAGCTGAGTCAAAAGATGGGGATCTTCCTCTTATAGTA 397
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 274 TTATATCTTCCTGCAAAGTCCTCAGCTGAGTCAAAAGAAGGAGATCTTCCTCTTATAGTA 333
Query 398 GCCATCGATTTGCAGCCTATGGCTCCAATTGAAGGTGTCATCCAGGTTCAAGGGGACATA 457
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 334 GCCATAGATTTGCAGCCTATGGCTCCAATTGAAGGTGTCATCCAGGTCCAAGGGGACATA 393
Query 458 ACTAATGCTCGGACTGCTGAAGTGGTCATTAGACACTTTGACGGCTGCAAAGCGGACCTG 517
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 394 ACTAATGCTAGGACTGCTGAAGTGGTCATTAGACACTTCGACGGCTGCAAAGCGGACCTG 453
Query 518 GTTGTCTGTGATGGTGCTCCAGATGTTACTGGTTTGCATGACATGGATGAATTTGTCCAG 577
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 GTTGTCTGTGATGGTGCACCAGATGTTACTGGTTTGCATGACATGGATGAATTTGTCCAG 513
Query 578 TCCCAACTCATACTAGCAGGATTAACGATTGTAACTCATATTCTTAAAGAAGGTGGAAAA 637
||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||
Sbjct 514 TCCCAACTCATACTAGCGGGTTTAACGATTGTAACCCATATTCTTAAAGAAGGTGGAAAA 573
Query 638 TTTATTGCAAAGATATTCCGTGGAAAAGATACAAGTCTCTTGTACTGTCAACTGAAATTG 697
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 574 TTTATTGCAAAGATATTCCGCGGAAAAGATACAAGTCTCTTGTACTGTCAACTGAAGCTG 633
Query 698 TTTTTCCCAACCGTAACTTTTGCGAAACCGAAAAGCAGCCGCAATTCAAGTATAGAGGCT 757
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 634 TTTTTCCCAACCGTAACTTTTGCGAAACCGAAAAGCAGCCGCAATTCGAGTATAGAGGCT 693
Query 758 TTTGCAGTCTGCGAGAATTACTCTCCGCCAGAAGGATTTAACCCGAGAGATCTGCATCGT 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 TTTGCAGTCTGCGAGAATTACTCTCCGCCAGAAGGATTTAACCCGAGAGATCTGCATCGT 753
Query 818 CTCTTGGAGAAAGTCGGAAGCCCTTCAGGTGGAAGCGATCTCGATTGCAGTAGTGGTTGG 877
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 754 CTCTTGGAGAAAGTTGGAAGCCCTTCAGGTGGAAGCGATCTCGATTGCAGTAGTGGTTGG 813
Query 878 CTTGAAGGACCCAACAAAGTTTATATACCATTCTTGGCATGTGGTGACTTAACCGGTTAT 937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 CTTGAAGGACCCAACAAAGTTTATATACCATTCTTGGCATGTGGTGACTTAACCGGTTAT 873
Query 938 GACTCAGACCGGTCTTACCCACTCCCTAGAGAAGCAGATGGATCATCATACCAGAGTTTG 997
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 874 GACTCAGACCGGTCTTACCCACTCCCTAAAGAAGCAGATGGATCATCATACCAGAGTTTG 933
Query 998 GACCCGATTCAACCTCCGATCGCACCGCCTTATAAACGAGCTCTTGAGCTCAAGAAAGCT 1057
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 934 GACCCGATTCAACCTCCGATCGCACCGCCTTATAAACGAGCACTTGAACTCAAGAAAGCT 993
Query 1058 TCAGCACAAAGCTTCAACTCTTGAAGAAGGTGATACCaaaaaagaaaaaGGAACAAACTT 1117
|||||||||||||||||||||||||| | ||||||||| |||||||||| |||||||||
Sbjct 994 TCAGCACAAAGCTTCAACTCTTGAAG--G-TGATACCAAGAAAGAAAAAGAAACAAACTT 1050
Query 1118 TTCATTGGATTCT 1130
|||||||||||||
Sbjct 1051 TTCATTGGATTCT 1063
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46509958740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5