BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G01280.1 Length=1557 Score E Sequences producing significant alignments: (Bits) Value Ahg939543 jgi|Araly1|939543|scaffold_600087.1 265 9e-70 > Ahg939543 jgi|Araly1|939543|scaffold_600087.1 Length=211 Score = 265 bits (143), Expect = 9e-70 Identities = 185/205 (90%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 1194 GGATGTTAGAAAAGGAAGCATGGCGGGGAATTTCCGA-CATTCAGTGACGAAAGCACCGG 1252 |||||||||| ||||||||||||||||||||||||| || ||||||||||||| |||| Sbjct 2 GGATGTTAGACGAGGAAGCATGGCGGGGAATTTCCGACCA-TCAGTGACGAAAGTTCCGG 60 Query 1253 CGACTTCGGTGTACAGTGTGAGATCATGTCGAAACCGGCCGGTGAGCAGCAGCCGAAGCT 1312 | ||||| || ||||||| ||||||||||||||||||||||||| ||||||| |||||| Sbjct 61 CCACTTCATTGAACAGTGTAAGATCATGTCGAAACCGGCCGGTGATCAGCAGCGGAAGCT 120 Query 1313 CGGAATCAAGTGTCAACATTTTGTGCTTAGACGGTAGCGACGATAATCTCAGCGACATGA 1372 ||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||| | Sbjct 121 CGGAATCAAGTGTCAACATTTTGCGCTTAGACGGTAGCGATGATAATCTGAGCGACATAA 180 Query 1373 GTTGCTCTTAA-GAGTTACAACTTA 1396 ||| ||||||| ||||||||| ||| Sbjct 181 GTTACTCTTAAAGAGTTACAA-TTA 204 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58316165095 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5