BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G01280.1

Length=1557
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg939543 jgi|Araly1|939543|scaffold_600087.1                        265    9e-70


> Ahg939543 jgi|Araly1|939543|scaffold_600087.1
Length=211

 Score =  265 bits (143),  Expect = 9e-70
 Identities = 185/205 (90%), Gaps = 4/205 (2%)
 Strand=Plus/Plus

Query  1194  GGATGTTAGAAAAGGAAGCATGGCGGGGAATTTCCGA-CATTCAGTGACGAAAGCACCGG  1252
             ||||||||||  ||||||||||||||||||||||||| || |||||||||||||  ||||
Sbjct  2     GGATGTTAGACGAGGAAGCATGGCGGGGAATTTCCGACCA-TCAGTGACGAAAGTTCCGG  60

Query  1253  CGACTTCGGTGTACAGTGTGAGATCATGTCGAAACCGGCCGGTGAGCAGCAGCCGAAGCT  1312
             | |||||  || ||||||| ||||||||||||||||||||||||| ||||||| ||||||
Sbjct  61    CCACTTCATTGAACAGTGTAAGATCATGTCGAAACCGGCCGGTGATCAGCAGCGGAAGCT  120

Query  1313  CGGAATCAAGTGTCAACATTTTGTGCTTAGACGGTAGCGACGATAATCTCAGCGACATGA  1372
             ||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||| |
Sbjct  121   CGGAATCAAGTGTCAACATTTTGCGCTTAGACGGTAGCGATGATAATCTGAGCGACATAA  180

Query  1373  GTTGCTCTTAA-GAGTTACAACTTA  1396
             ||| ||||||| ||||||||| |||
Sbjct  181   GTTACTCTTAAAGAGTTACAA-TTA  204



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 58316165095


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5