BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01240.1
Length=2017
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486953 jgi|Araly1|486953|fgenesh2_kg.6__87__AT5G01240.1 2614 0.0
Ahg476933 jgi|Araly1|476933|fgenesh2_kg.2__2063__AT1G77690.1 431 1e-119
> Ahg486953 jgi|Araly1|486953|fgenesh2_kg.6__87__AT5G01240.1
Length=1767
Score = 2614 bits (1415), Expect = 0.0
Identities = 1584/1662 (95%), Gaps = 25/1662 (2%)
Strand=Plus/Plus
Query 105 TTTTGATACTGTGCTCTGCTTCGGAGAGTGTAGAAAGAGA-C-AGAGCTAAAGTCTCTGT 162
|||||||||||||||||||||||||||||| |||| |||| | | || | | |||||||
Sbjct 1 TTTTGATACTGTGCTCTGCTTCGGAGAGTGGAGAACGAGACCTAAAG-T--ACTCTCTGT 57
Query 163 GTTTCTTC-TCAGCAGGACTAAAAGGAAAAAAGGA-AATCGATTGCTAATGTCGGGTGAG 220
|||||||| || || |||||||||||||||| || |||| || ||||||||||||||||
Sbjct 58 GTTTCTTCTTC-TCA-GACTAAAAGGAAAAAA-GAGAATCTATAGCTAATGTCGGGTGAG 114
Query 221 AAACAAGCGGAGGAGTCAATAGTAGTCTCCGGGGAGGATGAGGTGGCCGGTAGAAAAGTG 280
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 115 AAACAAGCGGAGGAGGCAATAGTGGTCTCCGGGGAGGATGAGGTGGCCGGTAGAAAAGTG 174
Query 281 GAAGATTCAGCGGCGGAGGAGGATATTGACGGCAACGGGGGCAATGGATTTAGTATGAAG 340
|||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||
Sbjct 175 GAAGATTCAGCGGCGGAGGAGGGTATTGACGGCAACGGCGGCGATGGATTTAGTATGAAG 234
Query 341 AGCTTCCTCTGGCATGGCGGGTCCGCTTGGGACGCCTGGTTTAGCTGTGCATCAAATCAA 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 AGCTTCCTCTGGCATGGCGGGTCCGCTTGGGACGCCTGGTTTAGCTGTGCATCAAATCAA 294
Query 401 GTGGCACAAGTGCTGTTGACGCTGCCGTATTCGTTCTCGCAGTTGGGAATGTTATCAGGA 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 GTGGCACAAGTGCTGTTGACGCTGCCGTATTCGTTCTCGCAGTTGGGAATGTTATCAGGA 354
Query 461 ATATTGCTTCAAATATTCTATGGGTTAATGGGATCTTGGACTGCTTATCTCATCAGTGTT 520
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 355 ATATTGCTTCAAATATTCTATGGATTAATGGGATCTTGGACTGCTTATCTCATCAGTGTT 414
Query 521 CTTTACGTCGAGTATCGTGCCCGTATGGAGAAACAAGAAGCCAAATCCTTCAAAAACCAC 580
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 415 CTTTACGTCGAATATCGTGCCCGTATGGAGAAACAAGAGGCCAAATCCTTCAAAAACCAC 474
Query 581 GTTATTCAATGGTTTGAAGTGCTTGATGGGCTGCTGGGTCCGTACTGGAAAGCAGCGGGG 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 GTTATTCAATGGTTTGAAGTGCTTGATGGGCTGCTGGGTCCGTACTGGAAAGCAGCGGGG 534
Query 641 CTCGCATTTAATTGCACCTTCTTGTTATTCGGATCAGTCATCCAGCTCATTGCTTGTGCT 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 CTCGCATTTAATTGCACCTTCTTGTTATTCGGATCAGTCATCCAGCTCATTGCTTGTGCT 594
Query 701 AGCAATATATATTACATAAACGATAGGTTAGACAAGAGGACATGGACTTATATATTTGGG 760
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 AGCAATATATATTACATAAACGATAGGTTAGACAAGAGGACATGGACTTATATATTTGGT 654
Query 761 GCTTGCTGTGCCACGACCGTTTTCATACCATCTTTCCACAATTACCGTATTTGGTCTTTC 820
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 GCTTGTTGTGCCACGACCGTTTTCATACCATCTTTCCACAATTACCGTATTTGGTCTTTC 714
Query 821 CTCGGCCTTGGCATGACCACCTACACCGCTTGGTACCTCACCATCGCCTCTTTTCTCCAT 880
||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||
Sbjct 715 CTCGGCCTTGGCATGACCACCTATACCGCTTGGTACCTCACCATCGCCGCATTTCTCCAT 774
Query 881 GGTCAGGCGGAGGGTGTGACACATTCCGGTCCAACCAAGCTTGTGTTGTACTTTACCGGA 940
|||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct 775 GGTCAGGCGGAGGGTGTGACACATTCCGGTCCGACTAAGCTTGTGTTGTACTTCACCGGA 834
Query 941 GCCACCAACATCCTCTATACCTTCGGTGGACACGCTGTGACCGTGGAAATAATGCATGCG 1000
|||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||
Sbjct 835 GCCACCAACATCCTCTATACCTTCGGCGGACACGCCGTGACTGTGGAAATAATGCATGCG 894
Query 1001 ATGTGGAAACCAAGGAAGTTTAAGAGCATCTACTTGATGGCAACTCTGTACGTCTTCACA 1060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 ATGTGGAAACCAAGGAAGTTTAAGAGCATCTACTTGATGGCAACTCTGTACGTCTTCACA 954
Query 1061 TTAACGCTTCCGTCAGCCTCCGCCGTCTACTGGGCTTTCGGCGACCAACTTCTCAACCAC 1120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 TTAACGCTTCCGTCAGCCTCCGCCGTCTACTGGGCTTTCGGCGACCAACTTCTCAACCAC 1014
Query 1121 TCAAACGCTTTCTCTCTCCTCCCTAAAACGCGTTTCCGTGACACCGCCGTTATCCTCATG 1180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1015 TCAAACGCTTTCTCTCTCCTCCCTAAAACGCGTTTCCGTGACACCGCTGTTATCCTCATG 1074
Query 1181 CTCATCCATCAGTTTATAACGTTCGGGTTTGCGTGTACACCATTGTACTTCGTATGGGAA 1240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 CTCATCCATCAGTTTATAACGTTCGGGTTTGCGTGTACACCATTGTACTTCGTATGGGAA 1134
Query 1241 AAAGCGATCGGAATGCACCACACAAAGAGCTTATGTCTAAGAGCGCTGGTGAGGCTACCG 1300
||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1135 AAAGCGATCGGAATGCACCACACGAAGAGCTTATGTCTAAGAGCGCTGGTGAGGTTACCA 1194
Query 1301 GTGGTGGTTCCGATATGGTTTTTGGCAATCATCTTTCCCTTTTTCGGGCCAATAAACTCG 1360
|||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct 1195 GTGGTGGTTCCGATATGGTTTTTGGCCATCATTTTTCCGTTTTTCGGGCCAATAAACTCG 1254
Query 1361 GCAGTTGGAGCCTTACTTGTTACCTTCACCGTCTATATCATCCCTGCCTTAGCCCACATG 1420
||||||||||||||||| |||| |||||||||||| || |||||||||||||||||||||
Sbjct 1255 GCAGTTGGAGCCTTACTAGTTAGCTTCACCGTCTACATTATCCCTGCCTTAGCCCACATG 1314
Query 1421 CTCACGTACCGCACCGCCTCTGCCCGCCGGAACGCGGCGGAGAAACCACCGTTTTTTATC 1480
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1315 CTCACCTACCGCACCGCCTCTGCCCGCCGGAACGCGGCGGAGAAACCACCGTTCTTTATC 1374
Query 1481 CCTAGCTGGGCTGGAGTTTACGTGATAAACGCTTTCATAGTGGTTTGGGTCCTAGTTCTC 1540
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1375 CCTAGCTGGGCCGGAGTTTACGTAATAAACGCTTTCATAGTGGTTTGGGTCCTAGTTCTC 1434
Query 1541 GGGTTCGGGTTTGGCGGATGGGCCAGTATGACCAACTTCATCAGGCAAATTGATACTTTT 1600
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1435 GGGTTCGGGTTTGGCGGATGGGCCAGCATGACCAACTTCATCAGGCAAATTGATACTTTT 1494
Query 1601 GGCCTCTTTGCCAAATGCTACCAATGCAAACCACCTCCAGCTCCGATCGCCGCCGGAGCT 1660
|| ||||||||||||||||| ||||||||||| || |||||||| |||||||||||| ||
Sbjct 1495 GGTCTCTTTGCCAAATGCTATCAATGCAAACCGCCACCAGCTCCAATCGCCGCCGGACCT 1554
Query 1661 CACCACCGCCGTTAGTTAACGTAAGCGACGTGTGATAGTGTGATTGAACCCTTTTTTCTT 1720
|||||| ||||||| | | | || ||||| ||||||||||||||||||||||
Sbjct 1555 CACCACGGCCGTTA---A--G-A--CG---TGTGAAAGTGTGATTGAACCCTTTTTTCCC 1603
Query 1721 -TAATTCTGTATGAAAGAAAATATCTGTAATTCAGTGATTTA 1761
| || |||||||||||||||||||||||||||| ||||||
Sbjct 1604 CT--TT-TGTATGAAAGAAAATATCTGTAATTCAGCGATTTA 1642
> Ahg476933 jgi|Araly1|476933|fgenesh2_kg.2__2063__AT1G77690.1
Length=1669
Score = 431 bits (233), Expect = 1e-119
Identities = 537/682 (79%), Gaps = 27/682 (4%)
Strand=Plus/Plus
Query 343 CTTCCTCTGGCATGGCGGGTCCGCT-TGGGACGCCTGGTTTAGCTGTGCATCAAATCAAG 401
|||| |||||||||| || || | | | || || |||||||| ||||| |||||||| |
Sbjct 130 CTTCTTCTGGCATGGAGGTTCTG-TCTACGATGCTTGGTTTAGTTGTGCTTCAAATCAGG 188
Query 402 TGGCACAAGTGCTGTTGACGCTGCCGTATTCGTTCTCGC-AGTTGGGAATGTTATCAGGA 460
|||||||||| |||||||| | ||||| |||||||| | | ||||| ||| | || |||
Sbjct 189 TGGCACAAGTTCTGTTGACATTACCGTACTCGTTCTCACAACTTGGG-ATGGTGTCGGGA 247
Query 461 ATATTGCTTCAAATATTCTATGGGTTAATGGGATCTTGGACTGCTTATCTCATCAGTGTT 520
|| ||| ||||| | || ||||| |||||||| |||||||||||||||||| ||||||
Sbjct 248 ATTTTGTTTCAACTCTTTTATGGACTAATGGGAAGTTGGACTGCTTATCTCATTAGTGTT 307
Query 521 CTTTACGTCGAGTATCGTGCCCGTATGGAGAAACAAGAAGCCAAA-TC--CTTCAAAAAC 577
|||||||| || ||||| | |||| || ||| |||| ||| || ||| ||
Sbjct 308 CTTTACGTTGAATATCGAACTCGTA--AAG-AACGAGAA---AAATTCGATTTCCGTAAT 361
Query 578 CACGTTATTCAATGGTTTGAAGTGCTT-GATGGGCTGCTGGGTCCGTACTGGAAAGCAGC 636
||||||||||| |||||||| ||| || ||||| || |||| | ||| | | | |
Sbjct 362 CACGTTATTCAGTGGTTTGAGGTG-TTAGATGGATTGTTGGGGAAACATTGG-AGGAACC 419
Query 637 GGGGCTCGCA--TTTAATTGCAC-CTTCTTGTTATTCGGATCAGTCATCCAGCTCATTGC 693
|| | | | ||||| ||||| ||||| | || ||||| || || |||||||||||
Sbjct 420 TTGGATTG-ATCTTTAACTGCACTTTTCTT-CTCTTTGGATCCGTTATTCAGCTCATTGC 477
Query 694 TTGTGCTAGCAATATATATTACATAAACGATAGGTTAGACAAGAGGACATGGACTTATAT 753
||||||||||||||||||||| || || || | || ||||||||||||||||| || ||
Sbjct 478 TTGTGCTAGCAATATATATTATATTAATGACAAATTGGACAAGAGGACATGGACATACAT 537
Query 754 ATTTGGGGCTTGCTGTGCCACGACCGTTTTCATACCATCTTTCCACAATTACCGTATTTG 813
||||||||| || ||||| || || ||||| || || || ||||||||||| | |||||
Sbjct 538 ATTTGGGGCGTGTTGTGCAACAACTGTTTTTATTCCTTCCTTCCACAATTATAGAATTTG 597
Query 814 GTCTTTCCTCGGCCTTGGC-ATGACCACCTACACCGCTTGGTACCTCACCATCGCCTCTT 872
||| |||||||| || | | |||||||| ||||| ||||||| |||||||| || ||
Sbjct 598 GTCATTCCTCGGACTCG-CTATGACCACTTACACTTCTTGGTATCTCACCATTGCTTCAC 656
Query 873 TTCTCCATGGTCAGGCGGAGGGTGTGACACATTCCGGTCCAACCA-AGCTTGTG-TTGTA 930
| || ||||| ||||| |||| ||||| ||| || |||||||||| | | ||| || ||
Sbjct 657 TCCTTCATGGCCAGGCTGAGGATGTGAAACACTCGGGTCCAACCACAA-TGGTGCTT-TA 714
Query 931 CTTTACCGGAGCCACCAACATCCTCTATACCTTCGGTGGACACGCTGTGACCGTGGAAAT 990
||| ||||||||||||||||| ||||||||||||||||||||||| || || ||||| ||
Sbjct 715 CTTCACCGGAGCCACCAACATTCTCTATACCTTCGGTGGACACGCCGTCACAGTGGAGAT 774
Query 991 AATGCATGCGATGTGGAAACCA 1012
|||||| |||||||||||||||
Sbjct 775 AATGCACGCGATGTGGAAACCA 796
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75837677795
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5