BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01250.1
Length=1478
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486951 jgi|Araly1|486951|fgenesh2_kg.6__85__AT5G01250.1 2150 0.0
> Ahg486951 jgi|Araly1|486951|fgenesh2_kg.6__85__AT5G01250.1
Length=1445
Score = 2150 bits (1164), Expect = 0.0
Identities = 1357/1450 (94%), Gaps = 13/1450 (1%)
Strand=Plus/Plus
Query 8 TTAACTTTTCAAAACTAGACAGCCCCCAAAGACAAGAACGTGGTCAAAACAAGTTAAACA 67
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 1 TTAACTTTTCAAAACTAGACAGCCCCCAAAGGCAAGAACATGGTCAAAACAAGTTAAACA 60
Query 68 AGAAATAAAACAGACACAG--AGAAACTCAAAAGTGGTTTCTTTCTTATCAATCTAAA-- 123
|||||||||||||||| || |||||||||||||||| |||||||| ||| |||||||
Sbjct 61 AGAAATAAAACAGACAGAGAAAGAAACTCAAAAGTGGCTTCTTTCTCATCTATCTAAAGC 120
Query 124 ---TCTCCTTTTCTTTTCTGGTTTCCAACTTCAGAACATTTCAGTTCTGTGTTTATTATG 180
||||||| |||||||||||||| ||||||| ||||||||||||||| ||||| |||
Sbjct 121 TTTTCTCCTTCTCTTTTCTGGTTTCAAACTTCACAACATTTCAGTTCTGCCTTTATCATG 180
Query 181 GATCGTCATGATATAGAAAAGAGATTCACGGTGGTGATTGATAACAGACGACTAAACCAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GATCGTCATGATATAGAAAAGAGATTCACGGTGGTGATTGATAACAGACGACTAAACCAA 240
Query 241 TCAGGATCATCATCACTTTTCACCGCCTTCGCTATCAGCTTTGTAACTCTGATCGTGGTT 300
|| |||||||||||||||||||||| |||||| ||||||| | |||||||||||||||||
Sbjct 241 TCTGGATCATCATCACTTTTCACCGGCTTCGCGATCAGCTCTATAACTCTGATCGTGGTT 300
Query 301 ACCACGTTTACTCTAATTTCTAATTTCTCGATGCAACCGCATAGAGATTTCTCAGGAGTG 360
||||||||| ||||||| |||| |||||||||||||||||| |||||||||||||| |||
Sbjct 301 ACCACGTTTGCTCTAATGTCTAGTTTCTCGATGCAACCGCAAAGAGATTTCTCAGGGGTG 360
Query 361 AAGATAGAGATCAAGAGAGTGATTCCACACTTACCTCTGAGTTCTGAGAGAGAAGGTGAA 420
|||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 361 AAGATAGATATCAAGAGAGTGATTCCACACTTACCTCTGAGCTCTGAGAAAGAAGGTGAA 420
Query 421 AGAAGTGATCTGCTCAAACAACAGACACAAGTAAACGAGAAGCTCCAAGTTATCGAAGTT 480
||||||||||||||||| || |||| |||||||||||||||||||||||||||||| |||
Sbjct 421 AGAAGTGATCTGCTCAAGCAGCAGATACAAGTAAACGAGAAGCTCCAAGTTATCGAGGTT 480
Query 481 TTCAGTGGAGATAACTTGTCTGACAAGTTTCAAAAGAGGGTAAATGAGTTTGTCGGTGAT 540
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTTAGTGGAGATAACTTGTCTGACAAGTTTCAAAAGAGGGTAAATGAGTTTGTCGGTGAT 540
Query 541 GGATGCGAAGTCAACTTCGTCATGACATGGATATCACCAGCAGATTTCTTTGGCAATAGA 600
||||| ||||||||||| ||||||||||||||||||||||||| ||||| |||||||||
Sbjct 541 GGATGTGAAGTCAACTTTATCATGACATGGATATCACCAGCAGAGTTCTTCGGCAATAGA 600
Query 601 GAGGTTTTAGCTATTGAAAGTGTCTTTAAGTCTCATCCGTATGGTTGCTTGATGATCTTA 660
||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 601 GAGCTTTTAGCTATTGAAAGTGTCTTTAAATCTCATCCTTATGGTTGCTTGATGATCTTA 660
Query 661 TCCGCAACCATGGATTCTCCTCAAGGTTATGCAACTTTGAAGCCGTTTATTGATCGTGGT 720
|||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||
Sbjct 661 TCCGCAACCATGGATTCTCCTCAAGGTTATACAGTTTTGAAGCCGTTTCTTGATCGTGGT 720
Query 721 TACAAAGTTCTTGCAGTCACACCAGATTTGCCTTTTCTGCTCAAAGGAACCGCGGGAGAG 780
||||||||||||||||||||||||||||| |||||||| |||||||||||||| || ||
Sbjct 721 TACAAAGTTCTTGCAGTCACACCAGATTTACCTTTTCTACTCAAAGGAACCGCTGGTGAA 780
Query 781 TTGTGGCTCGACGAAATAAAGAGCGGTAAAAGAGATCCCGGAAAGATTTCTTTAGCTCAG 840
| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 781 TCGTGGCTCGAGGAAATAAAGACCGGTAAAAGAGATCCCGGAAAGATTTCTTTAGCTCAG 840
Query 841 AATCTCTCAAATCTCATGAGGCTTGCTTACTTGTACAAATATGGAGGTGTGTACTTAGAC 900
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 841 AATCTCTCAAATCTCATGAGGCTTGCTTACTTATACAAATATGGAGGTGTTTACTTAGAC 900
Query 901 ACAGACATGATTGTTCTAAAAAGCTTCAAAGGTCTGAGAAACGTGATTGGTGCACAAACA 960
|||||||||||| ||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct 901 ACAGACATGATTATTCTAAAAAGCTTCAAAGGGCTTAGAAACGTGATTGGAGCACAAACA 960
Query 961 CTTGATCCTTCATCAACGAATTGGACAAGACTAAACAACGCGGTACTAATATTCGACAAG 1020
||||||||||||||||| |||||||||||| | ||||||||||| |||||||||||||||
Sbjct 961 CTTGATCCTTCATCAACAAATTGGACAAGATTGAACAACGCGGTGCTAATATTCGACAAG 1020
Query 1021 AACCATCCTCTGTTACTCAAATTCATGGAAGAGTTCGCTAAAACTTTCAACGGAAACATA 1080
|||||||||||| ||||||||||||| ||||| ||||| ||||||||||| |||||||||
Sbjct 1021 AACCATCCTCTGCTACTCAAATTCATCGAAGAATTCGCGAAAACTTTCAATGGAAACATA 1080
Query 1081 TGGGGATACAACGGACCATACCTTGTTTCACGAGTGGCTAGAGCTGTAGAAGGATCAAGT 1140
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1081 TGGGGATACAACGGACCATACCTTGTTTCCCGAGTGGCTAGAGCTGTGGAAGGATCAAGT 1140
Query 1141 GGCTATAACTTCACCGTCATGCGACCATCTGTGTTCTATTCGGTAAACTGGCTCGAGATT 1200
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 GGTTATAACTTCACCGTCATGCGACCATCTGTGTTCTATTCGGTAAACTGGCTCGAGATT 1200
Query 1201 AAGAAGTTGTTCAAAGTGCCTAAAACAGAGAAAGATTCGAAATGGGTCAAAACCAAGCTT 1260
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1201 AAGAAGTTGTTCAAAGTGGCTAAAACAGAGAAAGATTCGAAATGGGTCAAAATCAAGCTT 1260
Query 1261 CTTCATATGCAGAGGAATGGTTATGGTTTGCATCTGTGGAATAAGTTTAGCAGGAAATAC 1320
|||||||||| || || ||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1261 CTTCATATGCGGAAGAGTGGCTATGGTTTGCATCTATGGAATAAGTTTAGCAGGAAATAT 1320
Query 1321 GAAATTGAACAAGGAAGTGCCATGTGGAAACTGGTTTCAGAGCATTGCATAATCTGTGAA 1380
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1321 GAAATTGAACAAGGAAGTGCCATGTGGAAACTGGTTTCAGACCATTGCATTATCTGTGAA 1380
Query 1381 ATTAGTTCTG-TATCATCATAGTCTATTGTTTGAATTTGTTCCATTAATCACACACACTG 1439
||| |||||| | || | ||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1381 ATTGGTTCTGCT-TC-T--TAGTCTATTGTTTGAATTTGTTCCATTAATC-CACATACTG 1435
Query 1440 TAGATAACTT 1449
||||||||||
Sbjct 1436 TAGATAACTT 1445
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55307035740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5